Wall clock time and date at job start Tue Mar 31 2020 05:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34776 * 119.99867 * 2 1 4 4 O 1.21530 * 119.99776 * 185.83409 * 3 2 1 5 5 C 1.48019 * 120.00053 * 5.83587 * 3 2 1 6 6 C 1.39465 * 119.92067 * 35.09129 * 5 3 2 7 7 C 1.38443 * 120.30173 * 180.02562 * 6 5 3 8 8 C 1.38588 * 119.90394 * 359.97321 * 7 6 5 9 9 C 1.40996 * 120.06361 * 0.02562 * 8 7 6 10 10 C 1.38421 * 119.95121 * 359.76709 * 9 8 7 11 11 C 1.47829 * 105.88756 * 180.02562 * 9 8 7 12 12 O 1.21451 * 125.68696 * 180.02562 * 11 9 8 13 13 N 1.34509 * 108.62237 * 0.02562 * 11 9 8 14 14 C 1.34504 * 111.10970 * 359.97438 * 13 11 9 15 15 O 1.21421 * 125.72842 * 180.02562 * 14 13 11 16 16 C 1.46502 * 120.00021 * 180.02562 * 2 1 3 17 17 C 1.53500 * 114.20340 * 59.99664 * 16 2 1 18 18 N 1.47068 * 87.98012 * 220.14655 * 17 16 2 19 19 C 1.36937 * 136.05620 * 207.08104 * 18 17 16 20 20 H 1.08002 * 119.99824 * 354.92208 * 19 18 17 21 21 C 1.38813 * 120.00200 * 174.91250 * 19 18 17 22 22 N 1.31618 * 120.00050 * 184.65029 * 21 19 18 23 23 Si 1.86800 * 119.99669 * 4.64994 * 21 19 18 24 24 H 1.48505 * 109.47076 * 174.49569 * 23 21 19 25 25 H 1.48492 * 109.47276 * 294.49576 * 23 21 19 26 26 H 1.48505 * 109.46985 * 54.49957 * 23 21 19 27 27 C 1.47066 * 87.88707 * 27.34486 * 18 17 16 28 28 H 1.09000 * 109.46416 * 274.63118 * 1 2 3 29 29 H 1.08998 * 109.47244 * 34.63197 * 1 2 3 30 30 H 1.08998 * 109.46930 * 154.63599 * 1 2 3 31 31 H 1.07991 * 119.84923 * 359.97344 * 6 5 3 32 32 H 1.08000 * 120.04701 * 180.02562 * 7 6 5 33 33 H 1.08011 * 120.18971 * 180.22913 * 10 9 8 34 34 H 0.97000 * 124.44221 * 179.97438 * 13 11 9 35 35 H 1.08998 * 113.27994 * 193.06287 * 16 2 1 36 36 H 1.09005 * 113.46421 * 105.37082 * 17 16 2 37 37 H 1.08996 * 113.47155 * 334.92739 * 17 16 2 38 38 H 0.96993 * 120.00067 * 5.00340 * 22 21 19 39 39 H 1.08999 * 113.46828 * 87.43564 * 27 18 17 40 40 H 1.09004 * 113.46865 * 217.87546 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3495 1.1699 -0.1070 5 6 1.4046 2.4458 0.1303 6 6 0.2663 2.5155 0.9332 7 6 -0.4269 3.7071 1.0603 8 6 0.0116 4.8367 0.3877 9 6 1.1617 4.7726 -0.4255 10 6 1.8560 3.5814 -0.5480 11 6 1.3407 6.1308 -0.9811 12 8 2.2288 6.4770 -1.7337 13 7 0.3559 6.9191 -0.5141 14 6 -0.4689 6.2342 0.2981 15 8 -1.4442 6.6860 0.8629 16 6 2.1976 -1.2687 -0.0006 17 6 1.9059 -2.1633 -1.2134 18 7 1.9169 -3.3160 -0.3002 19 6 2.1884 -4.6541 -0.4048 20 1 2.3975 -5.0888 -1.3711 21 6 2.1950 -5.4519 0.7312 22 7 2.5451 -6.7177 0.6444 23 14 1.7070 -4.7288 2.3830 24 1 1.6676 -5.8072 3.4032 25 1 2.7005 -3.7017 2.7866 26 1 0.3648 -4.1029 2.2722 27 6 1.5016 -2.4005 0.7731 28 1 -0.3632 0.0830 1.0243 29 1 -0.3633 0.8456 -0.5840 30 1 -0.3633 -0.9286 -0.4402 31 1 -0.0764 1.6358 1.4574 32 1 -1.3076 3.7566 1.6834 33 1 2.7396 3.5289 -1.1669 34 1 0.2540 7.8583 -0.7342 35 1 3.2576 -1.1542 0.2258 36 1 2.7145 -2.1807 -1.9443 37 1 0.9319 -1.9772 -1.6659 38 1 2.8678 -7.0750 -0.1976 39 1 0.4210 -2.2770 0.8444 40 1 1.9655 -2.6202 1.7348 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044201385.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:31 Heat of formation + Delta-G solvation = 7.166828 kcal Electronic energy + Delta-G solvation = -27041.575760 eV Core-core repulsion = 23017.367239 eV Total energy + Delta-G solvation = -4024.208522 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.38526 -41.70776 -40.06793 -39.87772 -38.83442 -36.89278 -36.18528 -34.45197 -32.51891 -32.34579 -29.88515 -28.14162 -27.06102 -26.69453 -25.96328 -24.46525 -23.48663 -21.74580 -21.56773 -20.43645 -19.61452 -19.20055 -19.02597 -18.03386 -17.92565 -17.58803 -17.25995 -16.77100 -16.72560 -16.32041 -15.93331 -15.60255 -15.45634 -15.27596 -15.14732 -15.07748 -14.54503 -14.00623 -13.83472 -13.69151 -13.52277 -13.35607 -13.24063 -13.10524 -12.71218 -12.31622 -12.19978 -11.85258 -11.67774 -11.61409 -11.38823 -11.19363 -11.08791 -10.99265 -10.41217 -10.36251 -9.67090 -9.22425 -8.65376 -5.50614 -1.27684 -0.28347 0.61351 1.39468 1.40711 1.51050 1.57886 1.70408 1.72578 1.79045 2.44523 2.47556 2.56619 2.98986 3.07456 3.18723 3.31167 3.42509 3.51864 3.81386 3.99632 4.04602 4.10183 4.23065 4.29505 4.52970 4.57148 4.61418 4.63149 4.71032 4.71201 4.77697 4.91661 4.95603 5.03411 5.05257 5.14180 5.22797 5.38363 5.52344 5.92896 5.96263 6.26538 6.60019 6.67292 6.94083 7.29309 8.20986 8.88508 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.028244 B = 0.002568 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.113420 B =10901.526845 C =11481.683474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.588 5.588 3 C 0.556 3.444 4 O -0.571 6.571 5 C -0.106 4.106 6 C -0.047 4.047 7 C -0.030 4.030 8 C -0.122 4.122 9 C -0.158 4.158 10 C 0.002 3.998 11 C 0.586 3.414 12 O -0.492 6.492 13 N -0.667 5.667 14 C 0.588 3.412 15 O -0.480 6.480 16 C 0.125 3.875 17 C 0.112 3.888 18 N -0.655 5.655 19 C -0.291 4.291 20 H 0.048 0.952 21 C -0.085 4.085 22 N -0.969 5.969 23 Si 1.111 2.889 24 H -0.307 1.307 25 H -0.271 1.271 26 H -0.248 1.248 27 C 0.083 3.917 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.186 0.814 32 H 0.184 0.816 33 H 0.138 0.862 34 H 0.442 0.558 35 H 0.106 0.894 36 H 0.039 0.961 37 H 0.069 0.931 38 H 0.246 0.754 39 H 0.083 0.917 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.028 28.763 1.897 31.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.319 5.319 3 C 0.345 3.655 4 O -0.451 6.451 5 C -0.110 4.110 6 C -0.065 4.065 7 C -0.049 4.049 8 C -0.126 4.126 9 C -0.161 4.161 10 C -0.018 4.018 11 C 0.375 3.625 12 O -0.364 6.364 13 N -0.334 5.334 14 C 0.376 3.624 15 O -0.352 6.352 16 C 0.020 3.980 17 C -0.015 4.015 18 N -0.384 5.384 19 C -0.419 4.419 20 H 0.066 0.934 21 C -0.277 4.277 22 N -0.614 5.614 23 Si 0.936 3.064 24 H -0.235 1.235 25 H -0.198 1.198 26 H -0.173 1.173 27 C -0.042 4.042 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.099 0.901 31 H 0.203 0.797 32 H 0.202 0.798 33 H 0.156 0.844 34 H 0.286 0.714 35 H 0.124 0.876 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.100 0.900 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.672 28.460 3.275 30.935 hybrid contribution 0.961 0.099 -2.528 2.706 sum -10.711 28.559 0.747 30.511 Atomic orbital electron populations 1.22613 0.76596 1.05213 1.04561 1.47749 1.08707 1.04070 1.71340 1.18648 0.86649 0.84124 0.76112 1.90816 1.15768 1.87569 1.50923 1.19890 0.97495 0.92379 1.01192 1.22355 0.90418 0.99832 0.93863 1.21104 0.99888 0.88241 0.95624 1.20776 0.96677 0.94818 1.00294 1.20202 0.99135 0.94060 1.02749 1.20635 0.97271 0.88844 0.95010 1.18319 0.79928 0.85897 0.78398 1.90873 1.32979 1.79589 1.32993 1.44299 1.27374 1.16013 1.45719 1.18329 0.80966 0.86376 0.76728 1.90869 1.24807 1.75449 1.44045 1.22910 0.97036 0.80685 0.97361 1.22949 0.99786 0.84711 0.94057 1.45758 1.80192 1.03259 1.09157 1.19953 1.44440 0.82698 0.94777 0.93366 1.27198 1.00102 0.94759 1.05615 1.71024 1.48121 1.14365 1.27887 0.83294 0.78173 0.73469 0.71450 1.23507 1.19846 1.17270 1.23494 0.99567 0.87409 0.93734 0.88323 0.88153 0.90141 0.79692 0.79829 0.84402 0.71370 0.87645 0.94303 0.91314 0.94534 0.89950 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.60 7.65 127.77 0.98 1.58 16 2 N -0.59 -12.93 3.12 -824.61 -2.57 -15.50 16 3 C 0.56 13.12 7.36 86.84 0.64 13.76 16 4 O -0.57 -19.00 16.36 -3.81 -0.06 -19.06 16 5 C -0.11 -1.64 5.18 -20.02 -0.10 -1.75 16 6 C -0.05 -0.35 7.80 22.61 0.18 -0.17 16 7 C -0.03 -0.18 10.08 22.40 0.23 0.04 16 8 C -0.12 -1.33 6.41 -19.91 -0.13 -1.46 16 9 C -0.16 -2.30 6.39 -20.02 -0.13 -2.43 16 10 C 0.00 0.03 9.64 22.68 0.22 0.25 16 11 C 0.59 9.35 8.45 86.82 0.73 10.08 16 12 O -0.49 -11.12 18.04 -3.56 -0.06 -11.18 16 13 N -0.67 -7.29 5.76 -432.58 -2.49 -9.78 16 14 C 0.59 7.33 8.47 86.89 0.74 8.07 16 15 O -0.48 -8.15 18.04 -3.47 -0.06 -8.21 16 16 C 0.13 3.95 4.55 45.55 0.21 4.16 16 17 C 0.11 4.01 8.23 83.18 0.68 4.70 16 18 N -0.65 -30.10 3.69 -737.97 -2.72 -32.83 16 19 C -0.29 -16.64 11.09 84.03 0.93 -15.70 16 20 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 21 C -0.09 -5.00 5.50 84.86 0.47 -4.53 16 22 N -0.97 -62.02 13.70 21.65 0.30 -61.73 16 23 Si 1.11 50.67 25.13 68.60 1.72 52.39 16 24 H -0.31 -14.56 7.11 99.48 0.71 -13.85 16 25 H -0.27 -11.42 6.27 99.48 0.62 -10.80 16 26 H -0.25 -9.56 6.73 99.48 0.67 -8.89 16 27 C 0.08 2.93 5.34 83.27 0.44 3.38 16 28 H 0.10 0.55 6.38 -2.39 -0.02 0.54 16 29 H 0.10 0.70 6.49 -2.39 -0.02 0.68 16 30 H 0.08 1.14 5.99 -2.39 -0.01 1.13 16 31 H 0.19 0.43 5.20 -2.91 -0.02 0.42 16 32 H 0.18 0.03 8.06 -2.91 -0.02 0.01 16 33 H 0.14 2.68 8.00 -2.90 -0.02 2.65 16 34 H 0.44 2.78 8.96 -92.71 -0.83 1.95 16 35 H 0.11 3.85 7.34 -2.39 -0.02 3.83 16 36 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.07 2.12 7.03 -2.39 -0.02 2.11 16 38 H 0.25 15.87 8.73 -92.71 -0.81 15.06 16 39 H 0.08 2.41 6.39 -2.39 -0.02 2.39 16 40 H 0.05 2.03 4.02 -2.39 -0.01 2.02 16 Total: -1.00 -82.50 334.86 0.28 -82.22 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: 0.15 Total: 3.68 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: 6.08 Total: 19.99 kcal Atomic # 7 Polarization: -112.34 SS G_CDS: -7.49 Total: -119.83 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -0.19 Total: -38.46 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 1.72 Total: 52.39 kcal Total: -82.50 0.28 -82.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044201385.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.388 kcal (2) G-P(sol) polarization free energy of solvation -82.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds