Wall clock time and date at job start Tue Mar 31 2020 06:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99884 * 2 1 4 4 H 1.48504 * 109.46906 * 270.00181 * 3 2 1 5 5 H 1.48502 * 109.46782 * 29.99872 * 3 2 1 6 6 H 1.48496 * 109.47112 * 150.00349 * 3 2 1 7 7 C 1.38813 * 120.00407 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99878 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99688 * 359.97438 * 7 2 1 10 10 C 1.47427 * 125.64921 * 359.95731 * 9 7 2 11 11 C 1.55388 * 104.87358 * 204.16929 * 10 9 7 12 12 H 1.08997 * 111.02382 * 80.97943 * 11 10 9 13 13 N 1.46502 * 111.18629 * 204.98275 * 11 10 9 14 14 C 1.34781 * 119.99829 * 267.03423 * 13 11 10 15 15 O 1.21521 * 119.99607 * 0.02562 * 14 13 11 16 16 C 1.48147 * 120.00020 * 180.02562 * 14 13 11 17 17 C 1.39437 * 120.09588 * 179.72581 * 16 14 13 18 18 N 1.32081 * 119.87251 * 179.77886 * 17 16 14 19 19 C 1.32137 * 120.07285 * 0.49912 * 18 17 16 20 20 C 1.38731 * 120.19252 * 359.73268 * 19 18 17 21 21 N 1.31801 * 120.12740 * 0.02562 * 20 19 18 22 22 C 1.55162 * 101.36242 * 323.01463 * 11 10 9 23 23 H 1.09002 * 110.71348 * 153.95038 * 22 11 10 24 24 N 1.46498 * 110.72302 * 277.04375 * 22 11 10 25 25 C 1.35308 * 125.86965 * 82.55778 * 24 22 11 26 26 C 1.35347 * 106.17713 * 179.97438 * 25 24 22 27 27 N 1.33774 * 106.49812 * 0.02562 * 26 25 24 28 28 N 1.28637 * 108.88333 * 0.02562 * 27 26 25 29 29 C 1.47015 * 125.64766 * 179.97438 * 9 7 2 30 30 H 0.96994 * 120.00038 * 359.97438 * 1 2 3 31 31 H 1.09002 * 110.36692 * 323.00628 * 10 9 7 32 32 H 1.09001 * 110.36795 * 85.21704 * 10 9 7 33 33 H 0.97000 * 120.00335 * 87.04084 * 13 11 10 34 34 H 1.08001 * 120.06472 * 0.02562 * 17 16 14 35 35 H 1.07999 * 119.90453 * 179.70990 * 19 18 17 36 36 H 1.07998 * 119.93757 * 180.02562 * 20 19 18 37 37 H 1.07997 * 126.91159 * 359.97438 * 25 24 22 38 38 H 1.08002 * 126.75518 * 179.97438 * 26 25 24 39 39 H 1.08998 * 109.88472 * 59.48996 * 29 9 7 40 40 H 1.09003 * 110.01483 * 298.39748 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5478 1.4402 0.6999 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1414 -2.5332 0.0009 11 6 -0.4028 -3.9363 0.6152 12 1 -0.3510 -3.9026 1.7034 13 7 -1.6887 -4.4784 0.1693 14 6 -2.7971 -4.2797 0.9100 15 8 -2.7297 -3.6505 1.9474 16 6 -4.0974 -4.8282 0.4593 17 6 -5.2442 -4.6288 1.2269 18 7 -6.4020 -5.1161 0.8188 19 6 -6.4718 -5.7998 -0.3098 20 6 -5.3317 -6.0041 -1.0733 21 7 -4.1732 -5.5173 -0.6758 22 6 0.7786 -4.7524 0.0272 23 1 1.0261 -5.5936 0.6747 24 7 0.4649 -5.2172 -1.3262 25 6 0.5930 -4.4938 -2.4625 26 6 0.1967 -5.3038 -3.4718 27 7 -0.1505 -6.4676 -2.9110 28 7 0.0190 -6.3836 -1.6386 29 6 1.9319 -3.7274 -0.0016 30 1 -0.4850 0.8400 0.0004 31 1 -0.5987 -1.7587 0.6167 32 1 -0.5284 -2.4851 -1.0170 33 1 -1.7425 -4.9803 -0.6590 34 1 -5.1866 -4.0734 2.1515 35 1 -7.4190 -6.2010 -0.6386 36 1 -5.3935 -6.5632 -1.9952 37 1 0.9414 -3.4751 -2.5470 38 1 0.1659 -5.0585 -4.5232 39 1 2.5596 -3.8509 0.8809 40 1 2.5288 -3.8660 -0.9031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069891748.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:06 Heat of formation + Delta-G solvation = 164.928800 kcal Electronic energy + Delta-G solvation = -28343.466383 eV Core-core repulsion = 24390.684436 eV Total energy + Delta-G solvation = -3952.781947 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.04345 -41.37247 -39.44040 -37.83570 -34.77696 -34.16817 -33.45810 -31.96511 -31.69270 -30.65521 -28.93040 -27.73630 -25.66841 -24.93795 -24.54385 -22.68778 -22.35045 -21.35601 -20.20206 -20.18116 -18.48374 -17.93075 -17.35255 -17.08020 -16.94821 -15.89354 -15.49999 -15.46728 -15.13525 -14.75735 -14.65572 -14.14040 -14.08610 -13.97348 -13.43712 -13.11786 -12.94876 -12.74430 -12.45067 -11.96131 -11.90548 -11.52284 -11.44450 -11.40056 -11.05549 -10.84325 -10.71797 -10.53978 -10.32479 -10.21441 -10.01092 -9.85507 -9.67120 -9.31499 -9.06444 -8.87846 -8.77365 -7.16801 -5.87198 -3.33862 0.20632 0.82346 1.89921 2.53707 2.70995 2.85590 3.05132 3.29286 3.34763 3.37410 3.64372 3.79951 3.95932 4.21375 4.27992 4.52940 4.65422 4.67932 4.89368 4.91996 5.00329 5.04712 5.29177 5.29777 5.38614 5.48445 5.57785 5.70908 5.75681 6.03229 6.05826 6.10763 6.15978 6.42227 6.45995 6.87834 6.92920 7.08552 7.34773 7.36764 7.57935 7.64063 8.06693 8.21209 8.78592 8.94452 9.55294 10.12577 11.16090 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.011464 B = 0.004436 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.798607 B = 6310.016039 C = 7910.699966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.919 3.081 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.237 4.237 8 H 0.083 0.917 9 N -0.597 5.597 10 C 0.145 3.855 11 C 0.106 3.894 12 H 0.120 0.880 13 N -0.693 5.693 14 C 0.575 3.425 15 O -0.519 6.519 16 C 0.036 3.964 17 C 0.109 3.891 18 N -0.440 5.440 19 C 0.068 3.932 20 C 0.051 3.949 21 N -0.409 5.409 22 C 0.117 3.883 23 H 0.121 0.879 24 N -0.279 5.279 25 C -0.019 4.019 26 C -0.068 4.068 27 N -0.274 5.274 28 N -0.099 5.099 29 C 0.130 3.870 30 H 0.257 0.743 31 H 0.123 0.877 32 H 0.023 0.977 33 H 0.408 0.592 34 H 0.184 0.816 35 H 0.176 0.824 36 H 0.177 0.823 37 H 0.194 0.806 38 H 0.185 0.815 39 H 0.056 0.944 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.047 -11.109 -2.689 13.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.198 4.198 3 Si 0.749 3.251 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.364 4.364 8 H 0.101 0.899 9 N -0.325 5.325 10 C 0.019 3.981 11 C -0.001 4.001 12 H 0.138 0.862 13 N -0.344 5.344 14 C 0.358 3.642 15 O -0.394 6.394 16 C -0.105 4.105 17 C -0.051 4.051 18 N -0.155 5.155 19 C -0.093 4.093 20 C -0.111 4.111 21 N -0.127 5.127 22 C 0.014 3.986 23 H 0.139 0.861 24 N -0.072 5.072 25 C -0.170 4.170 26 C -0.225 4.225 27 N -0.141 5.141 28 N -0.078 5.078 29 C 0.002 3.998 30 H 0.068 0.932 31 H 0.140 0.860 32 H 0.041 0.959 33 H 0.245 0.755 34 H 0.201 0.799 35 H 0.193 0.807 36 H 0.194 0.806 37 H 0.211 0.789 38 H 0.203 0.797 39 H 0.074 0.926 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.410 -11.774 -1.352 13.978 hybrid contribution 0.743 1.667 -0.992 2.077 sum -6.668 -10.107 -2.343 12.333 Atomic orbital electron populations 1.69735 1.04984 1.25461 1.55992 1.24835 0.95712 0.97999 1.01251 0.86022 0.78566 0.82879 0.77660 1.21429 1.21488 1.20493 1.19022 0.90558 0.81611 1.45209 0.89878 1.44379 1.01208 0.99396 1.87500 1.22500 0.84954 0.91475 0.99155 1.23264 0.79393 0.96255 1.01224 0.86206 1.45608 1.07332 1.55169 1.26338 1.17564 0.82683 0.79983 0.83929 1.90837 1.85161 1.39896 1.23496 1.22272 0.96390 0.98534 0.93342 1.23859 0.87038 0.94347 0.99828 1.68629 1.26182 1.06917 1.13733 1.24101 1.00421 0.93958 0.90845 1.23879 0.88449 0.97835 1.00949 1.68408 1.27743 1.04547 1.11984 1.23210 0.98443 0.98847 0.78088 0.86117 1.47440 1.41562 1.09555 1.08661 1.23886 1.06322 1.01626 0.85175 1.23526 1.06760 0.91158 1.01017 1.75034 1.17906 1.21956 0.99160 1.78265 1.17074 1.02582 1.09882 1.21660 0.92052 0.85268 1.00772 0.93241 0.85975 0.95941 0.75527 0.79859 0.80731 0.80594 0.78935 0.79748 0.92599 0.93971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.97 10.09 55.49 0.56 -24.41 16 2 C 0.00 -0.03 5.49 -17.43 -0.10 -0.12 16 3 Si 0.92 20.63 29.55 -169.99 -5.02 15.61 16 4 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.24 -5.86 10.27 -15.06 -0.15 -6.02 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.60 -13.16 3.40 -169.77 -0.58 -13.74 16 10 C 0.15 3.18 5.15 -2.27 -0.01 3.17 16 11 C 0.11 1.90 3.31 -65.52 -0.22 1.68 16 12 H 0.12 2.20 7.54 -51.93 -0.39 1.81 16 13 N -0.69 -11.98 5.16 -52.32 -0.27 -12.25 16 14 C 0.58 10.08 7.81 -12.19 -0.10 9.98 16 15 O -0.52 -10.25 15.99 5.35 0.09 -10.17 16 16 C 0.04 0.54 6.75 -82.85 -0.56 -0.02 16 17 C 0.11 1.45 10.77 -17.00 -0.18 1.26 16 18 N -0.44 -5.26 10.49 -12.71 -0.13 -5.40 16 19 C 0.07 0.62 11.23 -17.24 -0.19 0.42 16 20 C 0.05 0.51 11.22 -17.38 -0.20 0.32 16 21 N -0.41 -5.67 9.71 -9.62 -0.09 -5.77 16 22 C 0.12 1.84 3.96 -66.09 -0.26 1.58 16 23 H 0.12 1.63 8.14 -51.93 -0.42 1.20 16 24 N -0.28 -4.48 2.31 -52.98 -0.12 -4.60 16 25 C -0.02 -0.30 9.25 -17.05 -0.16 -0.45 16 26 C -0.07 -1.00 12.05 -17.74 -0.21 -1.21 16 27 N -0.27 -4.60 12.41 30.24 0.38 -4.22 16 28 N -0.10 -1.68 12.43 60.35 0.75 -0.93 16 29 C 0.13 2.25 6.29 -3.07 -0.02 2.23 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.12 3.21 5.87 -51.93 -0.31 2.90 16 32 H 0.02 0.53 7.37 -51.93 -0.38 0.15 16 33 H 0.41 7.04 6.26 -40.82 -0.26 6.79 16 34 H 0.18 2.27 7.65 -52.49 -0.40 1.87 16 35 H 0.18 0.87 8.06 -52.49 -0.42 0.44 16 36 H 0.18 1.14 8.06 -52.49 -0.42 0.71 16 37 H 0.19 3.18 7.69 -52.49 -0.40 2.77 16 38 H 0.19 2.09 8.06 -52.49 -0.42 1.67 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.04 0.72 7.30 -51.93 -0.38 0.34 16 LS Contribution 342.72 15.07 5.16 5.16 Total: -1.00 -30.79 342.72 -5.82 -36.62 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -4.18 Total: 11.27 kcal Atomic # 6 Polarization: 15.17 SS G_CDS: -2.36 Total: 12.82 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: 0.49 Total: -71.31 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.79 -5.82 -36.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069891748.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.544 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds