Wall clock time and date at job start Tue Mar 31 2020 06:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 119.99765 * 2 1 4 4 H 1.48497 * 109.47017 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47317 * 119.99809 * 3 2 1 6 6 H 1.48505 * 109.46985 * 239.99830 * 3 2 1 7 7 C 1.38812 * 120.00174 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00125 * 208.44848 * 7 2 1 9 9 N 1.36932 * 119.99864 * 28.45918 * 7 2 1 10 10 C 1.47424 * 125.65125 * 19.39910 * 9 7 2 11 11 C 1.55124 * 104.72207 * 155.82185 * 10 9 7 12 12 H 1.09007 * 110.90628 * 155.28013 * 11 10 9 13 13 N 1.46500 * 111.22773 * 279.17827 * 11 10 9 14 14 C 1.34779 * 119.99997 * 267.20923 * 13 11 10 15 15 O 1.21513 * 119.99823 * 359.97438 * 14 13 11 16 16 C 1.48134 * 119.99600 * 179.97438 * 14 13 11 17 17 C 1.40117 * 121.14091 * 179.71807 * 16 14 13 18 18 C 1.38504 * 117.82139 * 179.73837 * 17 16 14 19 19 N 1.31917 * 119.96796 * 0.54547 * 18 17 16 20 20 N 1.28280 * 122.51649 * 359.71636 * 19 18 17 21 21 C 1.31922 * 122.32602 * 0.02562 * 20 19 18 22 22 C 1.55155 * 101.48678 * 37.30199 * 11 10 9 23 23 H 1.08994 * 110.72121 * 82.69650 * 22 11 10 24 24 N 1.46508 * 110.71880 * 205.96955 * 22 11 10 25 25 C 1.35316 * 125.86610 * 79.68944 * 24 22 11 26 26 C 1.35346 * 106.17062 * 179.90290 * 25 24 22 27 27 N 1.33774 * 106.49856 * 0.35354 * 26 25 24 28 28 N 1.28636 * 108.88335 * 359.77268 * 27 26 25 29 29 C 1.47023 * 125.64676 * 199.71776 * 9 7 2 30 30 H 0.96999 * 119.99939 * 185.65640 * 1 2 3 31 31 H 1.09001 * 110.36928 * 274.75730 * 10 9 7 32 32 H 1.09010 * 110.36519 * 37.07542 * 10 9 7 33 33 H 0.96999 * 119.99881 * 87.20451 * 13 11 10 34 34 H 1.07998 * 121.09216 * 0.02562 * 17 16 14 35 35 H 1.07996 * 120.01768 * 180.23708 * 18 17 16 36 36 H 1.07997 * 120.17482 * 179.97438 * 21 20 19 37 37 H 1.07997 * 126.91146 * 0.02562 * 25 24 22 38 38 H 1.07997 * 126.75006 * 180.12054 * 26 25 24 39 39 H 1.08998 * 109.87770 * 300.43121 * 29 9 7 40 40 H 1.08996 * 109.88326 * 61.44422 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7464 -0.0006 5 1 3.1038 1.6966 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 2.9924 -1.2584 0.4461 9 7 1.4497 -2.3166 -0.5641 10 6 0.3427 -2.3223 -1.5377 11 6 0.4996 -3.6612 -2.3052 12 1 -0.4539 -3.9839 -2.7235 13 7 1.5201 -3.5567 -3.3511 14 6 1.1654 -3.2221 -4.6076 15 8 -0.0009 -3.0077 -4.8729 16 6 2.1973 -3.1159 -5.6650 17 6 1.8547 -2.7755 -6.9803 18 6 2.8753 -2.6902 -7.9127 19 7 4.1199 -2.9369 -7.5518 20 7 4.4396 -3.2542 -6.3506 21 6 3.5450 -3.3577 -5.3865 22 6 0.9607 -4.6149 -1.1715 23 1 0.1053 -4.9820 -0.6046 24 7 1.7399 -5.7295 -1.7167 25 6 3.0436 -5.6843 -2.0764 26 6 3.3550 -6.9239 -2.5216 27 7 2.2392 -7.6550 -2.4213 28 7 1.3005 -6.9182 -1.9410 29 6 1.8477 -3.7060 -0.2947 30 1 -0.4850 -0.8360 0.0828 31 1 -0.6167 -2.2883 -1.0215 32 1 0.4358 -1.4796 -2.2229 33 1 2.4510 -3.7282 -3.1393 34 1 0.8290 -2.5814 -7.2570 35 1 2.6517 -2.4268 -8.9359 36 1 3.8528 -3.6277 -4.3872 37 1 3.7034 -4.8313 -2.0179 38 1 4.3144 -7.2563 -2.8894 39 1 2.8964 -3.8483 -0.5556 40 1 1.6931 -3.9383 0.7589 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070037121.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:55 Heat of formation + Delta-G solvation = 168.993838 kcal Electronic energy + Delta-G solvation = -28524.281747 eV Core-core repulsion = 24571.676074 eV Total energy + Delta-G solvation = -3952.605674 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.34917 -41.45084 -39.90409 -38.16478 -34.64717 -34.07137 -33.44601 -32.82089 -31.91318 -31.13437 -29.14244 -28.04773 -25.88573 -24.91912 -24.70130 -23.01566 -22.57140 -21.60572 -20.60938 -20.42015 -18.76981 -18.07794 -17.88188 -17.38809 -16.70516 -16.28251 -15.85075 -15.54368 -15.47124 -15.08707 -14.75523 -14.56736 -14.28595 -14.04389 -13.75770 -13.72427 -13.53488 -13.30979 -12.31732 -12.10021 -11.81907 -11.69240 -11.32188 -11.26681 -11.04743 -10.96104 -10.83326 -10.66649 -10.52193 -10.44048 -10.20074 -10.06814 -9.90379 -9.85959 -9.47469 -9.19935 -8.69767 -7.32258 -6.39371 -3.50528 0.03569 0.54031 1.54111 2.18472 2.53835 2.54363 2.77526 3.34037 3.36299 3.38487 3.55915 3.72723 3.97432 4.18929 4.21312 4.24995 4.31387 4.34398 4.48587 4.53193 4.82938 4.88357 4.94227 5.01524 5.12801 5.17041 5.27576 5.31323 5.45966 5.55592 5.71735 5.74689 5.82189 5.93199 6.05791 6.10404 6.52317 6.54533 6.59346 7.15298 7.42912 7.87032 8.16635 8.31042 8.48569 8.65273 9.46753 9.93426 10.92377 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.008680 B = 0.005512 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.016966 B = 5078.852377 C = 7044.845824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.014 4.014 3 Si 1.065 2.935 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.292 1.292 7 C -0.349 4.349 8 H 0.069 0.931 9 N -0.591 5.591 10 C 0.136 3.864 11 C 0.121 3.879 12 H 0.113 0.887 13 N -0.699 5.699 14 C 0.566 3.434 15 O -0.520 6.520 16 C -0.127 4.127 17 C -0.057 4.057 18 C 0.038 3.962 19 N -0.228 5.228 20 N -0.238 5.238 21 C 0.073 3.927 22 C 0.118 3.882 23 H 0.136 0.864 24 N -0.270 5.270 25 C -0.059 4.059 26 C -0.050 4.050 27 N -0.277 5.277 28 N -0.082 5.082 29 C 0.125 3.875 30 H 0.269 0.731 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.398 0.602 34 H 0.165 0.835 35 H 0.182 0.818 36 H 0.171 0.829 37 H 0.188 0.812 38 H 0.189 0.811 39 H 0.040 0.960 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.074 -7.553 -9.441 13.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.218 4.218 3 Si 0.893 3.107 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.219 1.219 7 C -0.476 4.476 8 H 0.087 0.913 9 N -0.320 5.320 10 C 0.009 3.991 11 C 0.014 3.986 12 H 0.131 0.869 13 N -0.351 5.351 14 C 0.350 3.650 15 O -0.396 6.396 16 C -0.141 4.141 17 C -0.087 4.087 18 C -0.126 4.126 19 N -0.071 5.071 20 N -0.080 5.080 21 C -0.091 4.091 22 C 0.015 3.985 23 H 0.154 0.846 24 N -0.063 5.063 25 C -0.210 4.210 26 C -0.207 4.207 27 N -0.142 5.142 28 N -0.061 5.061 29 C -0.001 4.001 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.235 0.765 34 H 0.182 0.818 35 H 0.199 0.801 36 H 0.188 0.812 37 H 0.205 0.795 38 H 0.206 0.794 39 H 0.058 0.942 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.457 -6.720 -9.982 12.832 hybrid contribution 0.041 -0.792 0.859 1.169 sum 4.498 -7.512 -9.123 12.645 Atomic orbital electron populations 1.70832 1.06748 1.30299 1.46246 1.25866 0.96306 1.01343 0.98296 0.83529 0.74927 0.75835 0.76394 1.20855 1.21657 1.21913 1.19659 0.99950 0.87271 1.40722 0.91296 1.44487 1.40931 0.99398 1.47153 1.22101 0.92709 0.93168 0.91100 1.22786 0.92056 0.97266 0.86482 0.86934 1.45639 1.11476 1.69807 1.08174 1.17816 0.87795 0.77383 0.81960 1.90808 1.18372 1.48759 1.81630 1.21231 0.95295 1.01681 0.95884 1.22658 1.02791 0.91720 0.91533 1.24411 0.89797 0.96481 1.01863 1.72897 1.18257 1.05872 1.10067 1.73086 1.30337 1.08888 0.95641 1.24488 0.89602 0.93902 1.01155 1.23322 0.96163 0.82989 0.96068 0.84590 1.47451 1.08620 1.10026 1.40217 1.23595 0.87610 1.02274 1.07505 1.23591 0.99867 0.90877 1.06401 1.75108 0.98157 1.25712 1.15228 1.78319 1.22109 0.89007 1.16666 1.21706 0.95761 0.86107 0.96560 0.91923 0.93243 0.91275 0.76487 0.81788 0.80141 0.81239 0.79538 0.79380 0.94236 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.86 13.01 55.49 0.72 -24.14 16 2 C -0.01 -0.37 5.10 -17.43 -0.09 -0.46 16 3 Si 1.06 23.37 30.00 -169.99 -5.10 18.27 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.08 7.11 56.52 0.40 -5.67 16 6 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.35 -8.56 10.00 -15.06 -0.15 -8.71 16 8 H 0.07 1.69 7.97 -52.49 -0.42 1.27 16 9 N -0.59 -12.30 3.26 -169.93 -0.55 -12.85 16 10 C 0.14 2.67 5.09 -2.41 -0.01 2.65 16 11 C 0.12 1.86 3.29 -65.67 -0.22 1.65 16 12 H 0.11 1.75 7.54 -51.93 -0.39 1.36 16 13 N -0.70 -9.87 4.63 -52.47 -0.24 -10.11 16 14 C 0.57 8.42 7.80 -12.20 -0.10 8.33 16 15 O -0.52 -9.19 16.13 5.35 0.09 -9.10 16 16 C -0.13 -1.58 5.92 -104.57 -0.62 -2.20 16 17 C -0.06 -0.60 9.77 -38.78 -0.38 -0.98 16 18 C 0.04 0.36 11.30 -17.42 -0.20 0.17 16 19 N -0.23 -2.82 11.48 30.53 0.35 -2.47 16 20 N -0.24 -3.09 11.49 30.78 0.35 -2.73 16 21 C 0.07 0.85 10.84 -16.96 -0.18 0.67 16 22 C 0.12 1.65 3.85 -66.09 -0.25 1.40 16 23 H 0.14 1.78 8.14 -51.93 -0.42 1.35 16 24 N -0.27 -3.65 3.14 -52.98 -0.17 -3.81 16 25 C -0.06 -0.67 8.48 -17.05 -0.14 -0.82 16 26 C -0.05 -0.58 12.05 -17.74 -0.21 -0.79 16 27 N -0.28 -4.19 12.41 30.23 0.38 -3.81 16 28 N -0.08 -1.27 13.16 60.35 0.79 -0.47 16 29 C 0.13 2.04 6.85 -3.06 -0.02 2.02 16 30 H 0.27 7.35 6.19 -40.82 -0.25 7.10 16 31 H 0.05 1.03 6.80 -51.93 -0.35 0.68 16 32 H 0.07 1.58 8.08 -51.92 -0.42 1.16 16 33 H 0.40 4.91 4.21 -40.82 -0.17 4.74 16 34 H 0.16 1.49 7.80 -52.49 -0.41 1.08 16 35 H 0.18 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.17 1.56 6.53 -52.49 -0.34 1.22 16 37 H 0.19 1.65 6.48 -52.49 -0.34 1.31 16 38 H 0.19 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.04 0.60 6.03 -51.93 -0.31 0.29 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 340.42 15.07 5.13 5.13 Total: -1.00 -32.39 340.42 -4.73 -37.11 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -3.90 Total: 6.07 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -2.58 Total: 2.93 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: 1.63 Total: -60.41 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.10 Total: 18.27 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.39 -4.73 -37.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070037121.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.105 kcal (2) G-P(sol) polarization free energy of solvation -32.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds