Wall clock time and date at job start Tue Mar 31 2020 06:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 119.99903 * 2 1 4 4 H 1.48491 * 109.47267 * 240.00499 * 3 2 1 5 5 H 1.48506 * 109.46768 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47030 * 120.00059 * 3 2 1 7 7 C 1.38813 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00226 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00077 * 359.97438 * 7 2 1 10 10 C 1.47020 * 125.64598 * 359.97438 * 9 7 2 11 11 C 1.54319 * 107.27203 * 178.97187 * 10 9 7 12 12 H 1.09003 * 110.72100 * 96.17091 * 11 10 9 13 13 N 1.46500 * 110.87514 * 219.36868 * 11 10 9 14 14 C 1.34767 * 120.00419 * 268.61013 * 13 11 10 15 15 O 1.21481 * 120.00062 * 0.02562 * 14 13 11 16 16 C 1.48456 * 120.00221 * 179.97438 * 14 13 11 17 17 C 1.39535 * 120.55284 * 180.02562 * 16 14 13 18 18 C 1.38755 * 118.26632 * 180.02562 * 17 16 14 19 19 N 1.32205 * 119.14634 * 0.02562 * 18 17 16 20 20 C 1.31875 * 121.03677 * 359.97438 * 19 18 17 21 21 N 1.31581 * 121.91748 * 359.71583 * 20 19 18 22 22 C 1.55158 * 102.94135 * 337.80802 * 11 10 9 23 23 H 1.09004 * 111.00262 * 153.61046 * 22 11 10 24 24 N 1.46498 * 111.00435 * 277.42572 * 22 11 10 25 25 C 1.35308 * 125.86965 * 81.81654 * 24 22 11 26 26 C 1.35347 * 106.17713 * 179.97438 * 25 24 22 27 27 N 1.33774 * 106.49812 * 0.02562 * 26 25 24 28 28 N 1.28637 * 108.88333 * 0.02562 * 27 26 25 29 29 C 1.47525 * 125.63864 * 180.02562 * 9 7 2 30 30 H 0.97003 * 120.00737 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.88510 * 59.55530 * 10 9 7 32 32 H 1.09003 * 110.01251 * 298.46331 * 10 9 7 33 33 H 0.97007 * 119.99590 * 88.61253 * 13 11 10 34 34 H 1.08007 * 120.86855 * 0.02687 * 17 16 14 35 35 H 1.08008 * 120.42769 * 180.02562 * 18 17 16 36 36 H 1.08000 * 119.04069 * 180.02562 * 20 19 18 37 37 H 1.07997 * 126.91159 * 359.97438 * 25 24 22 38 38 H 1.08002 * 126.75518 * 179.97438 * 26 25 24 39 39 H 1.08996 * 110.36624 * 85.27526 * 29 9 7 40 40 H 1.09001 * 110.41051 * 322.91966 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1037 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1374 -2.5328 0.0005 11 6 -0.4483 -4.0441 -0.0263 12 1 -0.6308 -4.4183 0.9811 13 7 -1.5922 -4.3264 -0.8970 14 6 -2.8387 -4.3512 -0.3853 15 8 -3.0139 -4.1392 0.7980 16 6 -3.9979 -4.6367 -1.2677 17 6 -5.2934 -4.6647 -0.7501 18 6 -6.3418 -4.9368 -1.6174 19 7 -6.0801 -5.1590 -2.8941 20 6 -4.8434 -5.1249 -3.3507 21 7 -3.8192 -4.8651 -2.5665 22 6 0.8516 -4.6560 -0.6121 23 1 0.9834 -5.6855 -0.2791 24 7 0.8572 -4.5753 -2.0749 25 6 1.2023 -3.4915 -2.8078 26 6 1.0655 -3.8542 -4.1046 27 7 0.6483 -5.1252 -4.1016 28 7 0.5338 -5.5230 -2.8837 29 6 1.9343 -3.7319 -0.0005 30 1 -0.4851 0.8400 0.0004 31 1 -0.5582 -2.0521 -0.8826 32 1 -0.5560 -2.0842 0.9015 33 1 -1.4524 -4.4954 -1.8420 34 1 -5.4754 -4.4795 0.2983 35 1 -7.3585 -4.9667 -1.2542 36 1 -4.6665 -5.3108 -4.3997 37 1 1.5226 -2.5305 -2.4334 38 1 1.2549 -3.2383 -4.9713 39 1 2.1674 -4.0427 1.0178 40 1 2.8335 -3.7420 -0.6165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070057502.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:34 Heat of formation + Delta-G solvation = 165.001518 kcal Electronic energy + Delta-G solvation = -28487.746121 eV Core-core repulsion = 24534.967327 eV Total energy + Delta-G solvation = -3952.778794 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.89907 -41.30273 -39.51611 -37.87293 -34.45851 -33.95053 -33.35487 -32.25825 -31.74263 -30.48919 -29.01363 -27.80412 -25.73097 -24.78933 -24.46189 -22.67530 -22.15899 -21.45121 -20.28246 -20.07442 -18.68311 -17.86486 -17.41762 -17.01198 -16.04542 -15.62978 -15.59552 -15.44988 -15.27203 -14.75971 -14.43828 -14.25232 -14.06036 -13.89128 -13.85189 -13.50176 -13.07325 -12.51733 -12.38083 -11.87727 -11.44090 -11.32024 -11.16256 -11.11055 -11.00303 -10.87320 -10.68998 -10.53014 -10.38844 -10.28052 -10.02273 -9.94755 -9.76481 -9.47415 -8.92090 -8.90415 -8.79252 -7.18933 -5.95198 -3.34630 0.34600 0.73070 2.04128 2.62795 2.74694 2.98830 3.02428 3.27853 3.33005 3.34947 3.70262 3.78748 3.91635 4.26320 4.38370 4.54448 4.68427 4.72519 4.82066 4.97831 5.09205 5.27914 5.32720 5.37860 5.42473 5.59895 5.69107 5.77527 5.82643 6.05030 6.05245 6.13749 6.18547 6.38412 6.58751 6.61008 7.08045 7.19407 7.27148 7.50479 7.56521 7.78079 7.92891 8.15536 8.91606 8.91855 9.52015 10.11110 11.14869 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.011910 B = 0.004425 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.469009 B = 6326.400992 C = 7397.735504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.004 3.996 3 Si 0.915 3.085 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.246 4.246 8 H 0.083 0.917 9 N -0.601 5.601 10 C 0.168 3.832 11 C 0.106 3.894 12 H 0.116 0.884 13 N -0.690 5.690 14 C 0.571 3.429 15 O -0.520 6.520 16 C 0.137 3.863 17 C -0.170 4.170 18 C 0.147 3.853 19 N -0.509 5.509 20 C 0.295 3.705 21 N -0.492 5.492 22 C 0.115 3.885 23 H 0.121 0.879 24 N -0.279 5.279 25 C -0.007 4.007 26 C -0.075 4.075 27 N -0.274 5.274 28 N -0.106 5.106 29 C 0.128 3.872 30 H 0.257 0.743 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.411 0.589 34 H 0.162 0.838 35 H 0.177 0.823 36 H 0.203 0.797 37 H 0.204 0.796 38 H 0.184 0.816 39 H 0.055 0.945 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.191 -9.251 -2.996 11.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.194 4.194 3 Si 0.745 3.255 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.373 4.373 8 H 0.101 0.899 9 N -0.329 5.329 10 C 0.042 3.958 11 C -0.001 4.001 12 H 0.133 0.867 13 N -0.341 5.341 14 C 0.354 3.646 15 O -0.395 6.395 16 C -0.011 4.011 17 C -0.193 4.193 18 C -0.020 4.020 19 N -0.224 5.224 20 C 0.007 3.993 21 N -0.208 5.208 22 C 0.011 3.989 23 H 0.138 0.862 24 N -0.073 5.073 25 C -0.158 4.158 26 C -0.232 4.232 27 N -0.141 5.141 28 N -0.085 5.085 29 C 0.000 4.000 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.248 0.752 34 H 0.179 0.821 35 H 0.194 0.806 36 H 0.219 0.781 37 H 0.221 0.779 38 H 0.201 0.799 39 H 0.073 0.927 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.637 -10.472 -3.193 12.803 hybrid contribution 0.667 2.212 0.611 2.390 sum -5.970 -8.260 -2.582 10.514 Atomic orbital electron populations 1.69917 1.04986 1.25843 1.55194 1.24842 0.95667 0.97917 1.01022 0.86166 0.78497 0.82792 0.78082 1.20865 1.21526 1.20958 1.18959 0.90468 0.81612 1.46291 0.89872 1.44478 1.00946 0.99616 1.87825 1.21639 0.84634 0.86486 1.02996 1.23000 0.82341 1.00340 0.94397 0.86652 1.45679 1.05347 1.69467 1.13610 1.17732 0.82473 0.77766 0.86668 1.90807 1.84805 1.48901 1.14995 1.21702 0.94160 0.94400 0.90833 1.23004 0.93014 0.99355 1.03906 1.23348 1.00089 0.90235 0.88302 1.68367 1.24235 1.13531 1.16221 1.25016 0.82756 0.90940 1.00577 1.68410 1.37008 1.11155 1.04230 1.23328 0.99271 1.02666 0.73685 0.86156 1.47250 1.42598 1.09074 1.08337 1.24210 1.04207 0.95998 0.91409 1.23537 1.08155 0.94261 0.97236 1.75006 1.16129 1.11496 1.11428 1.78241 1.20375 1.15067 0.94824 1.21967 0.93456 0.85979 0.98555 0.93227 0.92287 0.92089 0.75165 0.82063 0.80642 0.78095 0.77916 0.79913 0.92712 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.68 10.31 55.49 0.57 -24.11 16 2 C 0.00 0.09 5.49 -17.43 -0.10 -0.01 16 3 Si 0.92 20.32 29.55 -169.99 -5.02 15.29 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.25 -5.92 10.07 -15.06 -0.15 -6.07 16 8 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.60 -12.84 2.18 -169.99 -0.37 -13.21 16 10 C 0.17 3.64 4.66 -3.07 -0.01 3.63 16 11 C 0.11 1.85 3.18 -66.10 -0.21 1.64 16 12 H 0.12 1.95 7.55 -51.93 -0.39 1.56 16 13 N -0.69 -11.94 5.07 -52.78 -0.27 -12.21 16 14 C 0.57 9.90 7.83 -12.05 -0.09 9.80 16 15 O -0.52 -10.00 16.07 5.38 0.09 -9.91 16 16 C 0.14 2.05 6.79 -82.63 -0.56 1.49 16 17 C -0.17 -2.02 9.72 -38.91 -0.38 -2.40 16 18 C 0.15 1.46 11.31 -17.20 -0.19 1.27 16 19 N -0.51 -5.85 10.42 -14.60 -0.15 -6.01 16 20 C 0.30 3.55 12.27 -92.27 -1.13 2.41 16 21 N -0.49 -7.16 9.70 -11.14 -0.11 -7.26 16 22 C 0.11 1.78 4.05 -65.78 -0.27 1.51 16 23 H 0.12 1.56 8.14 -51.93 -0.42 1.14 16 24 N -0.28 -4.65 2.35 -52.68 -0.12 -4.78 16 25 C -0.01 -0.12 10.01 -17.05 -0.17 -0.29 16 26 C -0.08 -1.21 12.05 -17.74 -0.21 -1.43 16 27 N -0.27 -4.85 12.41 30.24 0.38 -4.47 16 28 N -0.11 -1.86 12.46 60.35 0.75 -1.11 16 29 C 0.13 2.14 6.27 -2.47 -0.02 2.13 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 31 H 0.06 1.46 7.27 -51.93 -0.38 1.08 16 32 H 0.06 1.55 7.51 -51.93 -0.39 1.16 16 33 H 0.41 7.28 6.33 -40.82 -0.26 7.02 16 34 H 0.16 1.70 7.74 -52.48 -0.41 1.29 16 35 H 0.18 1.03 8.06 -52.48 -0.42 0.61 16 36 H 0.20 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.20 3.82 6.79 -52.49 -0.36 3.47 16 38 H 0.18 2.37 8.06 -52.49 -0.42 1.95 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.99 7.95 -51.93 -0.41 0.58 16 LS Contribution 343.27 15.07 5.17 5.17 Total: -1.00 -30.20 343.27 -6.84 -37.03 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -4.25 Total: 11.89 kcal Atomic # 6 Polarization: 17.19 SS G_CDS: -3.50 Total: 13.69 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: 0.68 Total: -73.16 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.20 -6.84 -37.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070057502.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.035 kcal (2) G-P(sol) polarization free energy of solvation -30.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds