Wall clock time and date at job start Tue Mar 31 2020 06:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 119.99831 * 2 1 4 4 H 1.48507 * 109.46633 * 274.98389 * 3 2 1 5 5 H 1.48496 * 109.47591 * 34.98225 * 3 2 1 6 6 H 1.48497 * 109.47459 * 154.98783 * 3 2 1 7 7 C 1.38808 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00186 * 185.06964 * 7 2 1 9 9 N 1.36938 * 119.99950 * 5.07382 * 7 2 1 10 10 C 1.47577 * 134.49062 * 353.48662 * 9 7 2 11 11 C 1.53946 * 86.11739 * 204.64190 * 10 9 7 12 12 C 1.47579 * 134.49325 * 173.48477 * 9 7 2 13 13 H 1.09000 * 113.87423 * 269.67375 * 12 9 7 14 14 C 1.52997 * 113.77042 * 41.06145 * 12 9 7 15 15 N 1.46500 * 109.47248 * 281.49441 * 14 12 9 16 16 C 1.34771 * 120.00313 * 180.02562 * 15 14 12 17 17 O 1.21535 * 120.00215 * 359.97438 * 16 15 14 18 18 C 1.48021 * 119.99937 * 180.02562 * 16 15 14 19 19 C 1.39431 * 119.64944 * 180.02562 * 18 16 15 20 20 C 1.38372 * 119.13330 * 179.68054 * 19 18 16 21 21 C 1.39272 * 118.43251 * 0.55058 * 20 19 18 22 22 N 1.39984 * 120.38491 * 179.73291 * 21 20 19 23 23 C 1.35127 * 127.39062 * 184.72415 * 22 21 20 24 24 N 1.30713 * 107.26638 * 180.02562 * 23 22 21 25 25 N 1.28418 * 110.65358 * 0.02562 * 24 23 22 26 26 N 1.28942 * 110.21877 * 359.97438 * 25 24 23 27 27 C 1.39240 * 119.22091 * 359.47080 * 21 20 19 28 28 N 1.31394 * 120.80539 * 0.24795 * 27 21 20 29 29 H 0.97000 * 119.99899 * 0.02562 * 1 2 3 30 30 H 1.09006 * 113.76983 * 90.34138 * 10 9 7 31 31 H 1.09002 * 113.87529 * 318.95248 * 10 9 7 32 32 H 1.09003 * 113.74065 * 222.04927 * 11 10 9 33 33 H 1.08995 * 113.84003 * 90.75066 * 11 10 9 34 34 H 1.09002 * 109.47486 * 161.48979 * 14 12 9 35 35 H 1.09000 * 109.47106 * 41.49015 * 14 12 9 36 36 H 0.97008 * 119.99754 * 0.02562 * 15 14 12 37 37 H 1.08000 * 120.42941 * 359.97103 * 19 18 16 38 38 H 1.08001 * 120.78359 * 180.29962 * 20 19 18 39 39 H 1.08002 * 126.36818 * 359.97438 * 23 22 21 40 40 H 1.08006 * 119.59504 * 180.26755 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1072 -1.3949 5 1 1.5043 2.6201 0.8026 6 1 3.5964 1.4122 0.5919 7 6 2.0103 -1.2021 0.0005 8 1 3.0871 -1.2038 0.0832 9 7 1.3296 -2.3858 -0.1038 10 6 -0.0976 -2.7610 -0.1102 11 6 0.3710 -4.1416 0.3841 12 6 1.7288 -3.7985 -0.2551 13 1 1.8207 -4.1223 -1.2918 14 6 2.9319 -4.1947 0.6029 15 7 4.1632 -3.7210 -0.0341 16 6 5.3563 -3.9576 0.5463 17 8 5.4108 -4.5635 1.5985 18 6 6.6003 -3.4785 -0.0971 19 6 7.8308 -3.7278 0.5095 20 6 8.9874 -3.2809 -0.1046 21 6 8.8742 -2.5855 -1.3060 22 7 10.0172 -2.1101 -1.9594 23 6 10.0680 -1.3491 -3.0748 24 7 11.3296 -1.1348 -3.3412 25 7 12.0801 -1.7084 -2.4712 26 7 11.3589 -2.3228 -1.5965 27 6 7.6111 -2.3735 -1.8522 28 7 6.5328 -2.8164 -1.2459 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5429 -2.7783 -1.1050 31 1 -0.7004 -2.2157 0.6162 32 1 -0.1411 -4.9762 -0.0949 33 1 0.4072 -4.2319 1.4697 34 1 2.9673 -5.2797 0.7003 35 1 2.8376 -3.7442 1.5910 36 1 4.1198 -3.2371 -0.8737 37 1 7.8807 -4.2667 1.4441 38 1 9.9549 -3.4635 0.3393 39 1 9.2232 -0.9862 -3.6415 40 1 7.5165 -1.8388 -2.7858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038554727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:46 Heat of formation + Delta-G solvation = 190.469372 kcal Electronic energy + Delta-G solvation = -26682.247052 eV Core-core repulsion = 22730.572628 eV Total energy + Delta-G solvation = -3951.674425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.72532 -41.11418 -39.24283 -37.95631 -36.03191 -34.36561 -33.15230 -32.58676 -32.24151 -31.18272 -28.23206 -27.82458 -26.04643 -25.12943 -23.56433 -23.41694 -22.73617 -22.18833 -20.75801 -19.37812 -19.26685 -18.22004 -17.26994 -17.12852 -16.72641 -16.58612 -15.61118 -15.53795 -15.28375 -15.01077 -14.60024 -14.28282 -14.12927 -13.95765 -13.70354 -13.38029 -13.24186 -13.04854 -12.81052 -12.47520 -11.95395 -11.56285 -11.51731 -11.17714 -11.07295 -11.03085 -10.80525 -10.64528 -10.54584 -10.48041 -10.16496 -9.88554 -9.79369 -9.47709 -9.43880 -8.86310 -8.72961 -6.93794 -5.83058 -3.14674 -0.50069 0.53354 0.82740 1.13765 1.75740 2.50159 3.08090 3.33021 3.38096 3.40886 3.42092 3.45734 3.54876 3.75436 3.92925 4.24319 4.36199 4.43941 4.49617 4.79089 4.83216 5.00981 5.06111 5.20168 5.31104 5.38238 5.55144 5.59858 5.63210 5.84477 5.93121 5.97858 6.21876 6.34057 6.54297 6.59193 6.73194 7.05478 7.20699 7.33937 7.54688 7.69601 7.86182 7.92721 8.24613 8.99174 9.65777 10.54262 11.34274 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.013166 B = 0.003043 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.177807 B = 9198.800228 C =10703.122611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.905 3.095 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.220 4.220 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.162 3.838 11 C -0.156 4.156 12 C 0.125 3.875 13 H 0.051 0.949 14 C 0.119 3.881 15 N -0.686 5.686 16 C 0.562 3.438 17 O -0.537 6.537 18 C 0.099 3.901 19 C -0.090 4.090 20 C -0.062 4.062 21 C 0.089 3.911 22 N -0.326 5.326 23 C 0.234 3.766 24 N -0.327 5.327 25 N -0.031 5.031 26 N -0.074 5.074 27 C 0.112 3.888 28 N -0.425 5.425 29 H 0.253 0.747 30 H 0.029 0.971 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.415 0.585 37 H 0.166 0.834 38 H 0.160 0.840 39 H 0.245 0.755 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.034 -8.056 -4.418 16.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.735 3.265 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.348 4.348 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.036 3.964 11 C -0.195 4.195 12 C 0.017 3.983 13 H 0.068 0.932 14 C -0.005 4.005 15 N -0.335 5.335 16 C 0.345 3.655 17 O -0.415 6.415 18 C -0.040 4.040 19 C -0.112 4.112 20 C -0.090 4.090 21 C -0.007 4.007 22 N -0.117 5.117 23 C -0.063 4.063 24 N -0.175 5.175 25 N -0.026 5.026 26 N -0.060 5.060 27 C -0.052 4.052 28 N -0.135 5.135 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.251 0.749 37 H 0.183 0.817 38 H 0.178 0.822 39 H 0.261 0.739 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 14.653 -8.085 -3.794 17.160 hybrid contribution 0.300 1.239 -0.285 1.307 sum 14.952 -6.846 -4.078 16.943 Atomic orbital electron populations 1.69829 1.05005 1.25324 1.56203 1.24787 0.95592 0.97391 1.02411 0.86219 0.78772 0.84011 0.77496 1.21605 1.21716 1.20758 1.18949 0.90683 0.81947 1.43213 0.90286 1.46079 1.02286 0.99927 1.84548 1.22138 0.87821 0.88518 0.97884 1.23794 0.96142 0.99023 1.00541 1.22507 0.92055 0.87693 0.96017 0.93158 1.21922 0.82312 0.98191 0.98068 1.45883 1.05329 1.55675 1.26625 1.17657 0.82887 0.80418 0.84511 1.90795 1.86693 1.41978 1.22030 1.21629 0.94922 0.95750 0.91657 1.22158 0.90227 0.97575 1.01207 1.21460 1.00934 0.94485 0.92089 1.18914 0.84233 1.01933 0.95595 1.48951 1.06701 1.35924 1.20083 1.27630 0.99177 0.91815 0.87704 1.74531 0.99425 1.21768 1.21794 1.78111 1.22867 1.03918 0.97699 1.82703 0.82854 1.20531 1.19866 1.22696 0.84604 0.97885 0.99966 1.67773 1.30383 1.07310 1.08059 0.93646 0.95346 0.91212 0.92714 0.90460 0.91650 0.90526 0.74875 0.81686 0.82242 0.73942 0.80900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.27 11.51 55.49 0.64 -25.64 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 3 Si 0.90 21.45 29.56 -169.99 -5.02 16.43 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.22 -5.73 10.50 -15.06 -0.16 -5.89 16 8 H 0.08 2.00 7.79 -52.49 -0.41 1.59 16 9 N -0.60 -14.09 3.57 -170.75 -0.61 -14.70 16 10 C 0.16 3.56 7.42 -2.98 -0.02 3.54 16 11 C -0.16 -2.68 7.86 -25.80 -0.20 -2.88 16 12 C 0.12 2.26 4.33 -66.86 -0.29 1.97 16 13 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 14 C 0.12 1.99 5.54 -4.04 -0.02 1.97 16 15 N -0.69 -10.93 5.50 -61.19 -0.34 -11.26 16 16 C 0.56 8.65 7.81 -12.25 -0.10 8.55 16 17 O -0.54 -9.43 16.31 5.33 0.09 -9.34 16 18 C 0.10 1.22 6.75 -83.01 -0.56 0.66 16 19 C -0.09 -0.89 9.62 -39.09 -0.38 -1.26 16 20 C -0.06 -0.52 9.81 -39.15 -0.38 -0.90 16 21 C 0.09 0.74 6.73 -83.38 -0.56 0.18 16 22 N -0.33 -2.80 3.85 -11.59 -0.04 -2.85 16 23 C 0.23 1.61 12.16 -90.12 -1.10 0.52 16 24 N -0.33 -3.37 12.15 29.65 0.36 -3.01 16 25 N -0.03 -0.37 13.39 60.35 0.81 0.44 16 26 N -0.07 -0.81 13.41 60.35 0.81 0.00 16 27 C 0.11 0.91 10.65 -17.37 -0.19 0.73 16 28 N -0.42 -4.82 9.53 -9.66 -0.09 -4.92 16 29 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.71 7.36 -51.93 -0.38 1.33 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.41 6.57 7.79 -40.82 -0.32 6.25 16 37 H 0.17 1.47 7.63 -52.49 -0.40 1.07 16 38 H 0.16 1.10 7.85 -52.49 -0.41 0.68 16 39 H 0.24 0.36 7.23 -52.49 -0.38 -0.02 16 40 H 0.17 0.74 6.92 -52.48 -0.36 0.37 16 LS Contribution 354.47 15.07 5.34 5.34 Total: -1.00 -33.75 354.47 -6.44 -40.19 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -4.33 Total: 2.35 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: -4.05 Total: 6.96 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: 1.53 Total: -61.93 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.75 -6.44 -40.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038554727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.663 kcal (2) G-P(sol) polarization free energy of solvation -33.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 196.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 190.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds