Wall clock time and date at job start Tue Mar 31 2020 05:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00208 * 2 1 4 4 H 1.48502 * 109.47583 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46831 * 299.99920 * 3 2 1 6 6 H 1.48497 * 109.47398 * 59.99654 * 3 2 1 7 7 C 1.38814 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99945 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64571 * 0.02987 * 9 7 2 11 11 C 1.54917 * 104.83074 * 204.09198 * 10 9 7 12 12 H 1.08998 * 111.00524 * 81.06438 * 11 10 9 13 13 O 1.42898 * 111.00398 * 204.87574 * 11 10 9 14 14 C 1.55158 * 101.57978 * 322.98980 * 11 10 9 15 15 H 1.09003 * 110.71814 * 277.13679 * 14 11 10 16 16 N 1.46496 * 110.71649 * 154.04271 * 14 11 10 17 17 C 1.34781 * 119.99704 * 154.99666 * 16 14 11 18 18 O 1.21547 * 120.00229 * 0.02562 * 17 16 14 19 19 C 1.47845 * 119.99981 * 179.97438 * 17 16 14 20 20 C 1.40594 * 120.27892 * 359.72441 * 19 17 16 21 21 N 1.30816 * 121.52069 * 179.71596 * 20 19 17 22 22 C 1.33761 * 121.79446 * 0.59252 * 21 20 19 23 23 N 1.33889 * 120.61585 * 179.70083 * 22 21 20 24 24 C 1.31331 * 119.84385 * 179.97438 * 23 22 21 25 25 C 1.39758 * 120.77773 * 0.02562 * 24 23 22 26 26 N 1.31308 * 120.55361 * 359.97438 * 25 24 23 27 27 C 1.33659 * 119.70548 * 0.03864 * 26 25 24 28 28 C 1.38903 * 120.27718 * 180.02562 * 19 17 16 29 29 C 1.47020 * 125.65236 * 179.97438 * 9 7 2 30 30 H 0.96998 * 119.99446 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.36873 * 85.25284 * 10 9 7 32 32 H 1.09005 * 110.36491 * 322.92691 * 10 9 7 33 33 H 0.96701 * 113.99799 * 298.54877 * 13 11 10 34 34 H 0.97001 * 120.00701 * 335.00045 * 16 14 11 35 35 H 1.08006 * 119.23794 * 0.02562 * 20 19 17 36 36 H 1.08007 * 119.61024 * 180.02562 * 24 23 22 37 37 H 1.07999 * 119.72155 * 180.02562 * 25 24 23 38 38 H 1.08004 * 120.99990 * 359.95523 * 28 19 17 39 39 H 1.09000 * 109.88493 * 59.55525 * 29 9 7 40 40 H 1.09005 * 110.00581 * 298.46835 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1415 -2.5331 -0.0006 11 6 -0.4016 -3.9326 0.6107 12 1 -0.3519 -3.8989 1.6990 13 8 -1.6571 -4.4570 0.1740 14 6 0.7784 -4.7525 0.0253 15 1 0.5459 -5.0976 -0.9822 16 7 1.1057 -5.8840 0.8962 17 6 1.7076 -6.9761 0.3846 18 8 1.9793 -7.0219 -0.7992 19 6 2.0385 -8.1179 1.2636 20 6 1.7332 -8.0684 2.6351 21 7 2.0100 -9.0667 3.4339 22 6 2.6070 -10.1789 2.9911 23 7 2.8848 -11.1841 3.8308 24 6 3.4708 -12.2694 3.3797 25 6 3.8105 -12.3902 2.0294 26 7 3.5487 -11.4186 1.1858 27 6 2.9531 -10.3046 1.6226 28 6 2.6593 -9.2459 0.7426 29 6 1.9318 -3.7275 -0.0016 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5272 -2.4863 -1.0190 32 1 -0.5992 -1.7590 0.6154 33 1 -2.4190 -3.9214 0.4344 34 1 0.8893 -5.8474 1.8411 35 1 1.2545 -7.1878 3.0376 36 1 3.6929 -13.0781 4.0602 37 1 4.2916 -13.2905 1.6767 38 1 2.9089 -9.3090 -0.3063 39 1 2.5585 -3.8515 0.8815 40 1 2.5296 -3.8656 -0.9026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077149564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:31 Heat of formation + Delta-G solvation = 14.044929 kcal Electronic energy + Delta-G solvation = -26829.713555 eV Core-core repulsion = 22838.096041 eV Total energy + Delta-G solvation = -3991.617514 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.85994 -41.30193 -39.72233 -38.94773 -36.67056 -36.18375 -35.75380 -33.80469 -33.15765 -32.33161 -30.23518 -28.86509 -27.26373 -26.44837 -26.01497 -24.04100 -23.12161 -22.36445 -21.78116 -20.51377 -19.67965 -19.07920 -18.99890 -18.24382 -17.66807 -17.27082 -16.82220 -16.65327 -16.21109 -16.08948 -15.79165 -15.70913 -15.48511 -14.99652 -14.73808 -14.49711 -14.06610 -14.01046 -13.91818 -13.71113 -13.21884 -13.11270 -13.04699 -12.87464 -12.83593 -12.75924 -12.06342 -12.02013 -11.93979 -11.43109 -11.34880 -10.94449 -10.76837 -10.64664 -10.42057 -10.23483 -9.94619 -8.96806 -7.82247 -5.27920 -1.28918 -0.94822 0.51196 1.17925 1.47884 1.49004 1.58887 1.74303 1.97700 2.34815 2.46729 2.78569 2.81384 2.88830 3.07158 3.28564 3.31058 3.42434 3.54841 3.61849 3.74012 3.84077 3.90488 4.07087 4.19172 4.29593 4.31933 4.44910 4.56782 4.59592 4.76246 4.83874 4.89138 5.21516 5.33791 5.39258 5.45429 5.68689 5.78323 6.21826 6.28844 6.30808 6.70016 6.86890 6.96050 7.05548 7.69311 8.30793 9.19729 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.024347 B = 0.002383 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.777653 B =11747.241011 C =12027.346834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.061 4.061 3 Si 0.981 3.019 4 H -0.269 1.269 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.240 4.240 8 H 0.081 0.919 9 N -0.619 5.619 10 C 0.132 3.868 11 C 0.091 3.909 12 H 0.092 0.908 13 O -0.568 6.568 14 C 0.155 3.845 15 H 0.084 0.916 16 N -0.690 5.690 17 C 0.570 3.430 18 O -0.565 6.565 19 C -0.177 4.177 20 C 0.199 3.801 21 N -0.477 5.477 22 C 0.254 3.746 23 N -0.456 5.456 24 C 0.134 3.866 25 C 0.092 3.908 26 N -0.434 5.434 27 C 0.003 3.997 28 C 0.037 3.963 29 C 0.129 3.871 30 H 0.250 0.750 31 H -0.007 1.007 32 H 0.092 0.908 33 H 0.398 0.602 34 H 0.417 0.583 35 H 0.205 0.795 36 H 0.237 0.763 37 H 0.234 0.766 38 H 0.162 0.838 39 H 0.045 0.955 40 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.886 -25.168 8.904 26.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.254 4.254 3 Si 0.810 3.190 4 H -0.194 1.194 5 H -0.221 1.221 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.099 0.901 9 N -0.346 5.346 10 C 0.006 3.994 11 C 0.030 3.970 12 H 0.109 0.891 13 O -0.376 6.376 14 C 0.049 3.951 15 H 0.102 0.898 16 N -0.342 5.342 17 C 0.356 3.644 18 O -0.445 6.445 19 C -0.184 4.184 20 C 0.022 3.978 21 N -0.186 5.186 22 C 0.015 3.985 23 N -0.171 5.171 24 C -0.045 4.045 25 C -0.086 4.086 26 N -0.149 5.149 27 C -0.121 4.121 28 C 0.009 3.991 29 C 0.003 3.997 30 H 0.060 0.940 31 H 0.011 0.989 32 H 0.110 0.890 33 H 0.248 0.752 34 H 0.256 0.744 35 H 0.221 0.779 36 H 0.253 0.747 37 H 0.251 0.749 38 H 0.180 0.820 39 H 0.063 0.937 40 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 4.126 -25.222 8.698 26.997 hybrid contribution 0.080 1.651 -0.729 1.807 sum 4.206 -23.571 7.969 25.235 Atomic orbital electron populations 1.69950 1.06040 1.25285 1.58252 1.25601 0.96719 1.00842 1.02262 0.84970 0.78016 0.79230 0.76831 1.19388 1.22110 1.21319 1.19460 0.91054 0.83339 1.43047 0.90095 1.44533 1.02425 1.00565 1.87126 1.22413 0.84671 0.94675 0.97673 1.23289 0.83242 0.92457 0.97995 0.89086 1.86377 1.16074 1.53525 1.81596 1.21636 0.93399 0.85029 0.94995 0.89775 1.45601 1.60108 1.15293 1.13205 1.18067 0.77180 0.82212 0.86906 1.90804 1.54439 1.81744 1.17482 1.20908 1.05559 0.95991 0.95974 1.23664 0.90478 0.96237 0.87430 1.67524 1.12883 0.99906 1.38270 1.20340 0.95844 0.93570 0.88745 1.68431 1.11370 1.00591 1.36749 1.25330 0.87971 0.94625 0.96619 1.25199 0.94203 0.98414 0.90771 1.68674 1.08239 0.99661 1.38293 1.20164 1.02442 0.95994 0.93543 1.21869 0.87871 0.88450 1.00940 1.21695 0.94592 0.84565 0.98877 0.93995 0.98919 0.89030 0.75199 0.74404 0.77855 0.74723 0.74939 0.82006 0.93678 0.96380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -53.83 10.09 21.65 0.22 -53.61 16 2 C -0.06 -3.37 5.49 84.86 0.47 -2.91 16 3 Si 0.98 44.53 29.55 68.60 2.03 46.56 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.24 -13.17 10.27 84.03 0.86 -12.31 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 9 N -0.62 -31.06 3.39 -691.99 -2.35 -33.41 16 10 C 0.13 6.12 5.62 86.86 0.49 6.61 16 11 C 0.09 3.12 4.06 31.99 0.13 3.25 16 12 H 0.09 2.69 8.01 -2.39 -0.02 2.68 16 13 O -0.57 -17.66 13.47 -148.98 -2.01 -19.66 16 14 C 0.16 5.48 3.05 46.18 0.14 5.62 16 15 H 0.08 3.40 7.55 -2.39 -0.02 3.38 16 16 N -0.69 -18.47 5.07 -439.79 -2.23 -20.70 16 17 C 0.57 16.42 7.78 86.79 0.67 17.09 16 18 O -0.57 -20.90 16.03 -3.86 -0.06 -20.96 16 19 C -0.18 -4.15 5.88 -20.00 -0.12 -4.27 16 20 C 0.20 3.99 10.69 85.42 0.91 4.90 16 21 N -0.48 -11.55 10.39 -192.75 -2.00 -13.55 16 22 C 0.25 6.02 7.60 134.96 1.03 7.05 16 23 N -0.46 -9.00 10.55 -193.10 -2.04 -11.04 16 24 C 0.13 1.16 11.21 85.14 0.95 2.11 16 25 C 0.09 0.77 11.22 85.14 0.96 1.72 16 26 N -0.43 -7.92 10.46 -187.99 -1.97 -9.89 16 27 C 0.00 0.07 6.59 40.35 0.27 0.33 16 28 C 0.04 0.87 9.68 23.05 0.22 1.09 16 29 C 0.13 5.40 7.00 86.73 0.61 6.01 16 30 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 31 H -0.01 -0.38 8.14 -2.39 -0.02 -0.39 16 32 H 0.09 4.70 5.88 -2.38 -0.01 4.68 16 33 H 0.40 9.22 9.11 -74.06 -0.67 8.54 16 34 H 0.42 8.01 6.59 -92.71 -0.61 7.40 16 35 H 0.21 2.59 6.38 -2.91 -0.02 2.57 16 36 H 0.24 -0.60 8.06 -2.91 -0.02 -0.62 16 37 H 0.23 -0.57 8.06 -2.91 -0.02 -0.60 16 38 H 0.16 3.88 7.70 -2.91 -0.02 3.86 16 39 H 0.05 1.77 8.03 -2.39 -0.02 1.75 16 40 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -81.43 344.25 -2.97 -84.41 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -0.16 Total: 15.53 kcal Atomic # 6 Polarization: 28.73 SS G_CDS: 7.59 Total: 36.32 kcal Atomic # 7 Polarization: -131.83 SS G_CDS: -10.36 Total: -142.19 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -2.07 Total: -40.62 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -81.43 -2.97 -84.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077149564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.450 kcal (2) G-P(sol) polarization free energy of solvation -81.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds