Wall clock time and date at job start Tue Mar 31 2020 06:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48493 * 109.47208 * 239.99986 * 3 2 1 5 5 H 1.48504 * 109.47195 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47478 * 119.99394 * 3 2 1 7 7 C 1.38810 * 119.99961 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00161 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00091 * 0.02562 * 7 2 1 10 10 C 1.47472 * 125.62659 * 359.91514 * 9 7 2 11 11 C 1.54910 * 104.80780 * 204.14066 * 10 9 7 12 12 H 1.08997 * 111.00946 * 81.13766 * 11 10 9 13 13 N 1.46500 * 111.00404 * 204.95017 * 11 10 9 14 14 C 1.34774 * 119.99923 * 270.42384 * 13 11 10 15 15 O 1.21507 * 120.00060 * 359.97438 * 14 13 11 16 16 C 1.48163 * 119.99585 * 179.97438 * 14 13 11 17 17 C 1.39718 * 120.17790 * 179.97438 * 16 14 13 18 18 C 1.38822 * 117.89721 * 179.77068 * 17 16 14 19 19 C 1.38570 * 118.06916 * 0.48934 * 18 17 16 20 20 N 1.32179 * 120.06680 * 359.49605 * 19 18 17 21 21 N 1.28349 * 122.29983 * 0.26635 * 20 19 18 22 22 C 1.55155 * 101.61645 * 323.04393 * 11 10 9 23 23 H 1.09000 * 110.72037 * 153.85309 * 22 11 10 24 24 N 1.46498 * 110.72147 * 276.93979 * 22 11 10 25 25 C 1.35317 * 125.86539 * 84.99962 * 24 22 11 26 26 C 1.35356 * 106.17428 * 180.02562 * 25 24 22 27 27 N 1.33768 * 106.49846 * 0.02562 * 26 25 24 28 28 N 1.28636 * 108.88410 * 359.73451 * 27 26 25 29 29 C 1.47021 * 125.64913 * 179.97438 * 9 7 2 30 30 H 0.96997 * 119.99677 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.34533 * 85.32541 * 10 9 7 32 32 H 1.08994 * 110.40336 * 322.98515 * 10 9 7 33 33 H 0.97007 * 119.99827 * 90.41547 * 13 11 10 34 34 H 1.08006 * 121.05366 * 359.97438 * 17 16 14 35 35 H 1.07996 * 120.96855 * 180.24156 * 18 17 16 36 36 H 1.08002 * 119.97104 * 179.78477 * 19 18 17 37 37 H 1.08004 * 126.91458 * 359.97438 * 25 24 22 38 38 H 1.08001 * 126.74793 * 179.97438 * 26 25 24 39 39 H 1.09001 * 109.88514 * 59.48966 * 29 9 7 40 40 H 1.09003 * 110.01337 * 298.39305 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1420 -2.5327 0.0018 11 6 -0.4015 -3.9319 0.6138 12 1 -0.3520 -3.8977 1.7021 13 7 -1.6883 -4.4704 0.1662 14 6 -2.8081 -4.2131 0.8706 15 8 -2.7504 -3.5349 1.8772 16 6 -4.1096 -4.7573 0.4176 17 6 -5.2728 -4.4934 1.1452 18 6 -6.4670 -5.0227 0.6753 19 6 -6.4314 -5.7881 -0.4793 20 7 -5.2850 -5.9882 -1.1061 21 7 -4.1769 -5.4989 -0.6819 22 6 0.7784 -4.7524 0.0290 23 1 1.0241 -5.5919 0.6794 24 7 0.4640 -5.2213 -1.3228 25 6 0.6373 -4.5186 -2.4661 26 6 0.2203 -5.3242 -3.4707 27 7 -0.1829 -6.4650 -2.9004 28 7 -0.0208 -6.3741 -1.6276 29 6 1.9318 -3.7275 0.0005 30 1 -0.4849 0.8400 -0.0004 31 1 -0.5283 -2.4864 -1.0165 32 1 -0.5996 -1.7585 0.6176 33 1 -1.7343 -5.0121 -0.6372 34 1 -5.2443 -3.8938 2.0431 35 1 -7.3962 -4.8466 1.1967 36 1 -7.3420 -6.2177 -0.8702 37 1 1.0287 -3.5162 -2.5584 38 1 0.2136 -5.0912 -4.5253 39 1 2.5588 -3.8507 0.8836 40 1 2.5293 -3.8665 -0.9005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070061518.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:11 Heat of formation + Delta-G solvation = 151.563538 kcal Electronic energy + Delta-G solvation = -28352.610637 eV Core-core repulsion = 24399.249129 eV Total energy + Delta-G solvation = -3953.361508 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.32234 -42.27952 -40.84148 -39.34993 -35.95465 -35.07077 -34.22370 -33.81546 -33.40065 -31.92750 -30.53679 -29.27100 -27.06657 -26.21453 -25.61009 -24.08312 -23.65742 -22.80329 -21.74407 -21.55865 -19.86813 -19.20934 -18.69201 -18.28307 -17.76141 -17.14295 -16.97649 -16.75566 -16.53831 -16.00947 -15.76208 -15.65590 -15.41814 -15.04612 -14.81569 -14.50261 -14.42494 -14.16069 -13.97162 -13.42563 -13.20373 -12.77358 -12.75838 -12.67080 -12.40343 -12.32808 -12.12325 -11.91673 -11.81899 -11.40022 -11.37260 -11.26726 -11.17797 -10.89552 -10.77229 -10.31967 -10.29130 -9.01193 -7.80794 -5.28274 -0.66659 -0.30371 0.60437 1.24507 1.45196 1.50563 1.52124 1.58370 1.62585 1.75187 2.46959 2.52286 2.67370 3.14091 3.29649 3.33679 3.38705 3.49073 3.57984 3.69872 3.72462 3.86569 3.88548 4.08962 4.13450 4.21668 4.29795 4.36592 4.69203 4.71009 4.76815 4.78220 4.81090 4.99090 5.12310 5.26299 5.33657 5.47646 5.63257 5.68873 6.10771 6.19951 6.78167 7.00964 7.43762 7.51237 7.68101 8.26684 9.20417 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.011452 B = 0.004471 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.330320 B = 6261.629238 C = 7877.665183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.059 4.059 3 Si 0.979 3.021 4 H -0.276 1.276 5 H -0.302 1.302 6 H -0.276 1.276 7 C -0.236 4.236 8 H 0.095 0.905 9 N -0.613 5.613 10 C 0.161 3.839 11 C 0.116 3.884 12 H 0.117 0.883 13 N -0.693 5.693 14 C 0.572 3.428 15 O -0.549 6.549 16 C 0.004 3.996 17 C -0.076 4.076 18 C -0.093 4.093 19 C 0.060 3.940 20 N -0.274 5.274 21 N -0.241 5.241 22 C 0.130 3.870 23 H 0.155 0.845 24 N -0.278 5.278 25 C -0.029 4.029 26 C -0.056 4.056 27 N -0.290 5.290 28 N -0.109 5.109 29 C 0.131 3.869 30 H 0.246 0.754 31 H -0.004 1.004 32 H 0.078 0.922 33 H 0.409 0.591 34 H 0.172 0.828 35 H 0.212 0.788 36 H 0.225 0.775 37 H 0.187 0.813 38 H 0.218 0.782 39 H 0.080 0.920 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.660 -10.819 0.475 14.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.252 4.252 3 Si 0.808 3.192 4 H -0.202 1.202 5 H -0.228 1.228 6 H -0.202 1.202 7 C -0.364 4.364 8 H 0.113 0.887 9 N -0.340 5.340 10 C 0.035 3.965 11 C 0.009 3.991 12 H 0.134 0.866 13 N -0.344 5.344 14 C 0.356 3.644 15 O -0.425 6.425 16 C -0.142 4.142 17 C -0.105 4.105 18 C -0.122 4.122 19 C -0.102 4.102 20 N -0.116 5.116 21 N -0.087 5.087 22 C 0.027 3.973 23 H 0.172 0.828 24 N -0.072 5.072 25 C -0.180 4.180 26 C -0.213 4.213 27 N -0.156 5.156 28 N -0.088 5.088 29 C 0.005 3.995 30 H 0.055 0.945 31 H 0.013 0.987 32 H 0.096 0.904 33 H 0.246 0.754 34 H 0.189 0.811 35 H 0.229 0.771 36 H 0.241 0.759 37 H 0.204 0.796 38 H 0.234 0.766 39 H 0.098 0.902 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.278 -12.189 0.478 15.326 hybrid contribution 0.086 2.718 0.336 2.740 sum -9.192 -9.471 0.813 13.223 Atomic orbital electron populations 1.70024 1.06403 1.25166 1.58021 1.25596 0.96331 1.01046 1.02218 0.85142 0.77014 0.78768 0.78316 1.20155 1.22826 1.20181 1.19394 0.91267 0.82620 1.43152 0.88727 1.44517 1.01340 1.00717 1.87420 1.21930 0.85015 0.92699 0.96872 1.22862 0.80795 0.94721 1.00738 0.86569 1.45654 1.06682 1.52652 1.29422 1.17988 0.83615 0.79689 0.83092 1.90796 1.86228 1.39310 1.26178 1.22688 0.95712 0.99718 0.96129 1.22724 0.91417 0.96307 1.00071 1.23032 1.00057 0.93357 0.95710 1.25344 0.99020 0.93420 0.92422 1.73090 0.96055 1.16155 1.26322 1.73218 1.20697 1.05044 1.09779 1.23163 0.96349 0.99230 0.78557 0.82769 1.47464 1.40634 1.10537 1.08597 1.23909 1.06992 1.01747 0.85384 1.24054 1.04268 0.90621 1.02369 1.75040 1.18413 1.23050 0.99088 1.78245 1.17037 1.03041 1.10432 1.21816 0.92535 0.83077 1.02111 0.94454 0.98651 0.90397 0.75365 0.81057 0.77131 0.75863 0.79578 0.76557 0.90241 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.46 10.09 21.65 0.22 -54.24 16 2 C -0.06 -3.11 5.49 84.86 0.47 -2.65 16 3 Si 0.98 43.24 29.55 68.60 2.03 45.27 16 4 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.24 -11.82 10.27 84.03 0.86 -10.96 16 8 H 0.10 4.41 7.83 -2.91 -0.02 4.39 16 9 N -0.61 -27.56 3.40 -691.87 -2.35 -29.90 16 10 C 0.16 7.52 5.18 86.85 0.45 7.97 16 11 C 0.12 4.35 3.24 46.38 0.15 4.50 16 12 H 0.12 4.41 7.63 -2.39 -0.02 4.39 16 13 N -0.69 -25.64 5.16 -438.54 -2.26 -27.90 16 14 C 0.57 21.32 7.82 86.88 0.68 22.00 16 15 O -0.55 -22.88 16.08 -3.74 -0.06 -22.94 16 16 C 0.00 0.13 6.83 42.00 0.29 0.42 16 17 C -0.08 -1.68 9.73 22.77 0.22 -1.45 16 18 C -0.09 -1.19 10.20 22.49 0.23 -0.96 16 19 C 0.06 0.93 11.31 84.72 0.96 1.89 16 20 N -0.27 -7.38 11.51 -57.15 -0.66 -8.03 16 21 N -0.24 -7.84 10.75 -48.48 -0.52 -8.36 16 22 C 0.13 4.05 3.96 46.18 0.18 4.23 16 23 H 0.15 3.85 8.14 -2.39 -0.02 3.83 16 24 N -0.28 -9.09 2.39 -321.54 -0.77 -9.86 16 25 C -0.03 -0.93 9.38 83.49 0.78 -0.15 16 26 C -0.06 -1.69 12.05 83.73 1.01 -0.68 16 27 N -0.29 -10.06 12.41 -58.25 -0.72 -10.78 16 28 N -0.11 -3.78 12.24 37.02 0.45 -3.33 16 29 C 0.13 4.41 6.28 86.73 0.54 4.95 16 30 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 31 H 0.00 -0.23 7.60 -2.39 -0.02 -0.24 16 32 H 0.08 4.40 5.88 -2.39 -0.01 4.38 16 33 H 0.41 15.26 6.10 -92.70 -0.57 14.70 16 34 H 0.17 3.40 7.72 -2.91 -0.02 3.37 16 35 H 0.21 0.44 8.06 -2.91 -0.02 0.41 16 36 H 0.22 1.16 8.06 -2.91 -0.02 1.14 16 37 H 0.19 6.29 7.71 -2.91 -0.02 6.26 16 38 H 0.22 4.80 8.06 -2.91 -0.02 4.78 16 39 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.05 1.75 7.18 -2.39 -0.02 1.73 16 Total: -1.00 -73.99 343.06 2.72 -71.27 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 0.54 Total: 29.70 kcal Atomic # 6 Polarization: 22.28 SS G_CDS: 6.82 Total: 29.10 kcal Atomic # 7 Polarization: -145.80 SS G_CDS: -6.61 Total: -152.41 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.06 Total: -22.94 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -73.99 2.72 -71.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070061518.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.837 kcal (2) G-P(sol) polarization free energy of solvation -73.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds