Wall clock time and date at job start Tue Mar 31 2020 06:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00368 * 2 1 4 4 H 1.48497 * 109.47177 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46751 * 299.99468 * 3 2 1 6 6 H 1.48501 * 109.47000 * 59.99237 * 3 2 1 7 7 C 1.38815 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00098 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99504 * 0.02562 * 7 2 1 10 10 C 1.47011 * 125.65346 * 0.02562 * 9 7 2 11 11 C 1.54317 * 107.27377 * 178.90468 * 10 9 7 12 12 H 1.09004 * 110.71985 * 96.34830 * 11 10 9 13 13 N 1.46505 * 110.72218 * 219.44192 * 11 10 9 14 14 C 1.34777 * 119.99981 * 273.54693 * 13 11 10 15 15 O 1.21471 * 120.00195 * 359.97438 * 14 13 11 16 16 C 1.48535 * 119.99685 * 179.97438 * 14 13 11 17 17 N 1.32464 * 119.18176 * 179.97438 * 16 14 13 18 18 C 1.32113 * 120.76205 * 180.02562 * 17 16 14 19 19 C 1.38801 * 119.16959 * 0.02562 * 18 17 16 20 20 C 1.38799 * 118.50558 * 0.25219 * 19 18 17 21 21 N 1.32118 * 119.16281 * 359.50895 * 20 19 18 22 22 C 1.55158 * 102.94294 * 337.80584 * 11 10 9 23 23 H 1.08996 * 111.00274 * 153.57854 * 22 11 10 24 24 N 1.46497 * 111.00392 * 277.43045 * 22 11 10 25 25 C 1.35305 * 125.87184 * 84.71357 * 24 22 11 26 26 C 1.35352 * 106.17885 * 179.90315 * 25 24 22 27 27 N 1.33776 * 106.49617 * 0.35466 * 26 25 24 28 28 N 1.28641 * 108.88270 * 359.77381 * 27 26 25 29 29 C 1.47427 * 125.64253 * 179.97438 * 9 7 2 30 30 H 0.96998 * 119.99684 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.88590 * 59.48324 * 10 9 7 32 32 H 1.09006 * 110.01191 * 298.39735 * 10 9 7 33 33 H 0.96996 * 120.00131 * 93.54417 * 13 11 10 34 34 H 1.08010 * 120.41453 * 179.97438 * 18 17 16 35 35 H 1.08002 * 120.74513 * 179.97438 * 19 18 17 36 36 H 1.07994 * 120.42158 * 179.72774 * 20 19 18 37 37 H 1.08004 * 126.91105 * 0.02562 * 25 24 22 38 38 H 1.08000 * 126.75358 * 180.12004 * 26 25 24 39 39 H 1.09000 * 110.37233 * 323.00347 * 29 9 7 40 40 H 1.08999 * 110.36758 * 85.32644 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4485 -4.0440 -0.0283 12 1 -0.6355 -4.4178 0.9785 13 7 -1.5904 -4.3223 -0.9029 14 6 -2.8454 -4.2476 -0.4170 15 8 -3.0296 -3.9498 0.7462 16 6 -4.0031 -4.5292 -1.3039 17 7 -5.2295 -4.4514 -0.8093 18 6 -6.2816 -4.6960 -1.5700 19 6 -6.0890 -5.0381 -2.9014 20 6 -4.7900 -5.1157 -3.3841 21 7 -3.7836 -4.8537 -2.5692 22 6 0.8522 -4.6558 -0.6124 23 1 0.9837 -5.6852 -0.2791 24 7 0.8599 -4.5746 -2.0751 25 6 1.2584 -3.5093 -2.8079 26 6 1.1031 -3.8644 -4.1048 27 7 0.6161 -5.1104 -4.1018 28 7 0.4834 -5.5026 -2.8839 29 6 1.9333 -3.7312 0.0005 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5570 -2.0517 -0.8841 32 1 -0.5574 -2.0843 0.8999 33 1 -1.4434 -4.5604 -1.8316 34 1 -7.2791 -4.6314 -1.1609 35 1 -6.9308 -5.2437 -3.5460 36 1 -4.6043 -5.3835 -4.4137 37 1 1.6280 -2.5662 -2.4335 38 1 1.3248 -3.2593 -4.9715 39 1 2.8333 -3.7404 -0.6144 40 1 2.1656 -4.0425 1.0190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070058781.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:38 Heat of formation + Delta-G solvation = 171.106200 kcal Electronic energy + Delta-G solvation = -28537.355113 eV Core-core repulsion = 24584.841039 eV Total energy + Delta-G solvation = -3952.514075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.88031 -41.29572 -39.36102 -37.73874 -34.45313 -33.87734 -33.31176 -32.39585 -31.68164 -30.46988 -28.94688 -27.73122 -25.60478 -24.79075 -24.56092 -22.65105 -22.14591 -21.40706 -20.24492 -19.97406 -18.60677 -17.82597 -17.34608 -16.99113 -16.32221 -15.68712 -15.52683 -15.47076 -15.08128 -14.70021 -14.41564 -14.15669 -13.90172 -13.78111 -13.71917 -13.46521 -13.02125 -12.49064 -12.32990 -11.80339 -11.40618 -11.36557 -11.29684 -11.10580 -11.09865 -10.84074 -10.64782 -10.48695 -10.20300 -10.01593 -9.93118 -9.92283 -9.70677 -9.47582 -8.89071 -8.85325 -8.72792 -7.14077 -5.90731 -3.30412 0.31552 0.87735 2.06269 2.62680 2.72968 2.91810 3.01380 3.29986 3.35721 3.38896 3.79476 3.81217 4.18570 4.31121 4.32476 4.54812 4.69109 4.75280 4.80330 5.00737 5.05685 5.11566 5.32596 5.44197 5.47312 5.63516 5.73035 5.80913 5.85201 6.02542 6.07707 6.17165 6.21650 6.48955 6.60268 6.70832 7.09895 7.26017 7.33367 7.51976 7.62814 7.84934 7.97922 8.31114 8.93074 8.96088 9.56453 10.15656 11.19239 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.011829 B = 0.004520 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.556295 B = 6193.168145 C = 7309.206097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.003 3.997 3 Si 0.914 3.086 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.245 4.245 8 H 0.084 0.916 9 N -0.601 5.601 10 C 0.168 3.832 11 C 0.109 3.891 12 H 0.114 0.886 13 N -0.694 5.694 14 C 0.584 3.416 15 O -0.498 6.498 16 C 0.290 3.710 17 N -0.468 5.468 18 C 0.143 3.857 19 C -0.213 4.213 20 C 0.147 3.853 21 N -0.490 5.490 22 C 0.115 3.885 23 H 0.121 0.879 24 N -0.278 5.278 25 C -0.005 4.005 26 C -0.076 4.076 27 N -0.274 5.274 28 N -0.107 5.107 29 C 0.129 3.871 30 H 0.256 0.744 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.410 0.590 34 H 0.176 0.824 35 H 0.154 0.846 36 H 0.176 0.824 37 H 0.203 0.797 38 H 0.184 0.816 39 H 0.061 0.939 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.109 -10.325 -6.551 14.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.195 4.195 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.373 4.373 8 H 0.102 0.898 9 N -0.329 5.329 10 C 0.042 3.958 11 C 0.003 3.997 12 H 0.132 0.868 13 N -0.348 5.348 14 C 0.365 3.635 15 O -0.369 6.369 16 C 0.020 3.980 17 N -0.183 5.183 18 C -0.023 4.023 19 C -0.235 4.235 20 C -0.019 4.019 21 N -0.206 5.206 22 C 0.011 3.989 23 H 0.139 0.861 24 N -0.072 5.072 25 C -0.157 4.157 26 C -0.233 4.233 27 N -0.141 5.141 28 N -0.086 5.086 29 C 0.001 3.999 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.248 0.752 34 H 0.193 0.807 35 H 0.171 0.829 36 H 0.193 0.807 37 H 0.220 0.780 38 H 0.201 0.799 39 H 0.079 0.921 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.050 -11.104 -5.164 14.131 hybrid contribution -0.034 1.809 -0.918 2.029 sum -7.084 -9.295 -6.082 13.174 Atomic orbital electron populations 1.69954 1.04965 1.25575 1.55220 1.24858 0.95656 0.97920 1.01092 0.86032 0.78733 0.83449 0.77398 1.20321 1.21587 1.21581 1.19042 0.90484 0.81601 1.46127 0.89776 1.44476 1.01016 0.99606 1.87799 1.21651 0.84513 0.86573 1.03063 1.22967 0.82249 1.00348 0.94165 0.86834 1.45639 1.04438 1.69245 1.15448 1.17159 0.81640 0.78573 0.86105 1.90822 1.84546 1.45507 1.16034 1.22957 0.92208 0.94065 0.88753 1.68269 0.98814 1.12165 1.39007 1.23400 0.98308 0.90389 0.90227 1.23179 1.00013 1.01952 0.98378 1.23339 0.87954 0.90749 0.99882 1.68388 1.37159 1.10891 1.04204 1.23328 0.99278 1.02669 0.73626 0.86108 1.47252 1.41107 1.10441 1.08363 1.24178 1.03929 0.96161 0.91391 1.23525 1.07639 0.94875 0.97218 1.74996 1.15942 1.11704 1.11451 1.78223 1.20093 1.15441 0.94828 1.21943 0.93408 0.86015 0.98558 0.93339 0.92328 0.91990 0.75178 0.80712 0.82867 0.80720 0.77981 0.79936 0.92127 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.25 10.31 55.49 0.57 -24.68 16 2 C 0.00 0.07 5.49 -17.43 -0.10 -0.02 16 3 Si 0.91 20.63 29.55 -169.99 -5.02 15.61 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.25 -5.99 10.06 -15.06 -0.15 -6.14 16 8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.60 -13.13 2.23 -170.08 -0.38 -13.51 16 10 C 0.17 3.77 4.74 -3.07 -0.01 3.76 16 11 C 0.11 1.99 3.11 -66.10 -0.21 1.79 16 12 H 0.11 2.01 7.69 -51.93 -0.40 1.61 16 13 N -0.69 -12.76 5.07 -52.75 -0.27 -13.03 16 14 C 0.58 11.40 7.85 -12.01 -0.09 11.31 16 15 O -0.50 -11.04 16.59 5.39 0.09 -10.95 16 16 C 0.29 4.97 7.60 -157.07 -1.19 3.78 16 17 N -0.47 -7.36 10.13 -11.12 -0.11 -7.48 16 18 C 0.14 1.50 11.30 -17.22 -0.19 1.30 16 19 C -0.21 -1.76 10.18 -39.17 -0.40 -2.16 16 20 C 0.15 1.55 11.30 -17.22 -0.19 1.35 16 21 N -0.49 -7.37 9.58 -11.12 -0.11 -7.48 16 22 C 0.12 1.82 4.06 -65.79 -0.27 1.56 16 23 H 0.12 1.59 8.14 -51.93 -0.42 1.16 16 24 N -0.28 -4.71 2.46 -52.69 -0.13 -4.84 16 25 C -0.01 -0.09 10.01 -17.05 -0.17 -0.26 16 26 C -0.08 -1.23 12.05 -17.73 -0.21 -1.44 16 27 N -0.27 -4.86 12.41 30.24 0.38 -4.49 16 28 N -0.11 -1.89 12.18 60.35 0.74 -1.15 16 29 C 0.13 2.18 6.21 -2.53 -0.02 2.17 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.06 1.51 7.27 -51.93 -0.38 1.13 16 32 H 0.06 1.64 7.51 -51.93 -0.39 1.25 16 33 H 0.41 7.53 6.01 -40.82 -0.25 7.29 16 34 H 0.18 1.13 8.06 -52.48 -0.42 0.71 16 35 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.20 3.81 6.81 -52.48 -0.36 3.45 16 38 H 0.18 2.36 8.06 -52.49 -0.42 1.94 16 39 H 0.06 0.99 7.87 -51.93 -0.41 0.59 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 343.60 15.07 5.18 5.18 Total: -1.00 -32.66 343.60 -6.54 -39.20 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -4.26 Total: 10.63 kcal Atomic # 6 Polarization: 20.20 SS G_CDS: -3.21 Total: 16.99 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: 0.69 Total: -76.65 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.66 -6.54 -39.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070058781.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.304 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds