Wall clock time and date at job start Tue Mar 31 2020 06:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00024 * 2 1 4 4 H 1.48505 * 109.46851 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47182 * 300.00058 * 3 2 1 6 6 H 1.48497 * 109.46718 * 59.99812 * 3 2 1 7 7 C 1.38810 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99935 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00426 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00148 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.64325 * 31.85700 * 10 9 7 12 12 C 1.54326 * 110.72034 * 268.51800 * 10 9 7 13 13 N 1.47019 * 107.27310 * 219.44823 * 12 10 9 14 14 C 1.34778 * 125.64822 * 178.98091 * 13 12 10 15 15 O 1.21479 * 119.99891 * 179.97438 * 14 13 12 16 16 C 1.48453 * 119.99969 * 359.96836 * 14 13 12 17 17 C 1.39540 * 120.55095 * 180.02562 * 16 14 13 18 18 C 1.38754 * 118.26339 * 180.02562 * 17 16 14 19 19 N 1.32206 * 119.14889 * 0.02562 * 18 17 16 20 20 C 1.31877 * 121.03587 * 0.02562 * 19 18 17 21 21 N 1.31584 * 121.91699 * 359.71551 * 20 19 18 22 22 C 1.47524 * 108.71737 * 358.93892 * 13 12 10 23 23 C 1.54912 * 104.78241 * 24.12154 * 22 13 12 24 24 H 1.09000 * 111.00950 * 204.90544 * 23 22 13 25 25 N 1.46498 * 111.00346 * 81.08481 * 23 22 13 26 26 C 1.35311 * 125.87099 * 329.91282 * 25 23 22 27 27 C 1.35349 * 106.18014 * 180.11451 * 26 25 23 28 28 N 1.33776 * 106.49589 * 359.58896 * 27 26 25 29 29 N 1.28634 * 108.88224 * 0.26432 * 28 27 26 30 30 H 0.96996 * 119.99997 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99527 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.87975 * 338.86491 * 12 10 9 33 33 H 1.08998 * 109.87943 * 99.86688 * 12 10 9 34 34 H 1.08001 * 120.86466 * 359.97438 * 17 16 14 35 35 H 1.08007 * 120.42682 * 179.97438 * 18 17 16 36 36 H 1.08007 * 119.03925 * 179.97438 * 20 19 18 37 37 H 1.08997 * 110.37283 * 265.31689 * 22 13 12 38 38 H 1.08994 * 110.41350 * 142.95251 * 22 13 12 39 39 H 1.08005 * 126.91425 * 359.97275 * 26 25 23 40 40 H 1.08002 * 126.75754 * 179.85677 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0000 -3.5566 0.5375 12 6 2.2998 -4.1477 -1.4446 13 7 2.1113 -5.6057 -1.4471 14 6 2.2150 -6.4093 -2.5241 15 8 2.0380 -7.6056 -2.4086 16 6 2.5452 -5.8326 -3.8515 17 6 2.6549 -6.6538 -4.9743 18 6 2.9661 -6.0647 -6.1914 19 7 3.1473 -4.7562 -6.2458 20 6 3.0370 -4.0090 -5.1648 21 7 2.7388 -4.5234 -3.9910 22 6 1.7907 -6.0439 -0.0754 23 6 1.1930 -4.7901 0.6106 24 1 1.3206 -4.8382 1.6920 25 7 -0.2189 -4.6216 0.2582 26 6 -0.7974 -5.0051 -0.9034 27 6 -2.1023 -4.6588 -0.8072 28 7 -2.2582 -4.0961 0.3964 29 7 -1.1238 -4.0891 1.0028 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3880 -0.0023 32 1 1.5834 -3.6801 -2.1201 33 1 3.3157 -3.9023 -1.7542 34 1 2.5024 -7.7203 -4.8977 35 1 3.0600 -6.6674 -7.0827 36 1 3.1921 -2.9432 -5.2461 37 1 2.6952 -6.3642 0.4418 38 1 1.0582 -6.8508 -0.0954 39 1 -0.3146 -5.4882 -1.7401 40 1 -2.8681 -4.8111 -1.5534 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070302425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:22 Heat of formation + Delta-G solvation = 166.399574 kcal Electronic energy + Delta-G solvation = -28603.555286 eV Core-core repulsion = 24650.837117 eV Total energy + Delta-G solvation = -3952.718169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.86435 -41.42432 -39.83366 -37.89740 -34.52177 -34.09925 -33.35932 -32.32715 -31.33135 -30.53953 -29.62507 -27.73562 -26.08599 -24.63624 -24.07077 -23.53083 -22.19025 -21.76353 -20.37784 -20.14387 -18.22490 -17.82941 -17.57344 -17.15010 -16.19492 -15.96735 -15.73299 -15.59061 -15.08925 -14.84289 -14.65901 -14.62256 -13.92983 -13.88911 -13.74656 -13.39349 -13.27215 -12.81273 -12.75249 -12.23325 -11.71351 -11.27060 -11.18783 -11.13600 -11.03564 -10.98949 -10.91256 -10.61321 -10.44535 -10.18128 -10.02883 -9.95160 -9.61750 -9.51159 -9.08274 -8.89520 -8.73733 -7.23308 -5.89825 -3.25475 0.24747 0.67460 2.06564 2.52984 2.57520 2.68590 3.09512 3.35277 3.40157 3.43792 3.60179 3.66590 3.88227 4.07619 4.25158 4.44608 4.54532 4.66319 4.73633 4.87971 4.92505 5.19158 5.25167 5.29011 5.30437 5.41225 5.47159 5.51842 5.66759 5.67785 5.88917 5.98804 6.10783 6.16402 6.27487 6.53188 6.57128 6.58200 7.02978 7.25332 7.55082 7.66171 7.86493 8.22664 9.02329 9.35826 9.83623 10.17869 11.30134 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.009852 B = 0.005154 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.269663 B = 5431.845029 C = 7152.706778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.000 4.000 3 Si 0.909 3.091 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.262 4.262 8 H 0.076 0.924 9 N -0.704 5.704 10 C 0.162 3.838 11 H 0.093 0.907 12 C 0.082 3.918 13 N -0.594 5.594 14 C 0.580 3.420 15 O -0.533 6.533 16 C 0.134 3.866 17 C -0.172 4.172 18 C 0.146 3.854 19 N -0.507 5.507 20 C 0.296 3.704 21 N -0.478 5.478 22 C 0.103 3.897 23 C 0.110 3.890 24 H 0.135 0.865 25 N -0.268 5.268 26 C -0.045 4.045 27 C -0.057 4.057 28 N -0.271 5.271 29 N -0.064 5.064 30 H 0.259 0.741 31 H 0.392 0.608 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.159 0.841 35 H 0.175 0.825 36 H 0.205 0.795 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.172 0.828 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.395 -14.733 -8.507 18.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.740 3.260 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.393 4.393 8 H 0.094 0.906 9 N -0.345 5.345 10 C 0.047 3.953 11 H 0.110 0.890 12 C -0.043 4.043 13 N -0.327 5.327 14 C 0.366 3.634 15 O -0.410 6.410 16 C -0.014 4.014 17 C -0.195 4.195 18 C -0.021 4.021 19 N -0.222 5.222 20 C 0.009 3.991 21 N -0.194 5.194 22 C -0.021 4.021 23 C 0.005 3.995 24 H 0.153 0.847 25 N -0.061 5.061 26 C -0.196 4.196 27 C -0.214 4.214 28 N -0.137 5.137 29 N -0.044 5.044 30 H 0.069 0.931 31 H 0.229 0.771 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.177 0.823 35 H 0.192 0.808 36 H 0.221 0.779 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.190 0.810 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 6.218 -13.553 -7.139 16.532 hybrid contribution 0.407 -0.317 -1.283 1.383 sum 6.624 -13.871 -8.422 17.527 Atomic orbital electron populations 1.69710 1.05185 1.26090 1.55149 1.24835 0.95458 0.97959 1.01543 0.86113 0.78772 0.83819 0.77327 1.20362 1.21685 1.21634 1.19209 0.91050 0.83464 1.45533 0.90629 1.42387 1.06271 0.98887 1.86940 1.21703 0.94931 0.86206 0.92486 0.88968 1.23650 1.03322 0.76019 1.01357 1.48499 1.66835 1.10263 1.07058 1.17493 0.78223 0.85246 0.82389 1.90798 1.51386 1.13972 1.84816 1.21510 0.95256 0.90130 0.94502 1.22950 0.99736 1.03413 0.93423 1.23343 0.90435 0.90971 0.97346 1.68391 1.13661 1.06949 1.33157 1.25180 0.90220 1.01329 0.82402 1.68761 1.10697 1.12223 1.27748 1.22602 1.01451 0.95846 0.82192 1.23384 0.75778 0.97843 1.02488 0.84720 1.47122 1.09567 1.37840 1.11580 1.23359 0.94846 1.08099 0.93276 1.23441 0.95924 1.04364 0.97682 1.75098 1.15576 1.16757 1.06267 1.78385 0.92105 1.14599 1.19278 0.93127 0.77138 0.89387 0.90283 0.82340 0.80769 0.77908 0.87991 0.89067 0.81044 0.80116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.30 13.06 55.49 0.72 -26.57 16 2 C 0.00 0.01 5.50 -17.43 -0.10 -0.09 16 3 Si 0.91 21.46 29.55 -169.99 -5.02 16.44 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.26 -6.75 9.96 -15.06 -0.15 -6.90 16 8 H 0.08 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.70 -16.31 5.11 -51.65 -0.26 -16.57 16 10 C 0.16 2.73 3.49 -66.09 -0.23 2.50 16 11 H 0.09 1.44 8.09 -51.93 -0.42 1.02 16 12 C 0.08 1.25 4.71 -3.06 -0.01 1.23 16 13 N -0.59 -7.83 2.12 -171.32 -0.36 -8.19 16 14 C 0.58 7.88 7.62 -12.05 -0.09 7.79 16 15 O -0.53 -8.03 16.68 5.38 0.09 -7.94 16 16 C 0.13 1.67 6.75 -82.64 -0.56 1.11 16 17 C -0.17 -1.69 9.72 -38.91 -0.38 -2.06 16 18 C 0.15 1.26 11.31 -17.20 -0.19 1.06 16 19 N -0.51 -5.45 10.42 -14.59 -0.15 -5.60 16 20 C 0.30 3.38 12.27 -92.26 -1.13 2.25 16 21 N -0.48 -6.21 7.07 -11.14 -0.08 -6.28 16 22 C 0.10 1.20 5.93 -2.47 -0.01 1.18 16 23 C 0.11 1.58 4.05 -65.78 -0.27 1.31 16 24 H 0.14 1.72 8.14 -51.93 -0.42 1.30 16 25 N -0.27 -4.64 2.34 -52.68 -0.12 -4.76 16 26 C -0.04 -0.73 10.01 -17.05 -0.17 -0.90 16 27 C -0.06 -0.98 12.05 -17.73 -0.21 -1.19 16 28 N -0.27 -5.60 12.41 30.24 0.38 -5.22 16 29 N -0.06 -1.33 12.47 60.35 0.75 -0.57 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.39 10.15 6.14 -40.82 -0.25 9.90 16 32 H 0.09 1.59 7.32 -51.93 -0.38 1.21 16 33 H 0.08 1.20 7.57 -51.93 -0.39 0.80 16 34 H 0.16 1.31 7.74 -52.49 -0.41 0.90 16 35 H 0.18 0.84 8.06 -52.48 -0.42 0.41 16 36 H 0.20 1.89 8.06 -52.48 -0.42 1.47 16 37 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 1.07 7.84 -51.93 -0.41 0.66 16 39 H 0.17 2.53 6.77 -52.48 -0.36 2.17 16 40 H 0.18 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 344.00 15.07 5.18 5.18 Total: -1.00 -34.14 344.00 -6.66 -40.80 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -4.27 Total: 12.00 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: -3.51 Total: 7.29 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: 0.87 Total: -73.78 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.09 Total: -7.94 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.14 -6.66 -40.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070302425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.201 kcal (2) G-P(sol) polarization free energy of solvation -34.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds