Wall clock time and date at job start Tue Mar 31 2020 06:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86797 * 119.99793 * 2 1 4 4 H 1.48504 * 109.47168 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47319 * 299.99959 * 3 2 1 6 6 H 1.48501 * 109.47498 * 60.00235 * 3 2 1 7 7 C 1.38809 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00111 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99692 * 359.97438 * 7 2 1 10 10 C 1.47064 * 136.05949 * 359.95182 * 9 7 2 11 11 C 1.53504 * 87.98515 * 152.91156 * 10 9 7 12 12 C 1.47062 * 136.05251 * 179.97438 * 9 7 2 13 13 H 1.09006 * 113.46462 * 92.25338 * 12 9 7 14 14 C 1.53002 * 113.47379 * 321.87369 * 12 9 7 15 15 N 1.46494 * 109.47001 * 74.50169 * 14 12 9 16 16 C 1.34784 * 119.99635 * 180.02562 * 15 14 12 17 17 O 1.21529 * 119.99800 * 0.02562 * 16 15 14 18 18 C 1.48018 * 119.99628 * 179.97438 * 16 15 14 19 19 C 1.39429 * 119.64815 * 179.97438 * 18 16 15 20 20 C 1.38368 * 119.13282 * 179.97438 * 19 18 16 21 21 C 1.39268 * 118.43870 * 0.02562 * 20 19 18 22 22 N 1.39982 * 120.39267 * 179.97438 * 21 20 19 23 23 C 1.35122 * 127.39644 * 179.70900 * 22 21 20 24 24 N 1.30717 * 107.26753 * 179.90031 * 23 22 21 25 25 N 1.28416 * 110.65243 * 0.38128 * 24 23 22 26 26 N 1.28949 * 110.21688 * 359.75773 * 25 24 23 27 27 C 1.39244 * 119.21971 * 359.97438 * 21 20 19 28 28 N 1.31395 * 120.80176 * 359.73520 * 27 21 20 29 29 H 0.96999 * 119.99704 * 359.97438 * 1 2 3 30 30 H 1.08991 * 113.47032 * 267.69415 * 10 9 7 31 31 H 1.09009 * 113.46508 * 38.13710 * 10 9 7 32 32 H 1.08996 * 114.20612 * 272.48369 * 11 10 9 33 33 H 1.08993 * 114.20532 * 139.64975 * 11 10 9 34 34 H 1.09005 * 109.46767 * 314.50235 * 14 12 9 35 35 H 1.09002 * 109.47113 * 194.50576 * 14 12 9 36 36 H 0.96995 * 120.00292 * 0.27801 * 15 14 12 37 37 H 1.07999 * 120.43416 * 359.96239 * 19 18 16 38 38 H 1.07996 * 120.78397 * 179.97438 * 20 19 18 39 39 H 1.08005 * 126.36974 * 0.03210 * 23 22 21 40 40 H 1.07996 * 119.59669 * 180.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.0877 -2.7948 0.0008 11 6 0.3411 -4.0920 -0.6991 12 6 1.6800 -3.8153 -0.0015 13 1 1.7472 -4.2465 0.9975 14 6 2.8976 -4.1404 -0.8690 15 7 4.1151 -3.6901 -0.1900 16 6 5.3175 -3.8724 -0.7712 17 8 5.3914 -4.4099 -1.8587 18 6 6.5476 -3.4170 -0.0855 19 6 7.7876 -3.6097 -0.6931 20 6 8.9306 -3.1793 -0.0428 21 6 8.7954 -2.5674 1.2010 22 7 9.9245 -2.1169 1.8951 23 6 9.9573 -1.5038 3.0987 24 7 11.2110 -1.2570 3.3744 25 7 11.9725 -1.6649 2.4242 26 7 11.2673 -2.1999 1.4865 27 6 7.5239 -2.4090 1.7460 28 7 6.4581 -2.8241 1.0992 29 1 -0.4850 0.8401 0.0004 30 1 -0.4926 -2.9542 1.0001 31 1 -0.7231 -2.1587 -0.6156 32 1 0.3809 -4.0212 -1.7860 33 1 -0.1734 -4.9838 -0.3416 34 1 2.8068 -3.6306 -1.8282 35 1 2.9499 -5.2167 -1.0331 36 1 4.0563 -3.2641 0.6794 37 1 7.8551 -4.0888 -1.6586 38 1 9.9047 -3.3154 -0.4887 39 1 9.1061 -1.2642 3.7189 40 1 7.4120 -1.9349 2.7098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038554726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:42 Heat of formation + Delta-G solvation = 194.313362 kcal Electronic energy + Delta-G solvation = -26733.441817 eV Core-core repulsion = 22781.934080 eV Total energy + Delta-G solvation = -3951.507737 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.71935 -41.10478 -39.27021 -38.12548 -36.02500 -34.35437 -33.14494 -32.57801 -32.27160 -31.17429 -28.24248 -27.84641 -26.02299 -25.12526 -23.55032 -23.51227 -22.72361 -22.06167 -20.74029 -19.42010 -19.30053 -18.23054 -17.22743 -17.15641 -16.73188 -16.61826 -15.60134 -15.51957 -15.27540 -14.99915 -14.59145 -14.27096 -14.12496 -13.96888 -13.68806 -13.35525 -13.23979 -13.02981 -12.80155 -12.47233 -11.97396 -11.60304 -11.55723 -11.19265 -11.06363 -11.02453 -10.84023 -10.65626 -10.54605 -10.47215 -10.12336 -9.88029 -9.87048 -9.44810 -9.31998 -8.87548 -8.71751 -6.96215 -5.82802 -3.15572 -0.49400 0.54345 0.83788 1.14459 1.76296 2.51435 3.09467 3.32529 3.37306 3.40579 3.42947 3.46552 3.55233 3.76551 3.93825 4.24983 4.35817 4.44612 4.50499 4.79840 4.83964 5.02149 5.12346 5.21235 5.31801 5.38173 5.50232 5.60591 5.63687 5.83715 5.94146 5.99119 6.22980 6.33217 6.52520 6.59646 6.71847 7.06641 7.17125 7.32668 7.52593 7.71094 7.86738 7.91649 8.25991 8.97230 9.64383 10.56229 11.34403 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.013119 B = 0.003082 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.782425 B = 9081.802441 C =10551.708925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.908 3.092 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.213 4.213 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.151 3.849 11 C -0.161 4.161 12 C 0.127 3.873 13 H 0.050 0.950 14 C 0.118 3.882 15 N -0.685 5.685 16 C 0.562 3.438 17 O -0.538 6.538 18 C 0.099 3.901 19 C -0.090 4.090 20 C -0.062 4.062 21 C 0.089 3.911 22 N -0.326 5.326 23 C 0.233 3.767 24 N -0.327 5.327 25 N -0.031 5.031 26 N -0.074 5.074 27 C 0.112 3.888 28 N -0.424 5.424 29 H 0.253 0.747 30 H 0.025 0.975 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.415 0.585 37 H 0.166 0.834 38 H 0.160 0.840 39 H 0.245 0.755 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.865 -8.336 4.031 16.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.340 4.340 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.025 3.975 11 C -0.200 4.200 12 C 0.019 3.981 13 H 0.067 0.933 14 C -0.007 4.007 15 N -0.334 5.334 16 C 0.345 3.655 17 O -0.415 6.415 18 C -0.040 4.040 19 C -0.112 4.112 20 C -0.090 4.090 21 C -0.007 4.007 22 N -0.116 5.116 23 C -0.063 4.063 24 N -0.175 5.175 25 N -0.026 5.026 26 N -0.060 5.060 27 C -0.052 4.052 28 N -0.135 5.135 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.251 0.749 37 H 0.183 0.817 38 H 0.178 0.822 39 H 0.261 0.739 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 14.512 -8.214 3.380 17.014 hybrid contribution 0.268 1.135 0.322 1.210 sum 14.779 -7.078 3.701 16.800 Atomic orbital electron populations 1.69838 1.04956 1.25189 1.56448 1.24767 0.95622 0.97400 1.02536 0.86118 0.78661 0.84043 0.77339 1.20627 1.21722 1.21707 1.18901 0.90043 0.81293 1.43805 0.90088 1.45707 1.02642 0.98534 1.85832 1.22036 0.88696 0.90185 0.96546 1.23664 0.96756 0.99127 1.00419 1.22425 0.91864 0.87925 0.95888 0.93304 1.21971 0.82753 0.98498 0.97443 1.45879 1.05339 1.58709 1.23515 1.17661 0.82859 0.79974 0.84997 1.90791 1.86529 1.44115 1.20112 1.21633 0.94848 0.96140 0.91343 1.22155 0.90286 0.97163 1.01569 1.21453 1.01058 0.94705 0.91771 1.18916 0.84550 1.02460 0.94757 1.48947 1.06963 1.40645 1.15073 1.27627 0.99373 0.92821 0.86522 1.74531 0.99231 1.22177 1.21582 1.78112 1.22802 1.05986 0.95699 1.82703 0.83115 1.20547 1.19596 1.22695 0.84590 0.97634 1.00233 1.67777 1.30881 1.07406 1.07421 0.93705 0.95673 0.90932 0.90138 0.92250 0.90596 0.91772 0.74853 0.81691 0.82240 0.73945 0.80909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.29 11.51 55.49 0.64 -25.65 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 21.49 29.55 -169.99 -5.02 16.46 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.21 -5.53 10.55 -15.06 -0.16 -5.68 16 8 H 0.08 2.03 7.52 -52.49 -0.39 1.63 16 9 N -0.60 -14.06 3.65 -177.00 -0.65 -14.70 16 10 C 0.15 3.32 7.39 -8.50 -0.06 3.25 16 11 C -0.16 -2.75 8.03 -26.22 -0.21 -2.96 16 12 C 0.13 2.30 4.10 -72.40 -0.30 2.00 16 13 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 14 C 0.12 1.97 5.52 -4.04 -0.02 1.95 16 15 N -0.69 -11.04 5.32 -61.19 -0.33 -11.37 16 16 C 0.56 8.73 7.81 -12.25 -0.10 8.64 16 17 O -0.54 -9.49 16.31 5.34 0.09 -9.40 16 18 C 0.10 1.24 6.75 -83.01 -0.56 0.68 16 19 C -0.09 -0.90 9.62 -39.09 -0.38 -1.27 16 20 C -0.06 -0.53 9.81 -39.15 -0.38 -0.91 16 21 C 0.09 0.75 6.73 -83.38 -0.56 0.19 16 22 N -0.33 -2.83 3.85 -11.59 -0.04 -2.88 16 23 C 0.23 1.63 12.17 -90.12 -1.10 0.53 16 24 N -0.33 -3.39 12.15 29.65 0.36 -3.03 16 25 N -0.03 -0.37 13.39 60.35 0.81 0.44 16 26 N -0.07 -0.82 13.40 60.35 0.81 -0.01 16 27 C 0.11 0.93 10.65 -17.36 -0.18 0.75 16 28 N -0.42 -4.91 9.53 -9.66 -0.09 -5.00 16 29 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 1.80 7.12 -51.92 -0.37 1.43 16 32 H 0.08 1.37 8.12 -51.93 -0.42 0.95 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.41 6.68 7.71 -40.82 -0.31 6.37 16 37 H 0.17 1.48 7.63 -52.49 -0.40 1.08 16 38 H 0.16 1.11 7.84 -52.49 -0.41 0.70 16 39 H 0.24 0.37 7.21 -52.48 -0.38 0.00 16 40 H 0.17 0.76 6.89 -52.49 -0.36 0.40 16 LS Contribution 353.67 15.07 5.33 5.33 Total: -1.00 -33.71 353.67 -6.51 -40.22 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -4.30 Total: 2.71 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -4.11 Total: 6.88 kcal Atomic # 7 Polarization: -63.71 SS G_CDS: 1.51 Total: -62.20 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.71 -6.51 -40.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038554726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 234.532 kcal (2) G-P(sol) polarization free energy of solvation -33.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 200.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 194.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds