Wall clock time and date at job start Tue Mar 31 2020 06:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00392 * 2 1 4 4 H 1.48495 * 109.47198 * 240.00518 * 3 2 1 5 5 H 1.48500 * 109.46829 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46848 * 120.00109 * 3 2 1 7 7 C 1.38819 * 119.99579 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99603 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00320 * 359.97438 * 7 2 1 10 10 C 1.47810 * 134.58000 * 0.04918 * 9 7 2 11 11 C 1.53942 * 86.15823 * 155.42417 * 10 9 7 12 12 C 1.47575 * 134.49551 * 180.02562 * 9 7 2 13 13 H 1.08996 * 113.77057 * 90.21316 * 12 9 7 14 14 C 1.53000 * 113.76753 * 318.92817 * 12 9 7 15 15 N 1.46502 * 109.47257 * 76.34664 * 14 12 9 16 16 C 1.34768 * 120.00602 * 180.02562 * 15 14 12 17 17 O 1.21288 * 119.99460 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00714 * 179.97438 * 16 15 14 19 19 H 1.09000 * 109.35823 * 60.26362 * 18 16 15 20 20 C 1.52664 * 109.25525 * 300.59504 * 18 16 15 21 21 N 1.46125 * 110.93408 * 290.51631 * 20 18 16 22 22 C 1.34662 * 121.01913 * 319.84572 * 21 20 18 23 23 O 1.21557 * 120.31674 * 187.55326 * 22 21 20 24 24 C 1.47819 * 119.37482 * 7.53223 * 22 21 20 25 25 C 1.39234 * 121.08297 * 192.77985 * 24 22 21 26 26 C 1.38065 * 119.66592 * 179.85090 * 25 24 22 27 27 C 1.38381 * 120.14353 * 359.97438 * 26 25 24 28 28 C 1.38405 * 120.40930 * 0.38636 * 27 26 25 29 29 C 1.37835 * 119.99276 * 0.02562 * 28 27 26 30 30 H 0.97005 * 119.99928 * 359.97438 * 1 2 3 31 31 H 1.08997 * 113.83824 * 41.09666 * 10 9 7 32 32 H 1.09008 * 113.76950 * 269.74456 * 10 9 7 33 33 H 1.08998 * 113.74417 * 269.16802 * 11 10 9 34 34 H 1.09007 * 113.74085 * 137.85961 * 11 10 9 35 35 H 1.09002 * 109.47181 * 316.34904 * 14 12 9 36 36 H 1.09000 * 109.47268 * 196.34335 * 14 12 9 37 37 H 0.97004 * 119.99674 * 359.97438 * 15 14 12 38 38 H 1.09005 * 109.18276 * 50.89284 * 20 18 16 39 39 H 1.08999 * 109.18083 * 170.13987 * 20 18 16 40 40 H 0.96999 * 119.49427 * 139.86998 * 21 20 18 41 41 H 1.08001 * 120.17123 * 359.83233 * 25 24 22 42 42 H 1.07998 * 119.92464 * 179.70143 * 26 25 24 43 43 H 1.08007 * 119.79670 * 180.36026 * 27 26 25 44 44 H 1.08005 * 120.00650 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0101 -1.2023 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1051 -2.7602 -0.0010 11 6 0.3466 -4.0862 -0.6393 12 6 1.7199 -3.8102 -0.0005 13 1 1.8338 -4.2345 0.9969 14 6 2.9019 -4.1222 -0.9205 15 7 4.1447 -3.6721 -0.2886 16 6 5.3226 -3.8438 -0.9204 17 8 5.3539 -4.3715 -2.0121 18 6 6.6009 -3.3803 -0.2707 19 1 6.7345 -3.9022 0.6768 20 6 6.5190 -1.8776 -0.0139 21 7 6.5568 -1.1306 -1.2692 22 6 7.3763 -1.4996 -2.2720 23 8 7.4996 -0.7947 -3.2546 24 6 8.1251 -2.7697 -2.1663 25 6 9.1694 -3.0633 -3.0392 26 6 9.8510 -4.2572 -2.9121 27 6 9.4981 -5.1569 -1.9218 28 6 8.4559 -4.8731 -1.0564 29 6 7.7622 -3.6882 -1.1785 30 1 -0.4850 0.8401 0.0004 31 1 -0.7203 -2.1441 -0.6567 32 1 -0.5295 -2.8749 0.9965 33 1 0.3575 -4.0674 -1.7291 34 1 -0.1579 -4.9630 -0.2332 35 1 2.7694 -3.6048 -1.8707 36 1 2.9521 -5.1969 -1.0959 37 1 4.1196 -3.2498 0.5843 38 1 5.5889 -1.6537 0.5085 39 1 7.3606 -1.5744 0.6089 40 1 5.9829 -0.3567 -1.3818 41 1 9.4447 -2.3608 -3.8119 42 1 10.6586 -4.4913 -3.5900 43 1 10.0389 -6.0867 -1.8238 44 1 8.1862 -5.5798 -0.2855 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038343725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:58 Heat of formation + Delta-G solvation = -13.277999 kcal Electronic energy + Delta-G solvation = -28596.961148 eV Core-core repulsion = 24707.699167 eV Total energy + Delta-G solvation = -3889.261981 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.16641 -40.51298 -39.56556 -39.10580 -37.09375 -35.52053 -34.17788 -33.31103 -32.03499 -30.74951 -29.84344 -28.83610 -25.64470 -25.26847 -24.99890 -23.97530 -22.82183 -21.84310 -20.96772 -20.23215 -18.75864 -18.56650 -18.37555 -17.95128 -17.17106 -17.07805 -16.69357 -16.31963 -16.02495 -15.80477 -15.63832 -15.45268 -15.35899 -14.79374 -14.73224 -14.57341 -14.20140 -13.65218 -13.58071 -13.34369 -13.29840 -13.13718 -12.89459 -12.66983 -12.61082 -12.49889 -12.32577 -12.04670 -11.83065 -11.52209 -11.35860 -11.15691 -10.90063 -10.78954 -10.32995 -10.00316 -9.93226 -9.75714 -8.85730 -7.83990 -5.14832 -0.19664 0.34250 1.43589 1.48398 1.51613 1.58707 1.73333 2.10118 2.23312 2.48838 2.86672 3.29477 3.36914 3.41932 3.45511 3.57776 3.81435 3.90432 4.02462 4.14123 4.17428 4.30493 4.33025 4.37531 4.45434 4.55138 4.60995 4.65305 4.73187 4.81357 4.89267 5.00982 5.06987 5.12743 5.30257 5.36008 5.38794 5.45759 5.46991 5.63283 5.66507 5.77022 5.94132 5.99633 6.04519 6.56993 6.96529 6.99149 7.24547 7.69048 8.63787 9.33268 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.014290 B = 0.004130 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.974504 B = 6778.396194 C = 8169.903182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.071 4.071 3 Si 0.958 3.042 4 H -0.287 1.287 5 H -0.306 1.306 6 H -0.264 1.264 7 C -0.206 4.206 8 H 0.092 0.908 9 N -0.629 5.629 10 C 0.150 3.850 11 C -0.135 4.135 12 C 0.137 3.863 13 H 0.079 0.921 14 C 0.134 3.866 15 N -0.705 5.705 16 C 0.514 3.486 17 O -0.579 6.579 18 C -0.084 4.084 19 H 0.176 0.824 20 C 0.111 3.889 21 N -0.724 5.724 22 C 0.556 3.444 23 O -0.589 6.589 24 C -0.151 4.151 25 C -0.080 4.080 26 C -0.127 4.127 27 C -0.085 4.085 28 C -0.114 4.114 29 C -0.036 4.036 30 H 0.242 0.758 31 H 0.034 0.966 32 H 0.025 0.975 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.031 0.969 36 H 0.080 0.920 37 H 0.411 0.589 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.405 0.595 41 H 0.122 0.878 42 H 0.157 0.843 43 H 0.165 0.835 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.934 -13.935 5.283 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.264 4.264 3 Si 0.788 3.212 4 H -0.214 1.214 5 H -0.233 1.233 6 H -0.190 1.190 7 C -0.334 4.334 8 H 0.110 0.890 9 N -0.355 5.355 10 C 0.024 3.976 11 C -0.173 4.173 12 C 0.031 3.969 13 H 0.096 0.904 14 C 0.009 3.991 15 N -0.356 5.356 16 C 0.301 3.699 17 O -0.459 6.459 18 C -0.105 4.105 19 H 0.193 0.807 20 C -0.012 4.012 21 N -0.374 5.374 22 C 0.345 3.655 23 O -0.471 6.471 24 C -0.154 4.154 25 C -0.099 4.099 26 C -0.145 4.145 27 C -0.103 4.103 28 C -0.132 4.132 29 C -0.037 4.037 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.050 0.950 36 H 0.098 0.902 37 H 0.248 0.752 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.241 0.759 41 H 0.140 0.860 42 H 0.174 0.826 43 H 0.182 0.818 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 18.141 -13.778 4.078 23.142 hybrid contribution -0.660 2.221 -0.083 2.318 sum 17.481 -11.557 3.995 21.333 Atomic orbital electron populations 1.69990 1.06377 1.25007 1.59229 1.25472 0.96275 1.00383 1.04268 0.85449 0.77424 0.80049 0.78295 1.21376 1.23283 1.18953 1.19269 0.90812 0.82727 1.40612 0.89011 1.46419 1.03091 1.00027 1.85969 1.22184 0.87297 0.91638 0.96457 1.23575 0.95664 0.97923 1.00176 1.22659 0.92832 0.84525 0.96908 0.90379 1.21498 0.83017 0.98876 0.95711 1.45844 1.05639 1.61271 1.22873 1.20801 0.85628 0.78278 0.85218 1.90708 1.87663 1.45397 1.22137 1.20805 0.89530 0.98352 1.01861 0.80709 1.21708 1.06469 0.88076 0.84957 1.45789 1.42216 1.33056 1.16356 1.18771 0.78959 0.85773 0.81964 1.90740 1.66882 1.56259 1.33241 1.19699 1.00305 0.95068 1.00346 1.21279 0.93913 0.98104 0.96650 1.21499 1.00619 0.92846 0.99509 1.21789 0.95688 0.99815 0.93018 1.21317 0.95713 0.95219 1.00926 1.19554 0.94893 0.94857 0.94373 0.94853 0.94793 0.95720 0.91010 0.88749 0.95011 0.90231 0.75211 0.87303 0.86627 0.75892 0.85971 0.82575 0.81752 0.82289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.45 11.40 21.65 0.25 -56.20 16 2 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 3 Si 0.96 44.09 29.55 68.60 2.03 46.12 16 4 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 5 H -0.31 -14.79 7.11 99.48 0.71 -14.09 16 6 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 7 C -0.21 -10.28 10.51 84.04 0.88 -9.39 16 8 H 0.09 4.15 7.49 -2.91 -0.02 4.12 16 9 N -0.63 -28.52 3.59 -690.96 -2.48 -31.00 16 10 C 0.15 6.62 7.52 86.43 0.65 7.27 16 11 C -0.13 -4.45 7.86 31.25 0.25 -4.21 16 12 C 0.14 4.57 4.33 45.10 0.20 4.76 16 13 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 14 C 0.13 4.31 5.54 86.38 0.48 4.79 16 15 N -0.71 -19.40 5.16 -463.06 -2.39 -21.79 16 16 C 0.51 14.65 7.01 87.66 0.61 15.27 16 17 O -0.58 -22.04 16.03 -3.05 -0.05 -22.09 16 18 C -0.08 -1.64 2.73 -12.44 -0.03 -1.67 16 19 H 0.18 1.63 8.08 -2.39 -0.02 1.61 16 20 C 0.11 2.16 6.36 86.34 0.55 2.71 16 21 N -0.72 -21.02 5.43 -467.52 -2.54 -23.55 16 22 C 0.56 19.36 7.81 86.80 0.68 20.04 16 23 O -0.59 -25.24 17.37 -3.89 -0.07 -25.31 16 24 C -0.15 -4.39 5.80 -20.15 -0.12 -4.51 16 25 C -0.08 -2.08 9.63 22.47 0.22 -1.86 16 26 C -0.13 -2.28 10.04 22.26 0.22 -2.06 16 27 C -0.09 -1.26 10.04 22.34 0.22 -1.03 16 28 C -0.11 -1.92 9.72 22.21 0.22 -1.70 16 29 C -0.04 -0.81 4.17 -19.65 -0.08 -0.89 16 30 H 0.24 14.25 8.31 -92.70 -0.77 13.48 16 31 H 0.03 1.75 7.17 -2.39 -0.02 1.74 16 32 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.07 2.46 8.10 -2.39 -0.02 2.44 16 34 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 35 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.41 9.71 7.61 -92.71 -0.71 9.01 16 38 H 0.11 1.92 7.24 -2.38 -0.02 1.91 16 39 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.41 12.40 8.92 -92.71 -0.83 11.58 16 41 H 0.12 3.30 7.79 -2.91 -0.02 3.27 16 42 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 43 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 44 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -81.86 368.14 -0.33 -82.19 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: -0.49 Total: 27.55 kcal Atomic # 6 Polarization: 18.68 SS G_CDS: 5.41 Total: 24.09 kcal Atomic # 7 Polarization: -125.38 SS G_CDS: -7.16 Total: -132.54 kcal Atomic # 8 Polarization: -47.29 SS G_CDS: -0.12 Total: -47.41 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -81.86 -0.33 -82.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038343725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.914 kcal (2) G-P(sol) polarization free energy of solvation -81.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds