Wall clock time and date at job start Tue Mar 31 2020 06:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00171 * 2 1 4 4 H 1.48502 * 109.47260 * 180.27265 * 3 2 1 5 5 H 1.48498 * 109.46871 * 300.27557 * 3 2 1 6 6 H 1.48503 * 109.46856 * 60.27063 * 3 2 1 7 7 C 1.38816 * 120.00231 * 180.27291 * 2 1 3 8 8 H 1.07995 * 120.00277 * 179.73145 * 7 2 1 9 9 N 1.36943 * 119.99368 * 359.72354 * 7 2 1 10 10 C 1.46508 * 119.99385 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.88870 * 31.12145 * 10 9 7 12 12 C 1.54910 * 111.00187 * 267.19493 * 10 9 7 13 13 N 1.47429 * 104.82856 * 204.91736 * 12 10 9 14 14 C 1.34781 * 125.64610 * 204.15000 * 13 12 10 15 15 O 1.21552 * 119.99774 * 355.14095 * 14 13 12 16 16 C 1.47823 * 119.99912 * 175.13853 * 14 13 12 17 17 C 1.39957 * 120.93974 * 7.29848 * 16 14 13 18 18 N 1.32149 * 118.92209 * 179.71605 * 17 16 14 19 19 C 1.31865 * 120.96682 * 0.57095 * 18 17 16 20 20 N 1.31871 * 122.09712 * 359.69781 * 19 18 17 21 21 C 1.32140 * 120.96579 * 0.02562 * 20 19 18 22 22 C 1.47018 * 108.70507 * 24.13357 * 13 12 10 23 23 C 1.54330 * 107.27059 * 358.93603 * 22 13 12 24 24 H 1.08998 * 110.72065 * 219.44199 * 23 22 13 25 25 N 1.46503 * 110.86740 * 96.24149 * 23 22 13 26 26 C 1.35310 * 125.87232 * 331.10303 * 25 23 22 27 27 C 1.35352 * 106.17712 * 179.90431 * 26 25 23 28 28 N 1.33772 * 106.49772 * 0.35751 * 27 26 25 29 29 N 1.28638 * 108.88298 * 359.76678 * 28 27 26 30 30 H 0.96995 * 119.99642 * 359.72549 * 1 2 3 31 31 H 0.96997 * 120.00510 * 0.02562 * 9 7 2 32 32 H 1.08994 * 110.37262 * 323.75967 * 12 10 9 33 33 H 1.09006 * 110.36252 * 86.08699 * 12 10 9 34 34 H 1.07998 * 120.53559 * 359.97339 * 17 16 14 35 35 H 1.08002 * 118.95200 * 179.72851 * 19 18 17 36 36 H 1.08004 * 120.53848 * 180.02562 * 21 20 19 37 37 H 1.08999 * 109.88003 * 239.52261 * 22 13 12 38 38 H 1.08995 * 109.88063 * 118.35092 * 22 13 12 39 39 H 1.07999 * 126.91241 * 0.02562 * 26 25 23 40 40 H 1.08000 * 126.75305 * 180.11997 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0067 5 1 1.8865 2.3993 -1.2091 6 1 1.8965 2.3935 1.2158 7 6 2.0103 -1.2021 -0.0057 8 1 3.0903 -1.2021 -0.0101 9 7 1.3255 -2.3881 -0.0057 10 6 2.0581 -3.6568 -0.0123 11 1 3.0098 -3.5588 0.5100 12 6 2.2679 -4.1693 -1.4590 13 7 2.4248 -5.6289 -1.3232 14 6 3.0630 -6.4347 -2.1950 15 8 3.4931 -5.9822 -3.2379 16 6 3.2398 -7.8687 -1.8827 17 6 2.6243 -8.4428 -0.7645 18 7 2.8049 -9.7301 -0.5261 19 6 3.5600 -10.4672 -1.3169 20 7 4.1624 -9.9658 -2.3774 21 6 4.0322 -8.6894 -2.6934 22 6 1.7703 -6.0598 -0.0793 23 6 1.2021 -4.7964 0.6009 24 1 1.3406 -4.8444 1.6809 25 7 -0.2136 -4.6171 0.2692 26 6 -0.8195 -5.0276 -0.8689 27 6 -2.1180 -4.6624 -0.7577 28 7 -2.2398 -4.0474 0.4240 29 7 -1.0937 -4.0371 1.0080 30 1 -0.4849 0.8400 0.0040 31 1 0.3556 -2.3881 -0.0020 32 1 1.3983 -3.9368 -2.0737 33 1 3.1671 -3.7296 -1.8905 34 1 2.0085 -7.8445 -0.1095 35 1 3.6888 -11.5150 -1.0890 36 1 4.5284 -8.2861 -3.5638 37 1 2.4983 -6.5380 0.5761 38 1 0.9613 -6.7537 -0.3073 39 1 -0.3598 -5.5445 -1.6983 40 1 -2.9010 -4.8307 -1.4823 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070181796.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:24 Heat of formation + Delta-G solvation = 178.754234 kcal Electronic energy + Delta-G solvation = -28209.231315 eV Core-core repulsion = 24257.048884 eV Total energy + Delta-G solvation = -3952.182431 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.01021 -41.66676 -39.97570 -38.00615 -34.88976 -34.09295 -33.61735 -32.77427 -31.31232 -30.68568 -29.61975 -28.23050 -26.03017 -24.94681 -24.15242 -23.72396 -22.34052 -21.82626 -20.41141 -20.26371 -18.42778 -18.16232 -17.85928 -17.48408 -16.93554 -16.04759 -15.83858 -15.62086 -15.03968 -14.86862 -14.68272 -14.35665 -14.07268 -14.05164 -13.77423 -13.66941 -13.37503 -13.02830 -12.87453 -12.30491 -11.95362 -11.73438 -11.36348 -11.30137 -11.27165 -11.03503 -10.96115 -10.57254 -10.24899 -10.21853 -10.15429 -10.00254 -9.75682 -9.69541 -9.21701 -9.00881 -8.91160 -7.31329 -5.95834 -3.32390 0.01421 0.57360 1.93077 2.41941 2.52183 2.60862 2.99467 3.33126 3.38294 3.38541 3.41580 3.56175 3.67184 3.89434 3.95824 4.05431 4.33198 4.41701 4.52160 4.55807 4.81726 4.85893 4.91910 4.96682 5.18803 5.24610 5.34758 5.44630 5.54709 5.57422 5.73720 5.80343 5.96203 6.02941 6.09763 6.31489 6.39162 6.46828 6.88723 7.12999 7.50167 7.53019 7.78563 8.16343 8.91434 9.29841 9.75557 10.09650 11.23738 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.014773 B = 0.003772 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.937458 B = 7421.402973 C = 8698.571025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.002 3.998 3 Si 0.911 3.089 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.269 4.269 8 H 0.077 0.923 9 N -0.702 5.702 10 C 0.167 3.833 11 H 0.095 0.905 12 C 0.075 3.925 13 N -0.608 5.608 14 C 0.583 3.417 15 O -0.522 6.522 16 C -0.236 4.236 17 C 0.147 3.853 18 N -0.519 5.519 19 C 0.310 3.690 20 N -0.522 5.522 21 C 0.209 3.791 22 C 0.080 3.920 23 C 0.113 3.887 24 H 0.137 0.863 25 N -0.272 5.272 26 C -0.056 4.056 27 C -0.052 4.052 28 N -0.269 5.269 29 N -0.059 5.059 30 H 0.260 0.740 31 H 0.393 0.607 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.196 0.804 35 H 0.201 0.799 36 H 0.182 0.818 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.178 0.822 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.831 -19.913 -1.404 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.196 4.196 3 Si 0.741 3.259 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.399 4.399 8 H 0.095 0.905 9 N -0.342 5.342 10 C 0.051 3.949 11 H 0.113 0.887 12 C -0.050 4.050 13 N -0.342 5.342 14 C 0.370 3.630 15 O -0.399 6.399 16 C -0.244 4.244 17 C -0.019 4.019 18 N -0.233 5.233 19 C 0.023 3.977 20 N -0.235 5.235 21 C 0.041 3.959 22 C -0.044 4.044 23 C 0.009 3.991 24 H 0.155 0.845 25 N -0.066 5.066 26 C -0.206 4.206 27 C -0.209 4.209 28 N -0.135 5.135 29 N -0.038 5.038 30 H 0.070 0.930 31 H 0.230 0.770 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.212 0.788 35 H 0.218 0.782 36 H 0.199 0.801 37 H 0.122 0.878 38 H 0.108 0.892 39 H 0.195 0.805 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 5.031 -19.751 -0.448 20.386 hybrid contribution 0.308 1.156 -1.410 1.849 sum 5.338 -18.594 -1.858 19.435 Atomic orbital electron populations 1.69707 1.05196 1.26276 1.54672 1.24863 0.95518 0.98089 1.01169 0.86084 0.78817 0.83576 0.77387 1.20297 1.21575 1.21498 1.19224 0.91135 0.83396 1.46148 0.90538 1.42358 1.06363 0.98827 1.86630 1.21707 0.95101 0.85983 0.92121 0.88713 1.23754 1.03237 0.75939 1.02075 1.48394 1.54186 1.09973 1.21634 1.17393 0.78295 0.84241 0.83099 1.90835 1.49626 1.75684 1.23742 1.21817 1.05121 0.96802 1.00628 1.25005 0.92498 0.91503 0.92920 1.68585 1.17181 1.06475 1.31031 1.25325 0.86240 1.00903 0.85233 1.68594 1.22695 1.13789 1.18400 1.23539 0.88803 0.87661 0.95851 1.22864 0.97875 0.96197 0.87475 1.23206 0.75957 0.97166 1.02812 0.84548 1.47222 1.09663 1.36824 1.12934 1.23398 0.94653 1.08632 0.93955 1.23481 0.96216 1.03311 0.97854 1.75136 1.14729 1.16549 1.07112 1.78433 0.92804 1.13470 1.19108 0.93004 0.76984 0.90721 0.89438 0.78841 0.78206 0.80095 0.87774 0.89232 0.80523 0.79925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.98 13.06 55.49 0.72 -26.25 16 2 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 3 Si 0.91 21.51 29.55 -169.99 -5.02 16.49 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.27 -6.92 9.96 -15.06 -0.15 -7.07 16 8 H 0.08 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.70 -15.97 5.21 -51.34 -0.27 -16.23 16 10 C 0.17 2.69 3.58 -65.78 -0.24 2.46 16 11 H 0.10 1.44 8.09 -51.93 -0.42 1.02 16 12 C 0.07 1.13 6.17 -2.53 -0.02 1.12 16 13 N -0.61 -7.00 3.33 -171.91 -0.57 -7.57 16 14 C 0.58 7.17 7.82 -12.34 -0.10 7.08 16 15 O -0.52 -8.27 16.77 5.32 0.09 -8.18 16 16 C -0.24 -2.35 5.90 -104.69 -0.62 -2.96 16 17 C 0.15 1.25 9.87 -16.77 -0.17 1.08 16 18 N -0.52 -4.65 10.42 -14.24 -0.15 -4.80 16 19 C 0.31 2.50 12.27 -92.03 -1.13 1.37 16 20 N -0.52 -4.94 10.42 -14.25 -0.15 -5.09 16 21 C 0.21 2.03 10.88 -16.78 -0.18 1.84 16 22 C 0.08 0.70 3.93 -3.06 -0.01 0.69 16 23 C 0.11 1.42 3.96 -66.09 -0.26 1.16 16 24 H 0.14 1.49 8.14 -51.93 -0.42 1.07 16 25 N -0.27 -4.19 2.38 -52.98 -0.13 -4.31 16 26 C -0.06 -0.78 9.36 -17.05 -0.16 -0.94 16 27 C -0.05 -0.79 12.05 -17.74 -0.21 -1.00 16 28 N -0.27 -5.18 12.41 30.24 0.38 -4.81 16 29 N -0.06 -1.13 12.29 60.35 0.74 -0.39 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.39 9.88 5.99 -40.82 -0.24 9.63 16 32 H 0.07 1.28 7.58 -51.93 -0.39 0.89 16 33 H 0.09 1.45 8.09 -51.93 -0.42 1.03 16 34 H 0.20 1.27 2.96 -52.85 -0.16 1.12 16 35 H 0.20 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.18 1.60 7.76 -52.48 -0.41 1.19 16 37 H 0.10 0.61 6.67 -51.93 -0.35 0.27 16 38 H 0.09 0.66 5.87 -51.93 -0.30 0.35 16 39 H 0.18 1.99 7.72 -52.49 -0.41 1.59 16 40 H 0.18 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 339.54 15.07 5.12 5.12 Total: -1.00 -34.71 339.54 -6.49 -41.19 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -3.91 Total: 10.04 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -3.34 Total: 4.79 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: 0.58 Total: -69.45 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.09 Total: -8.18 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.71 -6.49 -41.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070181796.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.948 kcal (2) G-P(sol) polarization free energy of solvation -34.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 185.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds