Wall clock time and date at job start Tue Mar 31 2020 05:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34776 * 119.99867 * 2 1 4 4 O 1.21530 * 119.99776 * 185.83409 * 3 2 1 5 5 C 1.48019 * 120.00053 * 5.83587 * 3 2 1 6 6 C 1.39465 * 119.92067 * 35.09129 * 5 3 2 7 7 C 1.38443 * 120.30173 * 180.02562 * 6 5 3 8 8 C 1.38588 * 119.90394 * 359.97321 * 7 6 5 9 9 C 1.40996 * 120.06361 * 0.02562 * 8 7 6 10 10 C 1.38421 * 119.95121 * 359.76709 * 9 8 7 11 11 C 1.47829 * 105.88756 * 180.02562 * 9 8 7 12 12 O 1.21451 * 125.68696 * 180.02562 * 11 9 8 13 13 N 1.34509 * 108.62237 * 0.02562 * 11 9 8 14 14 C 1.34504 * 111.10970 * 359.97438 * 13 11 9 15 15 O 1.21421 * 125.72842 * 180.02562 * 14 13 11 16 16 C 1.46502 * 120.00021 * 180.02562 * 2 1 3 17 17 C 1.53500 * 114.20340 * 59.99664 * 16 2 1 18 18 N 1.47068 * 87.98012 * 220.14655 * 17 16 2 19 19 C 1.36937 * 136.05620 * 207.08104 * 18 17 16 20 20 H 1.08002 * 119.99824 * 354.92208 * 19 18 17 21 21 C 1.38813 * 120.00200 * 174.91250 * 19 18 17 22 22 N 1.31618 * 120.00050 * 184.65029 * 21 19 18 23 23 Si 1.86800 * 119.99669 * 4.64994 * 21 19 18 24 24 H 1.48505 * 109.47076 * 174.49569 * 23 21 19 25 25 H 1.48492 * 109.47276 * 294.49576 * 23 21 19 26 26 H 1.48505 * 109.46985 * 54.49957 * 23 21 19 27 27 C 1.47066 * 87.88707 * 27.34486 * 18 17 16 28 28 H 1.09000 * 109.46416 * 274.63118 * 1 2 3 29 29 H 1.08998 * 109.47244 * 34.63197 * 1 2 3 30 30 H 1.08998 * 109.46930 * 154.63599 * 1 2 3 31 31 H 1.07991 * 119.84923 * 359.97344 * 6 5 3 32 32 H 1.08000 * 120.04701 * 180.02562 * 7 6 5 33 33 H 1.08011 * 120.18971 * 180.22913 * 10 9 8 34 34 H 0.97000 * 124.44221 * 179.97438 * 13 11 9 35 35 H 1.08998 * 113.27994 * 193.06287 * 16 2 1 36 36 H 1.09005 * 113.46421 * 105.37082 * 17 16 2 37 37 H 1.08996 * 113.47155 * 334.92739 * 17 16 2 38 38 H 0.96993 * 120.00067 * 5.00340 * 22 21 19 39 39 H 1.08999 * 113.46828 * 87.43564 * 27 18 17 40 40 H 1.09004 * 113.46865 * 217.87546 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3495 1.1699 -0.1070 5 6 1.4046 2.4458 0.1303 6 6 0.2663 2.5155 0.9332 7 6 -0.4269 3.7071 1.0603 8 6 0.0116 4.8367 0.3877 9 6 1.1617 4.7726 -0.4255 10 6 1.8560 3.5814 -0.5480 11 6 1.3407 6.1308 -0.9811 12 8 2.2288 6.4770 -1.7337 13 7 0.3559 6.9191 -0.5141 14 6 -0.4689 6.2342 0.2981 15 8 -1.4442 6.6860 0.8629 16 6 2.1976 -1.2687 -0.0006 17 6 1.9059 -2.1633 -1.2134 18 7 1.9169 -3.3160 -0.3002 19 6 2.1884 -4.6541 -0.4048 20 1 2.3975 -5.0888 -1.3711 21 6 2.1950 -5.4519 0.7312 22 7 2.5451 -6.7177 0.6444 23 14 1.7070 -4.7288 2.3830 24 1 1.6676 -5.8072 3.4032 25 1 2.7005 -3.7017 2.7866 26 1 0.3648 -4.1029 2.2722 27 6 1.5016 -2.4005 0.7731 28 1 -0.3632 0.0830 1.0243 29 1 -0.3633 0.8456 -0.5840 30 1 -0.3633 -0.9286 -0.4402 31 1 -0.0764 1.6358 1.4574 32 1 -1.3076 3.7566 1.6834 33 1 2.7396 3.5289 -1.1669 34 1 0.2540 7.8583 -0.7342 35 1 3.2576 -1.1542 0.2258 36 1 2.7145 -2.1807 -1.9443 37 1 0.9319 -1.9772 -1.6659 38 1 2.8678 -7.0750 -0.1976 39 1 0.4210 -2.2770 0.8444 40 1 1.9655 -2.6202 1.7348 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044201385.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:32 Heat of formation + Delta-G solvation = 35.675725 kcal Electronic energy + Delta-G solvation = -27040.339522 eV Core-core repulsion = 23017.367239 eV Total energy + Delta-G solvation = -4022.972283 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.75065 -40.66038 -39.16364 -38.90060 -37.85827 -36.18272 -35.04003 -32.49007 -31.78272 -31.67642 -28.22946 -27.26754 -25.85599 -25.52381 -25.20618 -23.38808 -22.41054 -21.00421 -20.38366 -19.16490 -18.55869 -18.32882 -17.62142 -17.23819 -16.95216 -16.81429 -16.09394 -15.82415 -15.63663 -15.44000 -14.93330 -14.59757 -14.54499 -14.53139 -13.89686 -13.75292 -13.28352 -13.21205 -12.99820 -12.58635 -12.27996 -12.11278 -12.02286 -11.69118 -11.43255 -11.19230 -10.96801 -10.95186 -10.68197 -10.48281 -10.16256 -9.80996 -9.72996 -9.47815 -9.25582 -9.02184 -8.52660 -7.27931 -6.40179 -3.34569 -0.64434 0.32903 1.25301 2.01217 2.38714 2.46198 2.67696 3.10551 3.14591 3.30661 3.34964 3.57118 3.70213 3.99267 4.03458 4.37391 4.50344 4.58023 4.62830 4.70716 4.90078 4.94107 5.17785 5.22050 5.24261 5.30272 5.33775 5.45842 5.46012 5.55931 5.65695 5.70733 5.83668 5.95182 6.00834 6.10765 6.24427 6.27009 6.59959 6.76030 6.95312 7.18075 7.25302 7.92863 8.14378 8.87381 9.38578 10.21318 11.11146 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.028244 B = 0.002568 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.113420 B =10901.526845 C =11481.683474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.591 5.591 3 C 0.554 3.446 4 O -0.522 6.522 5 C -0.097 4.097 6 C -0.069 4.069 7 C -0.048 4.048 8 C -0.126 4.126 9 C -0.150 4.150 10 C 0.009 3.991 11 C 0.581 3.419 12 O -0.457 6.457 13 N -0.680 5.680 14 C 0.579 3.421 15 O -0.460 6.460 16 C 0.101 3.899 17 C 0.112 3.888 18 N -0.619 5.619 19 C -0.305 4.305 20 H 0.085 0.915 21 C -0.023 4.023 22 N -0.930 5.930 23 Si 1.073 2.927 24 H -0.294 1.294 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.082 3.918 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.159 0.841 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.431 0.569 35 H 0.128 0.872 36 H 0.052 0.948 37 H 0.041 0.959 38 H 0.262 0.738 39 H 0.048 0.952 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.816 25.939 0.054 27.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.323 5.323 3 C 0.341 3.659 4 O -0.399 6.399 5 C -0.101 4.101 6 C -0.087 4.087 7 C -0.066 4.066 8 C -0.130 4.130 9 C -0.154 4.154 10 C -0.011 4.011 11 C 0.368 3.632 12 O -0.328 6.328 13 N -0.346 5.346 14 C 0.367 3.633 15 O -0.331 6.331 16 C -0.002 4.002 17 C -0.016 4.016 18 N -0.347 5.347 19 C -0.431 4.431 20 H 0.103 0.897 21 C -0.222 4.222 22 N -0.572 5.572 23 Si 0.905 3.095 24 H -0.221 1.221 25 H -0.218 1.218 26 H -0.216 1.216 27 C -0.044 4.044 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.176 0.824 32 H 0.168 0.832 33 H 0.171 0.829 34 H 0.273 0.727 35 H 0.146 0.854 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.400 25.544 1.468 26.930 hybrid contribution -0.025 0.869 -1.824 2.021 sum -8.425 26.414 -0.357 27.727 Atomic orbital electron populations 1.22194 0.79614 1.04211 1.01765 1.47843 1.07076 1.05780 1.71616 1.18182 0.87116 0.83166 0.77476 1.90832 1.13396 1.86845 1.48813 1.20251 0.96194 0.94489 0.99138 1.22114 0.92289 0.98666 0.95644 1.20753 0.99589 0.89586 0.96696 1.20663 0.97339 0.94513 1.00464 1.20330 0.98461 0.94596 1.01973 1.20755 0.97389 0.88268 0.94683 1.18236 0.80299 0.85508 0.79126 1.90884 1.31551 1.78994 1.31327 1.44426 1.28266 1.15516 1.46441 1.18340 0.81466 0.86240 0.77260 1.90863 1.23969 1.75056 1.43222 1.23705 0.97838 0.79096 0.99581 1.22754 0.98902 0.86066 0.93842 1.45785 1.79151 1.03940 1.05837 1.20142 1.46406 0.80176 0.96342 0.89720 1.25740 0.99732 0.95001 1.01699 1.70910 1.45039 1.12555 1.28675 0.83690 0.75950 0.73738 0.76075 1.22081 1.21846 1.21641 1.23298 0.97685 0.88286 0.95156 0.91810 0.90909 0.89506 0.82367 0.83159 0.82929 0.72664 0.85447 0.92947 0.94187 0.92758 0.93456 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.57 7.65 59.85 0.46 1.02 16 2 N -0.59 -7.49 3.12 -174.60 -0.54 -8.04 16 3 C 0.55 7.13 7.36 -12.25 -0.09 7.04 16 4 O -0.52 -8.73 16.36 5.34 0.09 -8.64 16 5 C -0.10 -0.90 5.18 -104.86 -0.54 -1.44 16 6 C -0.07 -0.44 7.80 -39.05 -0.30 -0.75 16 7 C -0.05 -0.27 10.08 -39.38 -0.40 -0.67 16 8 C -0.13 -0.92 6.41 -104.70 -0.67 -1.59 16 9 C -0.15 -1.24 6.39 -104.86 -0.67 -1.91 16 10 C 0.01 0.08 9.64 -38.94 -0.38 -0.30 16 11 C 0.58 4.97 8.45 -12.46 -0.11 4.87 16 12 O -0.46 -5.21 18.04 5.41 0.10 -5.11 16 13 N -0.68 -4.36 5.76 -13.18 -0.08 -4.44 16 14 C 0.58 4.47 8.47 -12.36 -0.10 4.36 16 15 O -0.46 -4.62 18.04 5.43 0.10 -4.52 16 16 C 0.10 1.70 4.55 -67.68 -0.31 1.39 16 17 C 0.11 2.08 8.23 -8.50 -0.07 2.01 16 18 N -0.62 -14.49 3.69 -184.61 -0.68 -15.17 16 19 C -0.30 -8.51 11.09 -15.06 -0.17 -8.67 16 20 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 21 C -0.02 -0.65 5.50 -17.43 -0.10 -0.75 16 22 N -0.93 -28.69 13.70 55.49 0.76 -27.93 16 23 Si 1.07 25.69 25.13 -169.99 -4.27 21.42 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -6.55 6.27 56.52 0.35 -6.19 16 26 H -0.29 -6.32 6.73 56.52 0.38 -5.94 16 27 C 0.08 1.58 5.34 -8.37 -0.04 1.54 16 28 H 0.06 0.41 6.38 -51.93 -0.33 0.08 16 29 H 0.07 0.47 6.49 -51.93 -0.34 0.13 16 30 H 0.09 0.85 5.99 -51.93 -0.31 0.54 16 31 H 0.16 0.76 5.20 -52.49 -0.27 0.49 16 32 H 0.15 0.54 8.06 -52.49 -0.42 0.12 16 33 H 0.15 1.44 8.00 -52.48 -0.42 1.02 16 34 H 0.43 1.72 8.96 -40.82 -0.37 1.36 16 35 H 0.13 2.34 7.34 -51.93 -0.38 1.96 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.04 0.68 7.03 -51.93 -0.37 0.31 16 38 H 0.26 8.00 8.73 -40.82 -0.36 7.64 16 39 H 0.05 0.83 6.39 -51.93 -0.33 0.50 16 40 H 0.06 1.27 4.02 -51.93 -0.21 1.06 16 LS Contribution 334.86 15.07 5.05 5.05 Total: -1.00 -35.53 334.86 -6.79 -42.31 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -3.81 Total: -1.07 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -3.49 Total: 6.14 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.54 Total: -55.58 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.28 Total: -18.27 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -4.27 Total: 21.42 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.53 -6.79 -42.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044201385.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.988 kcal (2) G-P(sol) polarization free energy of solvation -35.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds