Wall clock time and date at job start Tue Mar 31 2020 06:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00024 * 2 1 4 4 H 1.48505 * 109.46851 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47182 * 300.00058 * 3 2 1 6 6 H 1.48497 * 109.46718 * 59.99812 * 3 2 1 7 7 C 1.38810 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99935 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00426 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00148 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.64325 * 31.85700 * 10 9 7 12 12 C 1.54326 * 110.72034 * 268.51800 * 10 9 7 13 13 N 1.47019 * 107.27310 * 219.44823 * 12 10 9 14 14 C 1.34778 * 125.64822 * 178.98091 * 13 12 10 15 15 O 1.21479 * 119.99891 * 179.97438 * 14 13 12 16 16 C 1.48453 * 119.99969 * 359.96836 * 14 13 12 17 17 C 1.39540 * 120.55095 * 180.02562 * 16 14 13 18 18 C 1.38754 * 118.26339 * 180.02562 * 17 16 14 19 19 N 1.32206 * 119.14889 * 0.02562 * 18 17 16 20 20 C 1.31877 * 121.03587 * 0.02562 * 19 18 17 21 21 N 1.31584 * 121.91699 * 359.71551 * 20 19 18 22 22 C 1.47524 * 108.71737 * 358.93892 * 13 12 10 23 23 C 1.54912 * 104.78241 * 24.12154 * 22 13 12 24 24 H 1.09000 * 111.00950 * 204.90544 * 23 22 13 25 25 N 1.46498 * 111.00346 * 81.08481 * 23 22 13 26 26 C 1.35311 * 125.87099 * 329.91282 * 25 23 22 27 27 C 1.35349 * 106.18014 * 180.11451 * 26 25 23 28 28 N 1.33776 * 106.49589 * 359.58896 * 27 26 25 29 29 N 1.28634 * 108.88224 * 0.26432 * 28 27 26 30 30 H 0.96996 * 119.99997 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99527 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.87975 * 338.86491 * 12 10 9 33 33 H 1.08998 * 109.87943 * 99.86688 * 12 10 9 34 34 H 1.08001 * 120.86466 * 359.97438 * 17 16 14 35 35 H 1.08007 * 120.42682 * 179.97438 * 18 17 16 36 36 H 1.08007 * 119.03925 * 179.97438 * 20 19 18 37 37 H 1.08997 * 110.37283 * 265.31689 * 22 13 12 38 38 H 1.08994 * 110.41350 * 142.95251 * 22 13 12 39 39 H 1.08005 * 126.91425 * 359.97275 * 26 25 23 40 40 H 1.08002 * 126.75754 * 179.85677 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0000 -3.5566 0.5375 12 6 2.2998 -4.1477 -1.4446 13 7 2.1113 -5.6057 -1.4471 14 6 2.2150 -6.4093 -2.5241 15 8 2.0380 -7.6056 -2.4086 16 6 2.5452 -5.8326 -3.8515 17 6 2.6549 -6.6538 -4.9743 18 6 2.9661 -6.0647 -6.1914 19 7 3.1473 -4.7562 -6.2458 20 6 3.0370 -4.0090 -5.1648 21 7 2.7388 -4.5234 -3.9910 22 6 1.7907 -6.0439 -0.0754 23 6 1.1930 -4.7901 0.6106 24 1 1.3206 -4.8382 1.6920 25 7 -0.2189 -4.6216 0.2582 26 6 -0.7974 -5.0051 -0.9034 27 6 -2.1023 -4.6588 -0.8072 28 7 -2.2582 -4.0961 0.3964 29 7 -1.1238 -4.0891 1.0028 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3880 -0.0023 32 1 1.5834 -3.6801 -2.1201 33 1 3.3157 -3.9023 -1.7542 34 1 2.5024 -7.7203 -4.8977 35 1 3.0600 -6.6674 -7.0827 36 1 3.1921 -2.9432 -5.2461 37 1 2.6952 -6.3642 0.4418 38 1 1.0582 -6.8508 -0.0954 39 1 -0.3146 -5.4882 -1.7401 40 1 -2.8681 -4.8111 -1.5534 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070302425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:21 Heat of formation + Delta-G solvation = 143.082915 kcal Electronic energy + Delta-G solvation = -28604.566372 eV Core-core repulsion = 24650.837117 eV Total energy + Delta-G solvation = -3953.729256 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.24692 -42.29721 -40.91091 -39.10632 -36.02919 -35.27326 -34.55232 -33.13194 -33.09009 -31.92078 -30.91996 -29.17438 -27.09984 -25.76320 -25.45016 -24.75382 -23.60025 -23.09632 -21.57252 -21.32307 -19.53867 -19.10871 -18.85921 -18.23908 -17.38785 -17.05387 -16.98500 -16.49827 -16.48038 -16.01346 -15.96040 -15.73437 -15.34917 -15.28388 -14.79591 -14.64355 -14.59345 -14.02876 -13.88203 -13.65724 -13.06779 -12.91086 -12.79608 -12.60076 -12.43735 -12.05022 -11.95691 -11.93259 -11.90934 -11.79000 -11.67240 -11.17395 -10.92830 -10.82294 -10.31897 -10.28952 -9.85832 -9.13704 -7.95228 -5.29002 -0.62056 -0.07839 0.69252 1.41590 1.48283 1.48983 1.54404 1.57022 1.58987 1.68151 2.52652 2.71909 2.76566 3.03026 3.16352 3.23963 3.42506 3.52843 3.61264 3.70236 3.77688 4.03122 4.03298 4.11066 4.18937 4.28404 4.32841 4.44768 4.52855 4.55854 4.61424 4.85660 4.94917 4.98759 5.17517 5.25349 5.28557 5.51534 5.71081 5.77149 6.13746 6.21617 6.70630 6.96388 7.29802 7.59356 7.97875 8.19532 9.26667 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.009852 B = 0.005154 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.269663 B = 5431.845029 C = 7152.706778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.069 4.069 3 Si 0.972 3.028 4 H -0.257 1.257 5 H -0.298 1.298 6 H -0.300 1.300 7 C -0.243 4.243 8 H 0.091 0.909 9 N -0.724 5.724 10 C 0.153 3.847 11 H 0.112 0.888 12 C 0.108 3.892 13 N -0.593 5.593 14 C 0.584 3.416 15 O -0.547 6.547 16 C 0.109 3.891 17 C -0.163 4.163 18 C 0.156 3.844 19 N -0.517 5.517 20 C 0.286 3.714 21 N -0.503 5.503 22 C 0.111 3.889 23 C 0.107 3.893 24 H 0.153 0.847 25 N -0.262 5.262 26 C -0.037 4.037 27 C -0.064 4.064 28 N -0.307 5.307 29 N -0.103 5.103 30 H 0.248 0.752 31 H 0.377 0.623 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.176 0.824 35 H 0.217 0.783 36 H 0.214 0.786 37 H 0.139 0.861 38 H 0.096 0.904 39 H 0.189 0.811 40 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.529 -16.813 -9.808 21.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.801 3.199 4 H -0.181 1.181 5 H -0.225 1.225 6 H -0.228 1.228 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.363 5.363 10 C 0.040 3.960 11 H 0.130 0.870 12 C -0.017 4.017 13 N -0.325 5.325 14 C 0.371 3.629 15 O -0.425 6.425 16 C -0.038 4.038 17 C -0.186 4.186 18 C -0.011 4.011 19 N -0.231 5.231 20 C -0.001 4.001 21 N -0.219 5.219 22 C -0.011 4.011 23 C 0.004 3.996 24 H 0.170 0.830 25 N -0.056 5.056 26 C -0.189 4.189 27 C -0.221 4.221 28 N -0.173 5.173 29 N -0.082 5.082 30 H 0.057 0.943 31 H 0.210 0.790 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.194 0.806 35 H 0.234 0.766 36 H 0.230 0.770 37 H 0.157 0.843 38 H 0.114 0.886 39 H 0.206 0.794 40 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 8.419 -15.688 -8.417 19.694 hybrid contribution -0.186 0.155 -0.987 1.016 sum 8.234 -15.533 -9.404 19.937 Atomic orbital electron populations 1.69892 1.06979 1.25907 1.58723 1.25605 0.96060 1.01321 1.03201 0.85109 0.78690 0.79904 0.76193 1.18068 1.22543 1.22776 1.19683 0.91781 0.84354 1.41649 0.89122 1.42536 1.05822 1.00428 1.87509 1.22015 0.95590 0.84626 0.93739 0.86993 1.23026 1.02541 0.77147 0.99024 1.48413 1.67044 1.09219 1.07847 1.17644 0.77596 0.84990 0.82686 1.90791 1.52156 1.14427 1.85104 1.21528 0.96939 0.90538 0.94767 1.23197 0.98468 1.03997 0.92924 1.24045 0.88289 0.90440 0.98322 1.68466 1.13897 1.08026 1.32754 1.25415 0.90333 1.02045 0.82318 1.68682 1.11792 1.12760 1.28704 1.22758 1.02906 0.94185 0.81299 1.23617 0.74146 0.98007 1.03853 0.82996 1.47342 1.10126 1.36665 1.11444 1.23631 0.94661 1.07360 0.93240 1.24058 0.97258 1.03520 0.97314 1.75035 1.16250 1.18048 1.07921 1.78305 0.92879 1.16353 1.20615 0.94291 0.78981 0.92223 0.89966 0.80638 0.76633 0.76965 0.84333 0.88561 0.79388 0.77110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.60 13.06 21.65 0.28 -59.32 16 2 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 3 Si 0.97 44.79 29.55 68.60 2.03 46.82 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 7 C -0.24 -12.45 9.96 84.03 0.84 -11.61 16 8 H 0.09 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.72 -33.49 5.11 -317.33 -1.62 -35.11 16 10 C 0.15 4.93 3.49 46.18 0.16 5.09 16 11 H 0.11 3.20 8.09 -2.39 -0.02 3.18 16 12 C 0.11 3.15 4.71 86.73 0.41 3.56 16 13 N -0.59 -14.33 2.12 -814.26 -1.73 -16.06 16 14 C 0.58 14.58 7.62 86.97 0.66 15.25 16 15 O -0.55 -15.08 16.68 -3.65 -0.06 -15.14 16 16 C 0.11 2.52 6.75 42.00 0.28 2.80 16 17 C -0.16 -2.73 9.72 22.71 0.22 -2.51 16 18 C 0.16 2.19 11.31 84.76 0.96 3.14 16 19 N -0.52 -9.99 10.42 -200.09 -2.09 -12.08 16 20 C 0.29 6.20 12.27 180.92 2.22 8.43 16 21 N -0.50 -12.49 7.07 -189.15 -1.34 -13.83 16 22 C 0.11 2.27 5.93 86.84 0.52 2.78 16 23 C 0.11 2.90 4.05 46.39 0.19 3.09 16 24 H 0.15 3.58 8.14 -2.39 -0.02 3.56 16 25 N -0.26 -8.96 2.34 -320.57 -0.75 -9.71 16 26 C -0.04 -1.19 10.01 83.49 0.84 -0.36 16 27 C -0.06 -2.18 12.05 83.73 1.01 -1.18 16 28 N -0.31 -12.98 12.41 -58.25 -0.72 -13.70 16 29 N -0.10 -4.32 12.47 37.02 0.46 -3.86 16 30 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 31 H 0.38 19.90 6.14 -92.71 -0.57 19.33 16 32 H 0.06 2.14 7.32 -2.38 -0.02 2.12 16 33 H 0.08 2.36 7.57 -2.39 -0.02 2.34 16 34 H 0.18 2.30 7.74 -2.91 -0.02 2.28 16 35 H 0.22 1.07 8.06 -2.91 -0.02 1.05 16 36 H 0.21 3.85 8.06 -2.91 -0.02 3.83 16 37 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.10 1.97 7.84 -2.39 -0.02 1.95 16 39 H 0.19 5.29 6.77 -2.91 -0.02 5.27 16 40 H 0.21 5.49 8.06 -2.91 -0.02 5.47 16 Total: -1.00 -76.58 344.00 3.76 -72.82 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: 0.53 Total: 34.05 kcal Atomic # 6 Polarization: 16.34 SS G_CDS: 8.77 Total: 25.11 kcal Atomic # 7 Polarization: -156.16 SS G_CDS: -7.50 Total: -163.66 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.06 Total: -15.14 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -76.58 3.76 -72.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070302425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.902 kcal (2) G-P(sol) polarization free energy of solvation -76.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds