Wall clock time and date at job start Tue Mar 31 2020 06:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00368 * 2 1 4 4 H 1.48497 * 109.47177 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46751 * 299.99468 * 3 2 1 6 6 H 1.48501 * 109.47000 * 59.99237 * 3 2 1 7 7 C 1.38815 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00098 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99504 * 0.02562 * 7 2 1 10 10 C 1.47011 * 125.65346 * 0.02562 * 9 7 2 11 11 C 1.54317 * 107.27377 * 178.90468 * 10 9 7 12 12 H 1.09004 * 110.71985 * 96.34830 * 11 10 9 13 13 N 1.46505 * 110.72218 * 219.44192 * 11 10 9 14 14 C 1.34777 * 119.99981 * 273.54693 * 13 11 10 15 15 O 1.21471 * 120.00195 * 359.97438 * 14 13 11 16 16 C 1.48535 * 119.99685 * 179.97438 * 14 13 11 17 17 N 1.32464 * 119.18176 * 179.97438 * 16 14 13 18 18 C 1.32113 * 120.76205 * 180.02562 * 17 16 14 19 19 C 1.38801 * 119.16959 * 0.02562 * 18 17 16 20 20 C 1.38799 * 118.50558 * 0.25219 * 19 18 17 21 21 N 1.32118 * 119.16281 * 359.50895 * 20 19 18 22 22 C 1.55158 * 102.94294 * 337.80584 * 11 10 9 23 23 H 1.08996 * 111.00274 * 153.57854 * 22 11 10 24 24 N 1.46497 * 111.00392 * 277.43045 * 22 11 10 25 25 C 1.35305 * 125.87184 * 84.71357 * 24 22 11 26 26 C 1.35352 * 106.17885 * 179.90315 * 25 24 22 27 27 N 1.33776 * 106.49617 * 0.35466 * 26 25 24 28 28 N 1.28641 * 108.88270 * 359.77381 * 27 26 25 29 29 C 1.47427 * 125.64253 * 179.97438 * 9 7 2 30 30 H 0.96998 * 119.99684 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.88590 * 59.48324 * 10 9 7 32 32 H 1.09006 * 110.01191 * 298.39735 * 10 9 7 33 33 H 0.96996 * 120.00131 * 93.54417 * 13 11 10 34 34 H 1.08010 * 120.41453 * 179.97438 * 18 17 16 35 35 H 1.08002 * 120.74513 * 179.97438 * 19 18 17 36 36 H 1.07994 * 120.42158 * 179.72774 * 20 19 18 37 37 H 1.08004 * 126.91105 * 0.02562 * 25 24 22 38 38 H 1.08000 * 126.75358 * 180.12004 * 26 25 24 39 39 H 1.09000 * 110.37233 * 323.00347 * 29 9 7 40 40 H 1.08999 * 110.36758 * 85.32644 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4485 -4.0440 -0.0283 12 1 -0.6355 -4.4178 0.9785 13 7 -1.5904 -4.3223 -0.9029 14 6 -2.8454 -4.2476 -0.4170 15 8 -3.0296 -3.9498 0.7462 16 6 -4.0031 -4.5292 -1.3039 17 7 -5.2295 -4.4514 -0.8093 18 6 -6.2816 -4.6960 -1.5700 19 6 -6.0890 -5.0381 -2.9014 20 6 -4.7900 -5.1157 -3.3841 21 7 -3.7836 -4.8537 -2.5692 22 6 0.8522 -4.6558 -0.6124 23 1 0.9837 -5.6852 -0.2791 24 7 0.8599 -4.5746 -2.0751 25 6 1.2584 -3.5093 -2.8079 26 6 1.1031 -3.8644 -4.1048 27 7 0.6161 -5.1104 -4.1018 28 7 0.4834 -5.5026 -2.8839 29 6 1.9333 -3.7312 0.0005 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5570 -2.0517 -0.8841 32 1 -0.5574 -2.0843 0.8999 33 1 -1.4434 -4.5604 -1.8316 34 1 -7.2791 -4.6314 -1.1609 35 1 -6.9308 -5.2437 -3.5460 36 1 -4.6043 -5.3835 -4.4137 37 1 1.6280 -2.5662 -2.4335 38 1 1.3248 -3.2593 -4.9715 39 1 2.8333 -3.7404 -0.6144 40 1 2.1656 -4.0425 1.0190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070058781.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:37 Heat of formation + Delta-G solvation = 146.878266 kcal Electronic energy + Delta-G solvation = -28538.405715 eV Core-core repulsion = 24584.841039 eV Total energy + Delta-G solvation = -3953.564677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.23963 -42.32169 -40.79567 -39.27814 -35.96038 -35.17886 -34.62491 -33.53302 -33.20995 -31.82619 -30.57644 -29.27532 -27.07726 -26.14802 -25.54569 -24.09057 -23.50890 -22.84472 -21.70439 -21.51282 -19.89628 -19.14135 -18.76119 -18.42352 -17.41726 -17.08552 -16.81648 -16.75548 -16.44780 -15.98359 -15.88258 -15.68625 -15.28959 -15.11009 -14.95435 -14.61957 -14.50878 -14.02323 -13.89452 -13.37686 -13.11225 -12.88022 -12.71904 -12.54994 -12.37445 -12.26887 -12.12532 -12.03434 -11.87832 -11.80924 -11.37646 -11.11416 -10.81327 -10.76882 -10.44432 -10.29835 -10.23155 -9.01729 -7.87184 -5.26749 -0.68201 0.04167 0.67839 1.28740 1.44304 1.48510 1.50257 1.59398 1.62282 1.69064 2.46623 2.72535 2.74701 3.10625 3.20857 3.34443 3.39485 3.54000 3.60945 3.76098 3.81224 3.90010 4.05483 4.17507 4.20721 4.34674 4.44997 4.46490 4.69345 4.71763 4.81393 4.84689 4.97343 5.24170 5.32057 5.39875 5.45934 5.66991 5.73727 5.85383 6.07320 6.10067 6.72939 6.92195 7.00915 7.56969 7.68314 8.27848 9.22036 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.011829 B = 0.004520 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.556295 B = 6193.168145 C = 7309.206097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.057 4.057 3 Si 0.974 3.026 4 H -0.258 1.258 5 H -0.297 1.297 6 H -0.302 1.302 7 C -0.234 4.234 8 H 0.099 0.901 9 N -0.614 5.614 10 C 0.190 3.810 11 C 0.116 3.884 12 H 0.119 0.881 13 N -0.688 5.688 14 C 0.577 3.423 15 O -0.541 6.541 16 C 0.256 3.744 17 N -0.504 5.504 18 C 0.130 3.870 19 C -0.172 4.172 20 C 0.131 3.869 21 N -0.512 5.512 22 C 0.127 3.873 23 H 0.161 0.839 24 N -0.276 5.276 25 C -0.019 4.019 26 C -0.065 4.065 27 N -0.287 5.287 28 N -0.110 5.110 29 C 0.129 3.871 30 H 0.244 0.756 31 H 0.019 0.981 32 H 0.010 0.990 33 H 0.412 0.588 34 H 0.214 0.786 35 H 0.209 0.791 36 H 0.212 0.788 37 H 0.187 0.813 38 H 0.213 0.787 39 H 0.076 0.924 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.238 -12.261 -8.560 16.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.251 4.251 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.224 1.224 6 H -0.230 1.230 7 C -0.362 4.362 8 H 0.117 0.883 9 N -0.341 5.341 10 C 0.064 3.936 11 C 0.009 3.991 12 H 0.137 0.863 13 N -0.341 5.341 14 C 0.360 3.640 15 O -0.415 6.415 16 C -0.014 4.014 17 N -0.220 5.220 18 C -0.035 4.035 19 C -0.193 4.193 20 C -0.034 4.034 21 N -0.230 5.230 22 C 0.024 3.976 23 H 0.178 0.822 24 N -0.070 5.070 25 C -0.171 4.171 26 C -0.222 4.222 27 N -0.153 5.153 28 N -0.089 5.089 29 C 0.002 3.998 30 H 0.053 0.947 31 H 0.037 0.963 32 H 0.028 0.972 33 H 0.250 0.750 34 H 0.231 0.769 35 H 0.226 0.774 36 H 0.228 0.772 37 H 0.204 0.796 38 H 0.230 0.770 39 H 0.094 0.906 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.139 -13.094 -7.206 16.563 hybrid contribution -0.109 2.339 -0.403 2.376 sum -7.248 -10.754 -7.609 15.036 Atomic orbital electron populations 1.70202 1.06588 1.25135 1.57929 1.25597 0.96171 1.01034 1.02303 0.85078 0.78665 0.79799 0.76164 1.18152 1.22387 1.22974 1.19465 0.91228 0.82423 1.43089 0.88317 1.44601 1.00916 1.01121 1.87473 1.21098 0.84837 0.89018 0.98659 1.22754 0.83722 0.97520 0.95127 0.86290 1.45585 1.04370 1.68813 1.15351 1.17737 0.82637 0.77424 0.86177 1.90770 1.85317 1.47528 1.17910 1.22277 0.91788 0.97875 0.89466 1.68172 0.99463 1.13335 1.41078 1.24201 0.98408 0.89673 0.91244 1.23746 1.00662 0.97238 0.97668 1.24118 0.88219 0.90210 1.00815 1.68299 1.39394 1.11553 1.03732 1.23399 0.96769 1.04285 0.73164 0.82167 1.47313 1.40853 1.10249 1.08581 1.24062 1.05048 0.95873 0.92080 1.23994 1.06009 0.94439 0.97723 1.74994 1.16494 1.12386 1.11471 1.78198 1.20113 1.15570 0.95037 1.22173 0.93824 0.83513 1.00243 0.94707 0.96326 0.97162 0.75019 0.76908 0.77368 0.77161 0.79569 0.77017 0.90614 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.79 10.31 21.65 0.22 -55.57 16 2 C -0.06 -3.05 5.49 84.86 0.47 -2.58 16 3 Si 0.97 43.42 29.55 68.60 2.03 45.45 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 5 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 7 C -0.23 -11.49 10.06 84.03 0.85 -10.65 16 8 H 0.10 4.49 7.83 -2.91 -0.02 4.47 16 9 N -0.61 -27.17 2.23 -692.02 -1.54 -28.71 16 10 C 0.19 9.07 4.74 86.73 0.41 9.48 16 11 C 0.12 4.34 3.11 46.18 0.14 4.48 16 12 H 0.12 4.35 7.69 -2.38 -0.02 4.33 16 13 N -0.69 -26.32 5.07 -439.11 -2.22 -28.55 16 14 C 0.58 23.88 7.85 86.99 0.68 24.56 16 15 O -0.54 -25.77 16.59 -3.63 -0.06 -25.83 16 16 C 0.26 9.01 7.60 137.68 1.05 10.05 16 17 N -0.50 -16.03 10.13 -189.08 -1.92 -17.94 16 18 C 0.13 2.41 11.30 84.79 0.96 3.37 16 19 C -0.17 -2.13 10.18 22.54 0.23 -1.90 16 20 C 0.13 2.40 11.30 84.78 0.96 3.36 16 21 N -0.51 -15.21 9.58 -189.09 -1.81 -17.03 16 22 C 0.13 3.86 4.06 46.38 0.19 4.05 16 23 H 0.16 3.71 8.14 -2.39 -0.02 3.69 16 24 N -0.28 -9.04 2.46 -320.61 -0.79 -9.82 16 25 C -0.02 -0.65 10.01 83.49 0.84 0.19 16 26 C -0.07 -2.01 12.05 83.73 1.01 -1.00 16 27 N -0.29 -9.71 12.41 -58.25 -0.72 -10.43 16 28 N -0.11 -3.74 12.18 37.02 0.45 -3.29 16 29 C 0.13 4.16 6.21 86.85 0.54 4.70 16 30 H 0.24 14.28 8.31 -92.71 -0.77 13.51 16 31 H 0.02 1.03 7.27 -2.39 -0.02 1.01 16 32 H 0.01 0.58 7.51 -2.38 -0.02 0.57 16 33 H 0.41 15.42 6.01 -92.71 -0.56 14.87 16 34 H 0.21 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.21 0.27 8.06 -2.91 -0.02 0.25 16 36 H 0.21 2.12 8.06 -2.91 -0.02 2.10 16 37 H 0.19 7.06 6.81 -2.91 -0.02 7.04 16 38 H 0.21 5.01 8.06 -2.91 -0.02 4.98 16 39 H 0.08 2.29 7.87 -2.39 -0.02 2.27 16 40 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -78.49 343.60 2.50 -75.99 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.54 Total: 27.60 kcal Atomic # 6 Polarization: 39.80 SS G_CDS: 8.31 Total: 48.11 kcal Atomic # 7 Polarization: -163.00 SS G_CDS: -8.33 Total: -171.34 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.06 Total: -25.83 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -78.49 2.50 -75.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070058781.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.872 kcal (2) G-P(sol) polarization free energy of solvation -78.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds