Wall clock time and date at job start Tue Mar 31 2020 06:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 119.99980 * 2 1 4 4 H 1.48495 * 109.47431 * 240.00102 * 3 2 1 5 5 H 1.48501 * 109.47158 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46962 * 119.99993 * 3 2 1 7 7 C 1.38816 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99693 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99836 * 359.97438 * 7 2 1 10 10 C 1.46495 * 119.99717 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.78470 * 36.78987 * 10 9 7 12 12 C 1.54325 * 110.72250 * 273.54393 * 10 9 7 13 13 N 1.47018 * 107.40412 * 219.52320 * 12 10 9 14 14 C 1.34777 * 125.64981 * 178.82520 * 13 12 10 15 15 O 1.21520 * 120.00128 * 180.02562 * 14 13 12 16 16 C 1.48149 * 120.00023 * 0.02908 * 14 13 12 17 17 C 1.39437 * 120.09764 * 179.72149 * 16 14 13 18 18 N 1.32089 * 119.87003 * 179.78101 * 17 16 14 19 19 C 1.32142 * 120.07189 * 0.49372 * 18 17 16 20 20 C 1.38729 * 120.19373 * 359.73477 * 19 18 17 21 21 N 1.31799 * 120.12893 * 0.02562 * 20 19 18 22 22 C 1.47426 * 108.70517 * 358.86539 * 13 12 10 23 23 C 1.54914 * 104.82992 * 24.12623 * 22 13 12 24 24 H 1.09000 * 111.00165 * 204.88167 * 23 22 13 25 25 N 1.46495 * 111.00127 * 81.07022 * 23 22 13 26 26 C 1.35317 * 125.87020 * 326.16152 * 25 23 22 27 27 C 1.35352 * 106.17318 * 179.91022 * 26 25 23 28 28 N 1.33768 * 106.49690 * 0.35343 * 27 26 25 29 29 N 1.28625 * 108.88790 * 359.77381 * 28 27 26 30 30 H 0.97005 * 120.00291 * 359.97438 * 1 2 3 31 31 H 0.96997 * 119.99849 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.88192 * 100.02760 * 12 10 9 33 33 H 1.09000 * 109.88128 * 339.01612 * 12 10 9 34 34 H 1.07997 * 120.06455 * 359.97438 * 17 16 14 35 35 H 1.08000 * 119.90207 * 179.71484 * 19 18 17 36 36 H 1.07999 * 119.93680 * 179.97438 * 20 19 18 37 37 H 1.08999 * 110.36956 * 142.96999 * 22 13 12 38 38 H 1.09001 * 110.36709 * 265.18192 * 22 13 12 39 39 H 1.07996 * 126.90950 * 0.02562 * 26 25 23 40 40 H 1.08003 * 126.74355 * 180.12581 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9583 -3.5836 0.6098 12 6 2.4084 -4.0850 -1.4412 13 7 2.2222 -5.5409 -1.5247 14 6 2.4053 -6.2943 -2.6272 15 8 2.2208 -7.4945 -2.5805 16 6 2.8315 -5.6592 -3.8959 17 6 3.0271 -6.4375 -5.0362 18 7 3.4030 -5.8660 -6.1662 19 6 3.6028 -4.5606 -6.2136 20 6 3.4136 -3.7843 -5.0796 21 7 3.0340 -4.3457 -3.9492 22 6 1.8011 -6.0403 -0.2031 23 6 1.1522 -4.8185 0.4941 24 1 1.1989 -4.9173 1.5786 25 7 -0.2297 -4.6308 0.0457 26 6 -0.7033 -4.8923 -1.1947 27 6 -2.0200 -4.5799 -1.1691 28 7 -2.2823 -4.1408 0.0669 29 7 -1.2010 -4.1833 0.7621 30 1 -0.4851 0.8401 0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 3.4451 -3.8306 -1.6618 33 1 1.7458 -3.5854 -2.1479 34 1 2.8686 -7.5050 -4.9964 35 1 3.9145 -4.0969 -7.1378 36 1 3.5784 -2.7178 -5.1229 37 1 1.0732 -6.8438 -0.3154 38 1 2.6646 -6.3882 0.3638 39 1 -0.1436 -5.2752 -2.0352 40 1 -2.7201 -4.6646 -1.9871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070128892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:58 Heat of formation + Delta-G solvation = 165.394159 kcal Electronic energy + Delta-G solvation = -28633.110325 eV Core-core repulsion = 24680.348557 eV Total energy + Delta-G solvation = -3952.761767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.86332 -41.48060 -39.79952 -37.85090 -34.83020 -34.23736 -33.45045 -31.98009 -31.31306 -30.52714 -29.54611 -27.72121 -25.97105 -24.83253 -24.07926 -23.52454 -22.18810 -21.73616 -20.27340 -20.11950 -18.17998 -17.72592 -17.53482 -17.18322 -16.81968 -16.04489 -15.95172 -15.59225 -14.87586 -14.83355 -14.64325 -14.61900 -13.94180 -13.73825 -13.45880 -13.31391 -13.17155 -12.83624 -12.68070 -12.23930 -12.08693 -11.57316 -11.42458 -11.19904 -11.17565 -11.00980 -10.90269 -10.56220 -10.44168 -10.26214 -9.94795 -9.74414 -9.60084 -9.38145 -9.07537 -8.89172 -8.70272 -7.24393 -5.90703 -3.26477 0.12492 0.78969 2.06493 2.50044 2.62914 2.69258 3.09636 3.33610 3.38286 3.40956 3.53506 3.68911 3.90184 4.10902 4.17656 4.42782 4.46562 4.65125 4.86430 4.88687 4.90616 4.93552 5.21797 5.25086 5.30461 5.42098 5.46714 5.50338 5.67498 5.67856 5.89214 5.96141 6.13888 6.16638 6.27078 6.54098 6.58037 6.85201 7.03087 7.25521 7.39976 7.52964 7.86789 8.21909 9.01834 9.34796 9.82841 10.17257 11.29199 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.009753 B = 0.005240 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.148273 B = 5341.810943 C = 7101.692924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.000 4.000 3 Si 0.910 3.090 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.262 4.262 8 H 0.074 0.926 9 N -0.706 5.706 10 C 0.162 3.838 11 H 0.089 0.911 12 C 0.082 3.918 13 N -0.596 5.596 14 C 0.587 3.413 15 O -0.536 6.536 16 C 0.031 3.969 17 C 0.107 3.893 18 N -0.443 5.443 19 C 0.071 3.929 20 C 0.052 3.948 21 N -0.395 5.395 22 C 0.103 3.897 23 C 0.112 3.888 24 H 0.136 0.864 25 N -0.268 5.268 26 C -0.040 4.040 27 C -0.057 4.057 28 N -0.270 5.270 29 N -0.068 5.068 30 H 0.260 0.740 31 H 0.392 0.608 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.181 0.819 35 H 0.176 0.824 36 H 0.179 0.821 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.173 0.827 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.379 -11.845 -8.754 16.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.198 4.198 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.393 4.393 8 H 0.092 0.908 9 N -0.347 5.347 10 C 0.048 3.952 11 H 0.107 0.893 12 C -0.043 4.043 13 N -0.329 5.329 14 C 0.373 3.627 15 O -0.413 6.413 16 C -0.110 4.110 17 C -0.053 4.053 18 N -0.157 5.157 19 C -0.090 4.090 20 C -0.110 4.110 21 N -0.112 5.112 22 C -0.021 4.021 23 C 0.007 3.993 24 H 0.153 0.847 25 N -0.062 5.062 26 C -0.191 4.191 27 C -0.214 4.214 28 N -0.136 5.136 29 N -0.048 5.048 30 H 0.070 0.930 31 H 0.229 0.771 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.198 0.802 35 H 0.193 0.807 36 H 0.196 0.804 37 H 0.109 0.891 38 H 0.120 0.880 39 H 0.190 0.810 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 6.923 -11.827 -7.338 15.545 hybrid contribution 0.705 0.814 -1.359 1.734 sum 7.629 -11.013 -8.697 15.972 Atomic orbital electron populations 1.69687 1.05178 1.26320 1.55063 1.24830 0.95456 0.97929 1.01577 0.86255 0.78554 0.83269 0.77912 1.21095 1.21566 1.21000 1.19104 0.90982 0.83483 1.45698 0.90770 1.42354 1.06232 0.98849 1.87281 1.21740 0.94202 0.86088 0.93212 0.89309 1.23629 1.02981 0.76449 1.01261 1.48470 1.65157 1.10499 1.08775 1.17329 0.78168 0.85444 0.81767 1.90807 1.52647 1.13439 1.84380 1.22082 1.01601 0.91332 0.95952 1.23791 0.92018 1.02188 0.87302 1.68632 1.09137 1.11752 1.26141 1.24134 0.94276 0.90427 1.00190 1.24026 0.95635 1.02596 0.88706 1.68794 1.05532 1.09860 1.27020 1.22570 1.00310 0.95541 0.83644 1.23367 0.76561 0.97842 1.01483 0.84662 1.47111 1.09737 1.40894 1.08418 1.23369 0.96224 1.08851 0.90687 1.23438 0.94973 1.05673 0.97354 1.75074 1.17982 1.16831 1.03753 1.78353 0.90598 1.15446 1.20372 0.93019 0.77127 0.90497 0.89415 0.80200 0.80725 0.80359 0.89072 0.88048 0.80994 0.80105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.20 13.06 55.49 0.72 -26.47 16 2 C 0.00 0.01 5.50 -17.43 -0.10 -0.09 16 3 Si 0.91 21.30 29.55 -169.99 -5.02 16.27 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.26 -6.72 9.98 -15.06 -0.15 -6.87 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.71 -16.31 5.13 -51.52 -0.26 -16.57 16 10 C 0.16 2.74 3.47 -65.96 -0.23 2.51 16 11 H 0.09 1.39 8.12 -51.93 -0.42 0.97 16 12 C 0.08 1.26 4.56 -3.07 -0.01 1.24 16 13 N -0.60 -7.94 2.08 -171.51 -0.36 -8.30 16 14 C 0.59 8.08 7.63 -12.19 -0.09 7.99 16 15 O -0.54 -8.18 16.60 5.35 0.09 -8.10 16 16 C 0.03 0.40 6.72 -82.84 -0.56 -0.16 16 17 C 0.11 1.20 10.77 -16.99 -0.18 1.02 16 18 N -0.44 -4.74 10.49 -12.71 -0.13 -4.88 16 19 C 0.07 0.60 11.23 -17.24 -0.19 0.41 16 20 C 0.05 0.51 11.22 -17.38 -0.20 0.32 16 21 N -0.39 -5.00 7.04 -9.61 -0.07 -5.07 16 22 C 0.10 1.22 5.98 -2.53 -0.02 1.20 16 23 C 0.11 1.61 4.07 -65.65 -0.27 1.35 16 24 H 0.14 1.73 8.14 -51.93 -0.42 1.30 16 25 N -0.27 -4.66 2.28 -52.55 -0.12 -4.78 16 26 C -0.04 -0.67 10.01 -17.04 -0.17 -0.84 16 27 C -0.06 -0.99 12.05 -17.74 -0.21 -1.21 16 28 N -0.27 -5.57 12.41 30.24 0.38 -5.20 16 29 N -0.07 -1.40 12.57 60.35 0.76 -0.64 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.39 10.13 6.20 -40.82 -0.25 9.88 16 32 H 0.08 1.17 7.55 -51.93 -0.39 0.77 16 33 H 0.09 1.58 7.30 -51.93 -0.38 1.20 16 34 H 0.18 1.80 7.65 -52.49 -0.40 1.40 16 35 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.09 1.09 7.92 -51.93 -0.41 0.68 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.17 2.59 6.76 -52.49 -0.35 2.24 16 40 H 0.18 2.47 8.06 -52.48 -0.42 2.05 16 LS Contribution 343.81 15.07 5.18 5.18 Total: -1.00 -34.06 343.81 -5.49 -39.55 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -4.27 Total: 12.12 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -2.38 Total: 6.87 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: 0.92 Total: -71.90 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.09 Total: -8.10 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.06 -5.49 -39.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070128892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.943 kcal (2) G-P(sol) polarization free energy of solvation -34.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds