Wall clock time and date at job start Tue Mar 31 2020 05:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00208 * 2 1 4 4 H 1.48502 * 109.47583 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46831 * 299.99920 * 3 2 1 6 6 H 1.48497 * 109.47398 * 59.99654 * 3 2 1 7 7 C 1.38814 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99945 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64571 * 0.02987 * 9 7 2 11 11 C 1.54917 * 104.83074 * 204.09198 * 10 9 7 12 12 H 1.08998 * 111.00524 * 81.06438 * 11 10 9 13 13 O 1.42898 * 111.00398 * 204.87574 * 11 10 9 14 14 C 1.55158 * 101.57978 * 322.98980 * 11 10 9 15 15 H 1.09003 * 110.71814 * 277.13679 * 14 11 10 16 16 N 1.46496 * 110.71649 * 154.04271 * 14 11 10 17 17 C 1.34781 * 119.99704 * 154.99666 * 16 14 11 18 18 O 1.21547 * 120.00229 * 0.02562 * 17 16 14 19 19 C 1.47845 * 119.99981 * 179.97438 * 17 16 14 20 20 C 1.40594 * 120.27892 * 359.72441 * 19 17 16 21 21 N 1.30816 * 121.52069 * 179.71596 * 20 19 17 22 22 C 1.33761 * 121.79446 * 0.59252 * 21 20 19 23 23 N 1.33889 * 120.61585 * 179.70083 * 22 21 20 24 24 C 1.31331 * 119.84385 * 179.97438 * 23 22 21 25 25 C 1.39758 * 120.77773 * 0.02562 * 24 23 22 26 26 N 1.31308 * 120.55361 * 359.97438 * 25 24 23 27 27 C 1.33659 * 119.70548 * 0.03864 * 26 25 24 28 28 C 1.38903 * 120.27718 * 180.02562 * 19 17 16 29 29 C 1.47020 * 125.65236 * 179.97438 * 9 7 2 30 30 H 0.96998 * 119.99446 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.36873 * 85.25284 * 10 9 7 32 32 H 1.09005 * 110.36491 * 322.92691 * 10 9 7 33 33 H 0.96701 * 113.99799 * 298.54877 * 13 11 10 34 34 H 0.97001 * 120.00701 * 335.00045 * 16 14 11 35 35 H 1.08006 * 119.23794 * 0.02562 * 20 19 17 36 36 H 1.08007 * 119.61024 * 180.02562 * 24 23 22 37 37 H 1.07999 * 119.72155 * 180.02562 * 25 24 23 38 38 H 1.08004 * 120.99990 * 359.95523 * 28 19 17 39 39 H 1.09000 * 109.88493 * 59.55525 * 29 9 7 40 40 H 1.09005 * 110.00581 * 298.46835 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1415 -2.5331 -0.0006 11 6 -0.4016 -3.9326 0.6107 12 1 -0.3519 -3.8989 1.6990 13 8 -1.6571 -4.4570 0.1740 14 6 0.7784 -4.7525 0.0253 15 1 0.5459 -5.0976 -0.9822 16 7 1.1057 -5.8840 0.8962 17 6 1.7076 -6.9761 0.3846 18 8 1.9793 -7.0219 -0.7992 19 6 2.0385 -8.1179 1.2636 20 6 1.7332 -8.0684 2.6351 21 7 2.0100 -9.0667 3.4339 22 6 2.6070 -10.1789 2.9911 23 7 2.8848 -11.1841 3.8308 24 6 3.4708 -12.2694 3.3797 25 6 3.8105 -12.3902 2.0294 26 7 3.5487 -11.4186 1.1858 27 6 2.9531 -10.3046 1.6226 28 6 2.6593 -9.2459 0.7426 29 6 1.9318 -3.7275 -0.0016 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5272 -2.4863 -1.0190 32 1 -0.5992 -1.7590 0.6154 33 1 -2.4190 -3.9214 0.4344 34 1 0.8893 -5.8474 1.8411 35 1 1.2545 -7.1878 3.0376 36 1 3.6929 -13.0781 4.0602 37 1 4.2916 -13.2905 1.6767 38 1 2.9089 -9.3090 -0.3063 39 1 2.5585 -3.8515 0.8815 40 1 2.5296 -3.8656 -0.9026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077149564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:32 Heat of formation + Delta-G solvation = 44.307683 kcal Electronic energy + Delta-G solvation = -26828.401263 eV Core-core repulsion = 22838.096041 eV Total energy + Delta-G solvation = -3990.305222 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.12512 -40.14599 -38.57061 -37.74271 -35.46642 -35.14422 -34.31753 -32.42780 -32.04900 -31.34683 -28.58190 -27.31770 -26.25134 -25.55469 -24.43779 -23.22678 -21.99797 -20.76118 -20.25569 -19.59391 -18.80325 -18.20974 -17.25448 -16.90178 -16.65140 -16.03279 -15.85474 -15.49943 -15.22698 -14.94168 -14.81052 -14.27641 -13.97950 -13.72745 -13.40713 -13.27189 -13.16960 -12.95839 -12.47390 -12.27404 -12.19922 -11.98067 -11.54608 -11.38342 -11.19515 -11.07938 -10.89296 -10.24785 -10.15874 -10.00132 -9.78684 -9.76692 -9.64833 -9.41856 -9.21757 -8.96678 -8.77936 -6.98766 -5.78178 -3.20716 -0.54300 -0.24368 1.28504 1.95042 2.87117 2.95393 3.02243 3.34198 3.40369 3.42551 3.50552 3.57212 3.58163 4.09432 4.15893 4.30382 4.34730 4.46291 4.51457 4.54911 4.76665 5.04571 5.19555 5.33855 5.36453 5.46841 5.54259 5.57376 5.77117 5.83831 6.00086 6.06809 6.29397 6.44030 6.57457 6.77707 6.94874 7.24233 7.38899 7.42212 7.49441 7.65617 8.03110 8.07831 8.19843 9.07974 9.68360 10.29798 11.26318 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.024347 B = 0.002383 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.777653 B =11747.241011 C =12027.346834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.011 4.011 3 Si 0.918 3.082 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.223 4.223 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.128 3.872 11 C 0.066 3.934 12 H 0.064 0.936 13 O -0.566 6.566 14 C 0.140 3.860 15 H 0.106 0.894 16 N -0.704 5.704 17 C 0.564 3.436 18 O -0.525 6.525 19 C -0.172 4.172 20 C 0.194 3.806 21 N -0.455 5.455 22 C 0.271 3.729 23 N -0.418 5.418 24 C 0.113 3.887 25 C 0.072 3.928 26 N -0.404 5.404 27 C 0.019 3.981 28 C 0.039 3.961 29 C 0.129 3.871 30 H 0.253 0.747 31 H 0.027 0.973 32 H 0.114 0.886 33 H 0.379 0.621 34 H 0.398 0.602 35 H 0.177 0.823 36 H 0.185 0.815 37 H 0.184 0.816 38 H 0.168 0.832 39 H 0.032 0.968 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.010 -22.652 7.025 23.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.206 4.206 3 Si 0.748 3.252 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.351 4.351 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.002 3.998 11 C 0.006 3.994 12 H 0.081 0.919 13 O -0.371 6.371 14 C 0.036 3.964 15 H 0.124 0.876 16 N -0.354 5.354 17 C 0.348 3.652 18 O -0.401 6.401 19 C -0.179 4.179 20 C 0.017 3.983 21 N -0.164 5.164 22 C 0.032 3.968 23 N -0.133 5.133 24 C -0.067 4.067 25 C -0.105 4.105 26 N -0.118 5.118 27 C -0.108 4.108 28 C 0.012 3.988 29 C 0.002 3.998 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.132 0.868 33 H 0.226 0.774 34 H 0.234 0.766 35 H 0.194 0.806 36 H 0.202 0.798 37 H 0.201 0.799 38 H 0.185 0.815 39 H 0.050 0.950 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.278 -22.716 6.788 23.934 hybrid contribution 0.260 1.144 -0.153 1.183 sum 3.537 -21.572 6.635 22.845 Atomic orbital electron populations 1.69732 1.04954 1.24950 1.57619 1.24807 0.95797 0.97878 1.02108 0.85944 0.78695 0.83227 0.77304 1.20434 1.21634 1.21644 1.19148 0.90659 0.82046 1.43219 0.90095 1.44286 1.01460 0.99745 1.87245 1.22594 0.85644 0.91895 0.99633 1.23653 0.82619 0.96026 0.97100 0.91866 1.86401 1.15981 1.53416 1.81331 1.22123 0.94434 0.84701 0.95137 0.87607 1.45880 1.60301 1.16524 1.12701 1.17763 0.78303 0.81875 0.87225 1.90822 1.52806 1.80956 1.15548 1.21232 1.04006 0.96921 0.95774 1.23352 0.90945 0.95734 0.88306 1.67489 1.11961 0.99220 1.37727 1.20103 0.95468 0.93043 0.88202 1.68347 1.09232 0.99446 1.36252 1.24356 0.91482 0.95244 0.95620 1.24254 0.96754 0.98312 0.91147 1.68614 1.07046 0.99167 1.37014 1.20209 1.01409 0.95284 0.93849 1.21824 0.88008 0.88024 1.00985 1.21624 0.93578 0.85344 0.99240 0.93582 0.95544 0.86821 0.77351 0.76606 0.80601 0.79785 0.79903 0.81451 0.95039 0.94674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.73 10.09 55.49 0.56 -25.17 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 3 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.22 -6.00 10.27 -15.06 -0.15 -6.16 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -14.74 3.39 -170.07 -0.58 -15.31 16 10 C 0.13 2.91 5.62 -2.53 -0.01 2.90 16 11 C 0.07 1.17 4.06 -24.58 -0.10 1.07 16 12 H 0.06 1.01 8.01 -51.93 -0.42 0.60 16 13 O -0.57 -9.14 13.47 -35.23 -0.47 -9.62 16 14 C 0.14 2.48 3.05 -66.10 -0.20 2.28 16 15 H 0.11 2.08 7.55 -51.93 -0.39 1.69 16 16 N -0.70 -9.72 5.07 -52.98 -0.27 -9.98 16 17 C 0.56 8.10 7.78 -12.33 -0.10 8.00 16 18 O -0.52 -9.41 16.03 5.32 0.09 -9.32 16 19 C -0.17 -2.02 5.88 -104.83 -0.62 -2.64 16 20 C 0.19 2.04 10.69 -17.10 -0.18 1.85 16 21 N -0.46 -5.68 10.39 -12.28 -0.13 -5.81 16 22 C 0.27 3.35 7.60 -157.60 -1.20 2.15 16 23 N -0.42 -4.56 10.55 -12.39 -0.13 -4.69 16 24 C 0.11 0.71 11.21 -17.20 -0.19 0.52 16 25 C 0.07 0.44 11.22 -17.21 -0.19 0.25 16 26 N -0.40 -4.04 10.46 -10.77 -0.11 -4.16 16 27 C 0.02 0.22 6.59 -84.78 -0.56 -0.34 16 28 C 0.04 0.46 9.68 -38.38 -0.37 0.09 16 29 C 0.13 2.66 7.00 -3.07 -0.02 2.64 16 30 H 0.25 6.84 8.31 -40.82 -0.34 6.51 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.11 2.84 5.88 -51.93 -0.31 2.54 16 33 H 0.38 4.67 9.11 45.56 0.42 5.09 16 34 H 0.40 4.24 6.59 -40.82 -0.27 3.97 16 35 H 0.18 1.29 6.38 -52.48 -0.33 0.95 16 36 H 0.19 0.31 8.06 -52.48 -0.42 -0.12 16 37 H 0.18 0.30 8.06 -52.49 -0.42 -0.12 16 38 H 0.17 1.90 7.70 -52.48 -0.40 1.49 16 39 H 0.03 0.62 8.03 -51.93 -0.42 0.21 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 344.25 15.07 5.19 5.19 Total: -1.00 -35.66 344.25 -8.24 -43.90 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -3.36 Total: 6.30 kcal Atomic # 6 Polarization: 16.22 SS G_CDS: -4.00 Total: 12.22 kcal Atomic # 7 Polarization: -64.47 SS G_CDS: -0.66 Total: -65.12 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.39 Total: -18.94 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.66 -8.24 -43.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077149564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.205 kcal (2) G-P(sol) polarization free energy of solvation -35.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds