Wall clock time and date at job start Tue Mar 31 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34778 * 119.99697 * 2 1 4 4 O 1.21556 * 119.99642 * 181.94759 * 3 2 1 5 5 C 1.47877 * 120.00190 * 1.95083 * 3 2 1 6 6 C 1.38818 * 119.32823 * 172.72293 * 5 3 2 7 7 C 1.39857 * 118.37697 * 179.97438 * 6 5 3 8 8 C 1.41389 * 122.95858 * 180.02562 * 7 6 5 9 9 O 1.35231 * 120.99346 * 359.96293 * 8 7 6 10 10 N 1.32495 * 118.01625 * 179.97438 * 8 7 6 11 11 C 1.32365 * 121.48555 * 0.02562 * 10 8 7 12 12 N 1.31296 * 123.09100 * 0.02650 * 11 10 8 13 13 C 1.33696 * 120.37521 * 359.97438 * 12 11 10 14 14 C 1.40609 * 122.62087 * 180.08816 * 13 12 11 15 15 N 1.30918 * 120.15852 * 179.97438 * 14 13 12 16 16 C 1.46503 * 120.00243 * 179.97438 * 2 1 3 17 17 C 1.53941 * 113.73873 * 38.74218 * 16 2 1 18 18 N 1.47817 * 86.03663 * 222.08536 * 17 16 2 19 19 C 1.36937 * 134.46003 * 204.64806 * 18 17 16 20 20 H 1.07997 * 119.99973 * 179.86693 * 19 18 17 21 21 C 1.38810 * 119.99512 * 359.86556 * 19 18 17 22 22 N 1.31616 * 120.00582 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99523 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47302 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46898 * 120.00039 * 23 21 19 26 26 H 1.48496 * 109.47128 * 239.99287 * 23 21 19 27 27 C 1.47583 * 91.04849 * 24.55040 * 18 17 16 28 28 H 1.09004 * 109.47112 * 83.74485 * 1 2 3 29 29 H 1.08998 * 109.47035 * 203.74299 * 1 2 3 30 30 H 1.09003 * 109.47140 * 323.74352 * 1 2 3 31 31 H 1.08000 * 120.80945 * 0.02562 * 6 5 3 32 32 H 0.96700 * 113.99091 * 270.01848 * 9 8 7 33 33 H 1.07995 * 118.45059 * 179.97438 * 11 10 8 34 34 H 1.07998 * 119.92074 * 359.95253 * 14 13 12 35 35 H 1.08998 * 112.94051 * 170.33504 * 16 2 1 36 36 H 1.09001 * 113.77202 * 336.34482 * 17 16 2 37 37 H 1.08998 * 113.76851 * 107.74772 * 17 16 2 38 38 H 0.96994 * 120.00158 * 179.97438 * 22 21 19 39 39 H 1.09007 * 113.77107 * 221.15355 * 27 18 17 40 40 H 1.08996 * 113.77003 * 89.75937 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3539 1.1675 -0.0358 5 6 1.4001 2.4475 0.0436 6 6 2.1043 3.6340 0.1964 7 6 1.3857 4.8333 0.2345 8 6 2.0037 6.0958 0.3860 9 8 3.3465 6.2042 0.5041 10 7 1.2281 7.1698 0.4089 11 6 -0.0873 7.0751 0.2948 12 7 -0.7139 5.9300 0.1532 13 6 -0.0272 4.7834 0.1173 14 6 -0.6494 3.5317 -0.0344 15 7 0.0704 2.4386 -0.0637 16 6 2.1976 -1.2687 0.0006 17 6 1.5556 -2.3554 -0.8808 18 7 1.8611 -3.2878 0.2247 19 6 2.0640 -4.6393 0.3112 20 1 2.2809 -5.0927 1.2671 21 6 1.9907 -5.4264 -0.8298 22 7 1.7258 -4.8740 -1.9947 23 14 2.2668 -7.2702 -0.7118 24 1 2.5441 -7.6398 0.6994 25 1 1.0515 -7.9836 -1.1802 26 1 3.4235 -7.6529 -1.5608 27 6 1.8621 -2.1775 1.1970 28 1 -0.3633 0.1120 -1.0216 29 1 -0.3633 -0.9407 0.4138 30 1 -0.3633 0.8287 0.6078 31 1 3.1808 3.6311 0.2829 32 1 3.6654 6.1651 1.4162 33 1 -0.6725 7.9823 0.3203 34 1 -1.7238 3.4718 -0.1264 35 1 3.2670 -1.1419 -0.1680 36 1 0.4888 -2.2099 -1.0506 37 1 2.1092 -2.5618 -1.7968 38 1 1.6750 -5.4240 -2.7920 39 1 2.6600 -2.2421 1.9369 40 1 0.8856 -1.9796 1.6389 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044239585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:00 Heat of formation + Delta-G solvation = 70.665706 kcal Electronic energy + Delta-G solvation = -27077.292154 eV Core-core repulsion = 23088.129901 eV Total energy + Delta-G solvation = -3989.162252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.96776 -41.45882 -39.98113 -39.14587 -38.71290 -36.05721 -34.57337 -34.11676 -33.66041 -31.80727 -29.64726 -27.95691 -27.00131 -26.65279 -26.53072 -24.99453 -23.99239 -22.58977 -20.75889 -20.37428 -19.78897 -19.25285 -18.82078 -18.45144 -17.57263 -17.07503 -17.00734 -16.71611 -16.57745 -15.89892 -15.78486 -15.62429 -15.53701 -15.28384 -14.72465 -14.68049 -14.15127 -13.83547 -13.65777 -13.45630 -13.30805 -13.19343 -13.09096 -12.82662 -12.58886 -12.13925 -12.09461 -12.03968 -11.94128 -11.56979 -11.48311 -11.37374 -10.93467 -10.84899 -10.27530 -9.84944 -9.48948 -8.97672 -7.93624 -5.28380 -1.35162 -0.87366 0.28571 1.21038 1.45807 1.47348 1.57774 1.79077 1.98141 2.09293 2.46775 2.71949 2.73478 2.85964 2.96034 3.16668 3.25890 3.38770 3.42589 3.66312 3.79842 3.97041 4.18429 4.24401 4.28962 4.41397 4.51030 4.51478 4.71173 4.80610 4.85346 4.95371 4.99592 5.14962 5.20331 5.34769 5.45099 5.56355 5.65690 5.86963 6.27499 6.32386 6.43550 6.77515 6.87462 6.97363 7.56072 8.49033 9.23726 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.034526 B = 0.002374 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.784786 B =11792.644632 C =12275.345945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.578 5.578 3 C 0.561 3.439 4 O -0.573 6.573 5 C 0.041 3.959 6 C -0.036 4.036 7 C -0.173 4.173 8 C 0.429 3.571 9 O -0.470 6.470 10 N -0.548 5.548 11 C 0.336 3.664 12 N -0.504 5.504 13 C 0.129 3.871 14 C 0.161 3.839 15 N -0.430 5.430 16 C 0.111 3.889 17 C 0.162 3.838 18 N -0.636 5.636 19 C -0.234 4.234 20 H 0.088 0.912 21 C -0.067 4.067 22 N -0.954 5.954 23 Si 0.983 3.017 24 H -0.263 1.263 25 H -0.290 1.290 26 H -0.293 1.293 27 C 0.118 3.882 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.123 0.877 31 H 0.165 0.835 32 H 0.440 0.560 33 H 0.245 0.755 34 H 0.218 0.782 35 H 0.099 0.901 36 H 0.037 0.963 37 H 0.039 0.961 38 H 0.250 0.750 39 H 0.056 0.944 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.056 26.984 7.630 28.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.308 5.308 3 C 0.349 3.651 4 O -0.453 6.453 5 C -0.084 4.084 6 C -0.059 4.059 7 C -0.184 4.184 8 C 0.228 3.772 9 O -0.283 6.283 10 N -0.274 5.274 11 C 0.048 3.952 12 N -0.220 5.220 13 C -0.002 4.002 14 C -0.014 4.014 15 N -0.141 5.141 16 C 0.006 3.994 17 C 0.036 3.964 18 N -0.363 5.363 19 C -0.362 4.362 20 H 0.106 0.894 21 C -0.260 4.260 22 N -0.602 5.602 23 Si 0.811 3.189 24 H -0.188 1.188 25 H -0.217 1.217 26 H -0.220 1.220 27 C -0.008 4.008 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.140 0.860 31 H 0.182 0.818 32 H 0.306 0.694 33 H 0.261 0.739 34 H 0.234 0.766 35 H 0.117 0.883 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.254 26.529 6.876 28.110 hybrid contribution 1.248 -1.243 0.100 1.764 sum -5.006 25.287 6.976 26.705 Atomic orbital electron populations 1.22484 0.76542 1.03681 1.03414 1.47900 1.08951 1.04526 1.69373 1.18203 0.86385 0.83698 0.76779 1.90765 1.14298 1.87388 1.52849 1.20720 0.90304 0.93114 1.04231 1.22021 1.02435 0.89518 0.91912 1.19798 0.95977 0.95342 1.07255 1.19642 0.85359 0.86108 0.86123 1.84583 1.13103 1.94648 1.35948 1.68208 1.08301 1.33290 1.17588 1.25765 0.86059 0.96973 0.86359 1.68816 1.39582 0.98070 1.15545 1.20345 0.89254 0.95851 0.94745 1.23753 1.02253 0.83359 0.92040 1.67997 1.05891 1.30613 1.09640 1.23460 0.97045 0.80740 0.98157 1.22513 0.96788 0.84540 0.92584 1.46031 1.82305 1.02488 1.05494 1.19434 1.40532 0.81594 0.94636 0.89413 1.25689 1.02417 1.02800 0.95096 1.70012 1.56117 1.35553 0.98538 0.84945 0.76803 0.79260 0.77902 1.18759 1.21723 1.21968 1.23058 0.99377 0.85265 0.93122 0.92203 0.92240 0.85990 0.81760 0.69353 0.73917 0.76607 0.88332 0.94499 0.94231 0.94128 0.92617 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.20 7.99 127.77 1.02 3.22 16 2 N -0.58 -19.49 3.09 -831.68 -2.57 -22.07 16 3 C 0.56 18.45 7.65 86.80 0.66 19.12 16 4 O -0.57 -22.20 15.78 -3.89 -0.06 -22.27 16 5 C 0.04 1.02 6.62 41.60 0.28 1.30 16 6 C -0.04 -0.74 9.23 22.80 0.21 -0.53 16 7 C -0.17 -3.05 5.76 -21.22 -0.12 -3.17 16 8 C 0.43 6.55 7.91 85.37 0.67 7.22 16 9 O -0.47 -5.54 13.04 -85.13 -1.11 -6.65 16 10 N -0.55 -7.96 10.43 -311.93 -3.25 -11.21 16 11 C 0.34 3.76 12.21 180.86 2.21 5.97 16 12 N -0.50 -7.18 10.46 -193.58 -2.02 -9.21 16 13 C 0.13 2.15 6.64 40.34 0.27 2.41 16 14 C 0.16 2.47 11.26 85.41 0.96 3.43 16 15 N -0.43 -8.92 5.91 -183.88 -1.09 -10.01 16 16 C 0.11 4.54 4.40 46.75 0.21 4.75 16 17 C 0.16 7.91 6.93 86.44 0.60 8.51 16 18 N -0.64 -33.28 3.70 -716.68 -2.65 -35.94 16 19 C -0.23 -13.26 10.70 84.03 0.90 -12.36 16 20 H 0.09 4.73 7.83 -2.91 -0.02 4.71 16 21 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 22 N -0.95 -58.20 11.39 21.65 0.25 -57.96 16 23 Si 0.98 46.02 29.55 68.60 2.03 48.05 16 24 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 25 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 26 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 27 C 0.12 4.87 8.43 86.49 0.73 5.60 16 28 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.06 1.73 6.12 -2.39 -0.01 1.71 16 30 H 0.12 2.77 5.25 -3.28 -0.02 2.75 16 31 H 0.16 3.31 7.40 -2.91 -0.02 3.29 16 32 H 0.44 0.47 9.06 -74.06 -0.67 -0.20 16 33 H 0.25 0.62 8.06 -2.91 -0.02 0.60 16 34 H 0.22 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.10 4.42 7.21 -2.39 -0.02 4.41 16 36 H 0.04 1.77 6.69 -2.39 -0.02 1.76 16 37 H 0.04 2.21 7.17 -2.39 -0.02 2.20 16 38 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 39 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 40 H 0.06 2.22 6.94 -2.39 -0.02 2.21 16 Total: -1.00 -77.79 340.26 -0.97 -78.77 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 0.45 Total: 6.40 kcal Atomic # 6 Polarization: 33.03 SS G_CDS: 9.06 Total: 42.09 kcal Atomic # 7 Polarization: -135.05 SS G_CDS: -11.34 Total: -146.39 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -1.17 Total: -28.92 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -77.79 -0.97 -78.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044239585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.431 kcal (2) G-P(sol) polarization free energy of solvation -77.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds