Wall clock time and date at job start Tue Mar 31 2020 06:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48493 * 109.47208 * 239.99986 * 3 2 1 5 5 H 1.48504 * 109.47195 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47478 * 119.99394 * 3 2 1 7 7 C 1.38810 * 119.99961 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00161 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00091 * 0.02562 * 7 2 1 10 10 C 1.47472 * 125.62659 * 359.91514 * 9 7 2 11 11 C 1.54910 * 104.80780 * 204.14066 * 10 9 7 12 12 H 1.08997 * 111.00946 * 81.13766 * 11 10 9 13 13 N 1.46500 * 111.00404 * 204.95017 * 11 10 9 14 14 C 1.34774 * 119.99923 * 270.42384 * 13 11 10 15 15 O 1.21507 * 120.00060 * 359.97438 * 14 13 11 16 16 C 1.48163 * 119.99585 * 179.97438 * 14 13 11 17 17 C 1.39718 * 120.17790 * 179.97438 * 16 14 13 18 18 C 1.38822 * 117.89721 * 179.77068 * 17 16 14 19 19 C 1.38570 * 118.06916 * 0.48934 * 18 17 16 20 20 N 1.32179 * 120.06680 * 359.49605 * 19 18 17 21 21 N 1.28349 * 122.29983 * 0.26635 * 20 19 18 22 22 C 1.55155 * 101.61645 * 323.04393 * 11 10 9 23 23 H 1.09000 * 110.72037 * 153.85309 * 22 11 10 24 24 N 1.46498 * 110.72147 * 276.93979 * 22 11 10 25 25 C 1.35317 * 125.86539 * 84.99962 * 24 22 11 26 26 C 1.35356 * 106.17428 * 180.02562 * 25 24 22 27 27 N 1.33768 * 106.49846 * 0.02562 * 26 25 24 28 28 N 1.28636 * 108.88410 * 359.73451 * 27 26 25 29 29 C 1.47021 * 125.64913 * 179.97438 * 9 7 2 30 30 H 0.96997 * 119.99677 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.34533 * 85.32541 * 10 9 7 32 32 H 1.08994 * 110.40336 * 322.98515 * 10 9 7 33 33 H 0.97007 * 119.99827 * 90.41547 * 13 11 10 34 34 H 1.08006 * 121.05366 * 359.97438 * 17 16 14 35 35 H 1.07996 * 120.96855 * 180.24156 * 18 17 16 36 36 H 1.08002 * 119.97104 * 179.78477 * 19 18 17 37 37 H 1.08004 * 126.91458 * 359.97438 * 25 24 22 38 38 H 1.08001 * 126.74793 * 179.97438 * 26 25 24 39 39 H 1.09001 * 109.88514 * 59.48966 * 29 9 7 40 40 H 1.09003 * 110.01337 * 298.39305 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1420 -2.5327 0.0018 11 6 -0.4015 -3.9319 0.6138 12 1 -0.3520 -3.8977 1.7021 13 7 -1.6883 -4.4704 0.1662 14 6 -2.8081 -4.2131 0.8706 15 8 -2.7504 -3.5349 1.8772 16 6 -4.1096 -4.7573 0.4176 17 6 -5.2728 -4.4934 1.1452 18 6 -6.4670 -5.0227 0.6753 19 6 -6.4314 -5.7881 -0.4793 20 7 -5.2850 -5.9882 -1.1061 21 7 -4.1769 -5.4989 -0.6819 22 6 0.7784 -4.7524 0.0290 23 1 1.0241 -5.5919 0.6794 24 7 0.4640 -5.2213 -1.3228 25 6 0.6373 -4.5186 -2.4661 26 6 0.2203 -5.3242 -3.4707 27 7 -0.1829 -6.4650 -2.9004 28 7 -0.0208 -6.3741 -1.6276 29 6 1.9318 -3.7275 0.0005 30 1 -0.4849 0.8400 -0.0004 31 1 -0.5283 -2.4864 -1.0165 32 1 -0.5996 -1.7585 0.6176 33 1 -1.7343 -5.0121 -0.6372 34 1 -5.2443 -3.8938 2.0431 35 1 -7.3962 -4.8466 1.1967 36 1 -7.3420 -6.2177 -0.8702 37 1 1.0287 -3.5162 -2.5584 38 1 0.2136 -5.0912 -4.5253 39 1 2.5588 -3.8507 0.8836 40 1 2.5293 -3.8665 -0.9005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070061518.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:12 Heat of formation + Delta-G solvation = 175.411574 kcal Electronic energy + Delta-G solvation = -28351.576509 eV Core-core repulsion = 24399.249129 eV Total energy + Delta-G solvation = -3952.327380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.99048 -41.27519 -39.46703 -37.84450 -34.36787 -33.68028 -33.26573 -32.75513 -31.72709 -30.60150 -28.92278 -27.73429 -25.64660 -24.87007 -24.61875 -22.66606 -22.30536 -21.40675 -20.17646 -20.16180 -18.60046 -17.80502 -17.26242 -17.05301 -16.85093 -15.82230 -15.52683 -15.46109 -15.01033 -14.61304 -14.56444 -14.18161 -14.02881 -13.90928 -13.47434 -13.32932 -12.96558 -12.71909 -12.44019 -11.92394 -11.67476 -11.41066 -11.38710 -11.02752 -10.83071 -10.67263 -10.53470 -10.51112 -10.25822 -10.23140 -10.10303 -9.99741 -9.92368 -9.78716 -9.00876 -8.86036 -8.78381 -7.15242 -5.85526 -3.32248 0.29364 0.54435 1.94936 2.57101 2.65362 2.91924 3.04198 3.30640 3.35283 3.37146 3.55809 3.74588 4.20895 4.28664 4.38699 4.45624 4.58048 4.69472 4.75992 4.89536 4.94332 5.06876 5.30614 5.39692 5.46056 5.52374 5.62626 5.62893 5.74495 5.77124 5.86436 6.10091 6.12490 6.17866 6.44947 6.49898 6.97086 7.11073 7.36679 7.52619 7.63330 8.08034 8.17827 8.39449 8.84651 8.95814 9.56808 10.14230 11.17669 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.011452 B = 0.004471 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.330320 B = 6261.629238 C = 7877.665183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.919 3.081 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.237 4.237 8 H 0.083 0.917 9 N -0.597 5.597 10 C 0.145 3.855 11 C 0.107 3.893 12 H 0.118 0.882 13 N -0.693 5.693 14 C 0.576 3.424 15 O -0.519 6.519 16 C 0.030 3.970 17 C -0.065 4.065 18 C -0.124 4.124 19 C 0.050 3.950 20 N -0.239 5.239 21 N -0.206 5.206 22 C 0.118 3.882 23 H 0.121 0.879 24 N -0.280 5.280 25 C -0.019 4.019 26 C -0.067 4.067 27 N -0.271 5.271 28 N -0.099 5.099 29 C 0.130 3.870 30 H 0.257 0.743 31 H 0.023 0.977 32 H 0.123 0.877 33 H 0.409 0.591 34 H 0.164 0.836 35 H 0.158 0.842 36 H 0.177 0.823 37 H 0.193 0.807 38 H 0.186 0.814 39 H 0.056 0.944 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.784 -9.451 0.486 12.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.198 4.198 3 Si 0.749 3.251 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.364 4.364 8 H 0.101 0.899 9 N -0.325 5.325 10 C 0.019 3.981 11 C 0.000 4.000 12 H 0.136 0.864 13 N -0.345 5.345 14 C 0.358 3.642 15 O -0.393 6.393 16 C -0.117 4.117 17 C -0.094 4.094 18 C -0.153 4.153 19 C -0.112 4.112 20 N -0.082 5.082 21 N -0.053 5.053 22 C 0.015 3.985 23 H 0.139 0.861 24 N -0.074 5.074 25 C -0.171 4.171 26 C -0.223 4.223 27 N -0.137 5.137 28 N -0.078 5.078 29 C 0.003 3.997 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.141 0.859 33 H 0.247 0.753 34 H 0.182 0.818 35 H 0.175 0.825 36 H 0.194 0.806 37 H 0.210 0.790 38 H 0.203 0.797 39 H 0.074 0.926 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.435 -10.768 0.504 13.688 hybrid contribution -0.057 2.353 0.366 2.382 sum -8.492 -8.415 0.869 11.987 Atomic orbital electron populations 1.69735 1.04983 1.25532 1.55935 1.24833 0.95708 0.97990 1.01266 0.86094 0.78407 0.82584 0.78016 1.21008 1.21483 1.20916 1.18976 0.90527 0.81643 1.45294 0.89930 1.44387 1.01202 0.99384 1.87523 1.22426 0.84956 0.91495 0.99191 1.23184 0.79386 0.96378 1.01078 0.86390 1.45663 1.06666 1.52799 1.29380 1.17480 0.82645 0.80418 0.83633 1.90832 1.85566 1.37955 1.24928 1.22942 0.96054 0.97943 0.94742 1.22475 0.91305 0.95763 0.99906 1.22450 0.99595 0.96368 0.96847 1.24539 0.99102 0.94759 0.92835 1.73197 0.95070 1.14992 1.24895 1.73316 1.18964 1.03911 1.09134 1.23178 0.98345 0.98750 0.78245 0.86090 1.47438 1.40805 1.10673 1.08462 1.23865 1.06354 1.01822 0.85029 1.23533 1.06015 0.91765 1.01035 1.75050 1.17703 1.22021 0.98923 1.78268 1.16640 1.02731 1.10184 1.21657 0.92037 0.85243 1.00804 0.93222 0.95925 0.85930 0.75328 0.81820 0.82453 0.80558 0.78970 0.79724 0.92599 0.93902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.12 10.09 55.49 0.56 -24.56 16 2 C 0.00 -0.03 5.49 -17.43 -0.10 -0.12 16 3 Si 0.92 20.70 29.55 -169.99 -5.02 15.68 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.24 -5.91 10.27 -15.06 -0.15 -6.06 16 8 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 9 N -0.60 -13.29 3.40 -170.04 -0.58 -13.87 16 10 C 0.15 3.23 5.18 -2.50 -0.01 3.22 16 11 C 0.11 1.95 3.24 -65.78 -0.21 1.73 16 12 H 0.12 2.17 7.63 -51.93 -0.40 1.78 16 13 N -0.69 -12.36 5.16 -52.57 -0.27 -12.63 16 14 C 0.58 10.27 7.82 -12.19 -0.10 10.17 16 15 O -0.52 -10.30 16.08 5.36 0.09 -10.21 16 16 C 0.03 0.45 6.83 -82.83 -0.57 -0.11 16 17 C -0.07 -0.75 9.73 -38.81 -0.38 -1.13 16 18 C -0.12 -1.02 10.20 -39.24 -0.40 -1.43 16 19 C 0.05 0.47 11.31 -17.28 -0.20 0.28 16 20 N -0.24 -3.35 11.51 30.59 0.35 -2.99 16 21 N -0.21 -3.32 10.75 33.32 0.36 -2.96 16 22 C 0.12 1.89 3.96 -66.10 -0.26 1.63 16 23 H 0.12 1.65 8.14 -51.93 -0.42 1.23 16 24 N -0.28 -4.66 2.39 -52.98 -0.13 -4.78 16 25 C -0.02 -0.32 9.38 -17.04 -0.16 -0.48 16 26 C -0.07 -1.03 12.05 -17.74 -0.21 -1.25 16 27 N -0.27 -4.80 12.41 30.24 0.38 -4.43 16 28 N -0.10 -1.76 12.24 60.35 0.74 -1.02 16 29 C 0.13 2.27 6.28 -3.07 -0.02 2.25 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.02 0.55 7.60 -51.93 -0.39 0.15 16 32 H 0.12 3.25 5.88 -51.93 -0.31 2.94 16 33 H 0.41 7.41 6.10 -40.82 -0.25 7.16 16 34 H 0.16 1.69 7.72 -52.48 -0.41 1.28 16 35 H 0.16 0.65 8.06 -52.49 -0.42 0.23 16 36 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.19 3.22 7.71 -52.48 -0.40 2.82 16 38 H 0.19 2.23 8.06 -52.49 -0.42 1.81 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.04 0.74 7.18 -51.93 -0.37 0.37 16 LS Contribution 343.06 15.07 5.17 5.17 Total: -1.00 -31.72 343.06 -5.31 -37.03 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -4.19 Total: 10.88 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: -2.77 Total: 8.70 kcal Atomic # 7 Polarization: -68.66 SS G_CDS: 1.41 Total: -67.25 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.72 -5.31 -37.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070061518.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.445 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds