Wall clock time and date at job start Tue Mar 31 2020 06:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99662 * 2 1 4 4 H 1.48501 * 109.47490 * 264.53935 * 3 2 1 5 5 H 1.48500 * 109.47299 * 24.54065 * 3 2 1 6 6 H 1.48503 * 109.46906 * 144.54125 * 3 2 1 7 7 C 1.38813 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00111 * 337.61190 * 7 2 1 9 9 N 1.36942 * 119.99680 * 157.61555 * 7 2 1 10 10 C 1.47422 * 125.65143 * 341.47098 * 9 7 2 11 11 C 1.55116 * 104.94196 * 204.04184 * 10 9 7 12 12 H 1.08997 * 110.93717 * 81.21720 * 11 10 9 13 13 O 1.42905 * 111.15776 * 205.13197 * 11 10 9 14 14 C 1.55159 * 101.48701 * 323.21689 * 11 10 9 15 15 H 1.08996 * 110.72331 * 276.83378 * 14 11 10 16 16 N 1.46495 * 110.71857 * 153.73583 * 14 11 10 17 17 C 1.34771 * 120.00140 * 157.44606 * 16 14 11 18 18 O 1.21286 * 119.99868 * 359.97438 * 17 16 14 19 19 C 1.50699 * 120.00551 * 180.02562 * 17 16 14 20 20 C 1.50696 * 109.47408 * 179.97438 * 19 17 16 21 21 C 1.34236 * 126.50420 * 264.97417 * 20 19 17 22 22 N 1.36828 * 109.93589 * 180.02562 * 21 20 19 23 23 H 0.96998 * 125.06867 * 180.02562 * 22 21 20 24 24 C 1.37692 * 109.87085 * 359.97438 * 22 21 20 25 25 C 1.39127 * 133.50986 * 179.97438 * 24 22 21 26 26 C 1.37739 * 119.78107 * 180.02562 * 25 24 22 27 27 C 1.38836 * 120.66754 * 359.69957 * 26 25 24 28 28 C 1.36619 * 120.52378 * 0.60051 * 27 26 25 29 29 C 1.39635 * 119.76777 * 359.41526 * 28 27 26 30 30 C 1.47019 * 125.64414 * 161.51408 * 9 7 2 31 31 H 0.97000 * 120.00511 * 359.97438 * 1 2 3 32 32 H 1.09008 * 110.36483 * 323.00422 * 10 9 7 33 33 H 1.08998 * 110.36832 * 85.21132 * 10 9 7 34 34 H 0.96707 * 113.99923 * 292.16359 * 13 11 10 35 35 H 0.97001 * 120.00221 * 337.44744 * 16 14 11 36 36 H 1.08995 * 109.47104 * 59.99330 * 19 17 16 37 37 H 1.09002 * 109.46561 * 299.99590 * 19 17 16 38 38 H 1.07998 * 125.03173 * 0.02562 * 21 20 19 39 39 H 1.08006 * 120.10523 * 0.06260 * 25 24 22 40 40 H 1.08004 * 119.66595 * 179.97438 * 26 25 24 41 41 H 1.07999 * 119.73879 * 180.28776 * 27 26 25 42 42 H 1.08003 * 120.11846 * 179.69222 * 28 27 26 43 43 H 1.08990 * 109.88664 * 59.48830 * 30 9 7 44 44 H 1.09002 * 110.01076 * 298.38723 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6130 1.9799 -1.3937 5 1 1.3946 2.6832 0.5815 6 1 3.4852 1.4763 0.8122 7 6 2.0103 -1.2022 -0.0005 8 1 1.5314 -2.1024 0.3553 9 7 3.3023 -1.2465 -0.4522 10 6 3.9503 -0.2322 -1.3034 11 6 5.0992 -0.9875 -2.0215 12 1 4.7233 -1.5414 -2.8817 13 8 6.1430 -0.0914 -2.4083 14 6 5.5798 -1.9522 -0.9054 15 1 6.2744 -1.4487 -0.2330 16 7 6.1969 -3.1481 -1.4843 17 6 7.0646 -3.8783 -0.7562 18 8 7.3350 -3.5451 0.3782 19 6 7.6999 -5.1083 -1.3518 20 6 8.6226 -5.7373 -0.3400 21 6 9.9462 -5.5398 -0.2351 22 7 10.4476 -6.2796 0.8011 23 1 11.3789 -6.3007 1.0713 24 6 9.4328 -6.9887 1.4039 25 6 9.3888 -7.8746 2.4757 26 6 8.1883 -8.4369 2.8497 27 6 7.0180 -8.1241 2.1714 28 6 7.0393 -7.2614 1.1123 29 6 8.2453 -6.6799 0.7159 30 6 4.2726 -2.3142 -0.1692 31 1 -0.4851 0.8400 0.0004 32 1 3.2408 0.1616 -2.0312 33 1 4.3528 0.5753 -0.6918 34 1 5.8894 0.5310 -3.1038 35 1 5.9809 -3.4145 -2.3917 36 1 8.2692 -4.8299 -2.2386 37 1 6.9228 -5.8210 -1.6279 38 1 10.5291 -4.8929 -0.8739 39 1 10.2930 -8.1201 3.0131 40 1 8.1564 -9.1247 3.6818 41 1 6.0842 -8.5702 2.4804 42 1 6.1257 -7.0265 0.5862 43 1 3.8924 -3.2675 -0.5361 44 1 4.4564 -2.3765 0.9034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078063205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:25 Heat of formation + Delta-G solvation = 8.871339 kcal Electronic energy + Delta-G solvation = -27494.033875 eV Core-core repulsion = 23605.732362 eV Total energy + Delta-G solvation = -3888.301514 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.39037 -39.65852 -38.05488 -36.96410 -35.36999 -34.05671 -33.17759 -31.91919 -30.42060 -29.38658 -28.88998 -27.79635 -26.84026 -24.16569 -22.93396 -21.85646 -21.27712 -21.12261 -20.03807 -19.37264 -17.95945 -17.40017 -17.18514 -16.63368 -16.49075 -15.97123 -15.57532 -15.05169 -14.73776 -14.51175 -14.34775 -14.03757 -13.84469 -13.77377 -13.42445 -13.14392 -13.02903 -12.79471 -12.68825 -12.31828 -12.08191 -11.91980 -11.74424 -11.50633 -11.38622 -11.22775 -10.89652 -10.84733 -10.46355 -10.06664 -9.91641 -9.72268 -9.52498 -9.39332 -8.89119 -8.65220 -8.28111 -7.74333 -7.11085 -5.98179 -3.29903 1.06033 1.57734 2.48778 2.86231 2.99414 3.29672 3.40786 3.47489 3.51538 3.88760 4.22743 4.51314 4.60172 4.66283 4.79280 4.89515 4.99200 5.02442 5.10553 5.16945 5.23715 5.31552 5.36068 5.39570 5.42771 5.45175 5.59016 5.73359 5.80715 5.87033 5.89220 6.03894 6.35684 6.39347 6.40864 6.49197 6.54911 6.60528 6.64118 6.68472 6.82820 7.08237 7.39405 7.61062 7.70217 7.79649 8.26990 8.46058 8.78374 9.63876 10.09383 11.17573 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.017835 B = 0.002828 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.567979 B = 9897.934245 C =10926.737957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.023 3.977 3 Si 0.882 3.118 4 H -0.286 1.286 5 H -0.301 1.301 6 H -0.275 1.275 7 C -0.243 4.243 8 H 0.095 0.905 9 N -0.604 5.604 10 C 0.086 3.914 11 C 0.082 3.918 12 H 0.073 0.927 13 O -0.561 6.561 14 C 0.143 3.857 15 H 0.102 0.898 16 N -0.720 5.720 17 C 0.511 3.489 18 O -0.527 6.527 19 C -0.064 4.064 20 C -0.150 4.150 21 C 0.062 3.938 22 N -0.596 5.596 23 H 0.414 0.586 24 C 0.094 3.906 25 C -0.133 4.133 26 C -0.101 4.101 27 C -0.148 4.148 28 C -0.065 4.065 29 C -0.089 4.089 30 C 0.129 3.871 31 H 0.264 0.736 32 H 0.065 0.935 33 H 0.038 0.962 34 H 0.378 0.622 35 H 0.398 0.602 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.168 0.832 39 H 0.117 0.883 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.040 0.960 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.149 -14.626 -4.908 26.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.213 1.213 5 H -0.229 1.229 6 H -0.201 1.201 7 C -0.370 4.370 8 H 0.113 0.887 9 N -0.332 5.332 10 C -0.041 4.041 11 C 0.021 3.979 12 H 0.091 0.909 13 O -0.366 6.366 14 C 0.038 3.962 15 H 0.120 0.880 16 N -0.372 5.372 17 C 0.297 3.703 18 O -0.402 6.402 19 C -0.105 4.105 20 C -0.157 4.157 21 C -0.065 4.065 22 N -0.198 5.198 23 H 0.251 0.749 24 C -0.012 4.012 25 C -0.154 4.154 26 C -0.120 4.120 27 C -0.167 4.167 28 C -0.084 4.084 29 C -0.094 4.094 30 C 0.003 3.997 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.225 0.775 35 H 0.232 0.768 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.185 0.815 39 H 0.135 0.865 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.058 0.942 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 21.574 -14.615 -3.551 26.299 hybrid contribution 0.370 1.353 -0.612 1.530 sum 21.944 -13.263 -4.163 25.976 Atomic orbital electron populations 1.69835 1.05505 1.26672 1.52975 1.25008 0.95191 0.97376 1.00005 0.87007 0.79361 0.84703 0.77734 1.21334 1.22856 1.20068 1.18659 0.83888 0.95644 1.38759 0.88717 1.44591 1.09861 1.22122 1.56628 1.22622 0.93763 0.93382 0.94302 1.23318 0.87669 0.90835 0.96034 0.90919 1.86477 1.38865 1.50780 1.60470 1.21936 0.95430 0.84209 0.94615 0.88007 1.45952 1.45764 1.27818 1.17625 1.20655 0.78841 0.84505 0.86298 1.90733 1.61296 1.70011 1.18158 1.19933 0.98544 0.94906 0.97103 1.19529 0.92785 1.03089 1.00313 1.21509 0.94500 0.97817 0.92639 1.41642 1.09351 1.40134 1.28693 0.74924 1.18228 0.88082 0.97781 0.97128 1.19978 0.98735 0.99573 0.97135 1.20780 0.91840 0.99744 0.99661 1.20634 0.98246 1.00512 0.97279 1.20297 0.96148 0.95448 0.96500 1.18993 0.92895 0.99991 0.97492 1.21719 0.87128 0.92898 0.97989 0.92613 0.91732 0.94499 0.77531 0.76790 0.88319 0.88169 0.81470 0.86526 0.85942 0.86048 0.86189 0.94156 0.93981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.85 13.97 55.49 0.78 -27.07 16 2 C 0.02 0.67 5.43 -17.43 -0.09 0.57 16 3 Si 0.88 22.64 24.27 -169.99 -4.13 18.51 16 4 H -0.29 -6.90 6.49 56.52 0.37 -6.53 16 5 H -0.30 -7.82 7.11 56.52 0.40 -7.41 16 6 H -0.27 -7.14 6.66 56.52 0.38 -6.76 16 7 C -0.24 -6.91 10.57 -15.06 -0.16 -7.07 16 8 H 0.10 2.85 8.06 -52.49 -0.42 2.43 16 9 N -0.60 -14.69 3.21 -169.94 -0.54 -15.24 16 10 C 0.09 1.83 4.44 -2.42 -0.01 1.82 16 11 C 0.08 1.35 4.06 -24.47 -0.10 1.25 16 12 H 0.07 1.05 8.00 -51.93 -0.42 0.63 16 13 O -0.56 -8.38 13.48 -35.23 -0.47 -8.85 16 14 C 0.14 2.51 3.00 -66.09 -0.20 2.32 16 15 H 0.10 2.03 7.62 -51.93 -0.40 1.63 16 16 N -0.72 -9.79 5.12 -52.03 -0.27 -10.06 16 17 C 0.51 7.33 7.82 -10.99 -0.09 7.25 16 18 O -0.53 -10.07 15.72 5.55 0.09 -9.98 16 19 C -0.06 -0.65 6.23 -29.04 -0.18 -0.83 16 20 C -0.15 -1.77 4.81 -102.71 -0.49 -2.27 16 21 C 0.06 0.61 11.73 -16.73 -0.20 0.41 16 22 N -0.60 -5.60 6.07 -10.65 -0.06 -5.66 16 23 H 0.41 2.49 8.96 -40.82 -0.37 2.13 16 24 C 0.09 1.12 7.28 -83.99 -0.61 0.51 16 25 C -0.13 -1.39 10.08 -39.43 -0.40 -1.79 16 26 C -0.10 -1.03 10.01 -39.54 -0.40 -1.43 16 27 C -0.15 -1.65 9.97 -39.95 -0.40 -2.05 16 28 C -0.07 -0.83 10.05 -39.65 -0.40 -1.23 16 29 C -0.09 -1.18 6.35 -105.14 -0.67 -1.85 16 30 C 0.13 2.69 7.00 -3.06 -0.02 2.67 16 31 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 32 H 0.06 1.42 6.63 -51.92 -0.34 1.07 16 33 H 0.04 0.86 5.57 -51.93 -0.29 0.57 16 34 H 0.38 3.97 9.12 45.56 0.42 4.38 16 35 H 0.40 4.08 8.54 -40.82 -0.35 3.74 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 40 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 41 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 43 H 0.04 0.81 8.03 -51.93 -0.42 0.39 16 44 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 364.48 15.07 5.49 5.49 Total: -1.00 -37.67 364.48 -8.69 -46.36 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.16 Total: 8.21 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -4.41 Total: -1.71 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -0.10 Total: -58.03 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.39 Total: -18.83 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.13 Total: 18.51 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.67 -8.69 -46.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078063205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.233 kcal (2) G-P(sol) polarization free energy of solvation -37.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds