Wall clock time and date at job start Tue Mar 31 2020 06:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99777 * 2 1 4 4 H 1.48495 * 109.47123 * 274.13835 * 3 2 1 5 5 H 1.48498 * 109.47250 * 34.13925 * 3 2 1 6 6 H 1.48504 * 109.46949 * 154.13774 * 3 2 1 7 7 C 1.38811 * 120.00571 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00541 * 170.42729 * 7 2 1 9 9 N 1.36943 * 119.99640 * 350.42484 * 7 2 1 10 10 C 1.47422 * 125.64804 * 349.97837 * 9 7 2 11 11 C 1.55117 * 104.94238 * 203.96945 * 10 9 7 12 12 H 1.09002 * 110.93367 * 81.22433 * 11 10 9 13 13 O 1.42907 * 111.16222 * 205.13341 * 11 10 9 14 14 C 1.55149 * 101.48842 * 323.22523 * 11 10 9 15 15 H 1.09000 * 110.72302 * 276.83147 * 14 11 10 16 16 N 1.46507 * 110.72067 * 153.73200 * 14 11 10 17 17 C 1.34776 * 119.99976 * 157.44198 * 16 14 11 18 18 O 1.21288 * 120.00275 * 0.02562 * 17 16 14 19 19 C 1.50698 * 120.00054 * 180.02562 * 17 16 14 20 20 N 1.46502 * 109.47048 * 180.02562 * 19 17 16 21 21 C 1.36832 * 125.06112 * 264.97360 * 20 19 17 22 22 C 1.34234 * 109.92825 * 180.02562 * 21 20 19 23 23 C 1.46486 * 106.99940 * 359.97438 * 22 21 20 24 24 C 1.39631 * 134.03690 * 179.97438 * 23 22 21 25 25 C 1.36623 * 119.76612 * 180.02562 * 24 23 22 26 26 C 1.38826 * 120.52688 * 359.97438 * 25 24 23 27 27 C 1.37744 * 120.66769 * 0.02562 * 26 25 24 28 28 C 1.37685 * 125.06685 * 85.01680 * 20 19 17 29 29 C 1.47023 * 125.64777 * 169.94299 * 9 7 2 30 30 H 0.96996 * 120.00656 * 0.02562 * 1 2 3 31 31 H 1.09001 * 110.37070 * 322.93580 * 10 9 7 32 32 H 1.09005 * 110.36377 * 85.14867 * 10 9 7 33 33 H 0.96701 * 114.00258 * 292.17372 * 13 11 10 34 34 H 0.97000 * 120.00007 * 337.44789 * 16 14 11 35 35 H 1.09005 * 109.46956 * 60.00175 * 19 17 16 36 36 H 1.08992 * 109.47205 * 299.99949 * 19 17 16 37 37 H 1.08001 * 125.04003 * 0.03771 * 21 20 19 38 38 H 1.08000 * 126.50213 * 179.74369 * 22 21 20 39 39 H 1.08004 * 120.11365 * 0.07205 * 24 23 22 40 40 H 1.07999 * 119.73608 * 179.97438 * 25 24 23 41 41 H 1.08005 * 119.66555 * 179.97438 * 26 25 24 42 42 H 1.08007 * 120.11218 * 180.02562 * 27 26 25 43 43 H 1.09001 * 109.88199 * 59.55737 * 29 9 7 44 44 H 1.08995 * 110.01488 * 298.46517 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4101 2.0970 -1.3964 5 1 1.4940 2.6259 0.7857 6 1 3.5887 1.4166 0.6107 7 6 2.0103 -1.2021 0.0005 8 1 3.0790 -1.2086 -0.1550 9 7 1.3400 -2.3797 0.1983 10 6 -0.0652 -2.5072 0.6258 11 6 -0.1577 -3.9093 1.2828 12 1 0.2046 -3.8825 2.3105 13 8 -1.4916 -4.4189 1.2254 14 6 0.7934 -4.7374 0.3791 15 1 0.2749 -5.0769 -0.5176 16 7 1.3490 -5.8750 1.1164 17 6 1.8112 -6.9502 0.4480 18 8 1.7677 -6.9759 -0.7638 19 6 2.3822 -8.1207 1.2063 20 7 2.8127 -9.1527 0.2598 21 6 2.0595 -10.2275 -0.1275 22 6 2.7484 -10.9775 -1.0019 23 6 4.0487 -10.3299 -1.1905 24 6 5.1767 -10.6232 -1.9595 25 6 6.2629 -9.7957 -1.9135 26 6 6.2541 -8.6647 -1.1085 27 6 5.1520 -8.3565 -0.3419 28 6 4.0356 -9.1861 -0.3719 29 6 1.9021 -3.7263 0.0188 30 1 -0.4851 0.8400 -0.0004 31 1 -0.3134 -1.7309 1.3496 32 1 -0.7305 -2.4485 -0.2356 33 1 -2.1223 -3.9331 1.7744 34 1 1.3840 -5.8544 2.0855 35 1 1.6203 -8.5304 1.8696 36 1 3.2371 -7.7895 1.7958 37 1 1.0590 -10.4406 0.2189 38 1 2.4098 -11.8881 -1.4739 39 1 5.1902 -11.5008 -2.5889 40 1 7.1352 -10.0233 -2.5081 41 1 7.1205 -8.0204 -1.0825 42 1 5.1547 -7.4740 0.2808 43 1 2.7573 -3.8623 0.6810 44 1 2.2098 -3.8670 -1.0173 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078197833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:09 Heat of formation + Delta-G solvation = 17.966681 kcal Electronic energy + Delta-G solvation = -27565.196646 eV Core-core repulsion = 23677.289536 eV Total energy + Delta-G solvation = -3887.907110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.46623 -39.68288 -37.93876 -36.94240 -35.18112 -34.16178 -33.05230 -31.80376 -30.54568 -28.97063 -28.60780 -27.50236 -26.44942 -24.40040 -22.76417 -21.71995 -21.18592 -20.76458 -20.16630 -19.99265 -17.68062 -17.40572 -16.96136 -16.77149 -16.54266 -15.68867 -15.45779 -15.13700 -14.85639 -14.52236 -14.14669 -13.93188 -13.82038 -13.62295 -13.28789 -13.15722 -12.91882 -12.74270 -12.52925 -12.29662 -12.02502 -11.66528 -11.62764 -11.59346 -11.32349 -11.01966 -10.88669 -10.88085 -10.24322 -10.08050 -10.03049 -9.89083 -9.65708 -9.39800 -8.92093 -8.71487 -8.19007 -7.70348 -6.94775 -5.85709 -3.20186 1.11774 1.60853 2.43955 2.54966 2.72844 3.25600 3.34150 3.39941 3.41787 3.92924 4.32845 4.47015 4.51158 4.55055 4.66698 4.72651 4.76862 4.99156 5.10230 5.15210 5.33988 5.39706 5.43895 5.49101 5.56504 5.60856 5.74269 5.76106 5.89176 5.97488 6.03559 6.05735 6.33379 6.44652 6.58907 6.61186 6.72686 6.74522 6.79235 7.13935 7.18277 7.19895 7.38192 7.51993 7.63909 7.98205 8.11350 8.21019 9.06051 9.67555 10.32133 11.27100 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.016238 B = 0.002823 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.949416 B = 9917.831493 C =11287.384496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.232 4.232 8 H 0.079 0.921 9 N -0.598 5.598 10 C 0.151 3.849 11 C 0.066 3.934 12 H 0.062 0.938 13 O -0.564 6.564 14 C 0.144 3.856 15 H 0.101 0.899 16 N -0.712 5.712 17 C 0.490 3.510 18 O -0.517 6.517 19 C 0.092 3.908 20 N -0.468 5.468 21 C 0.060 3.940 22 C -0.205 4.205 23 C -0.108 4.108 24 C -0.074 4.074 25 C -0.149 4.149 26 C -0.101 4.101 27 C -0.123 4.123 28 C 0.110 3.890 29 C 0.130 3.870 30 H 0.255 0.745 31 H 0.076 0.924 32 H 0.040 0.960 33 H 0.378 0.622 34 H 0.398 0.602 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.166 0.834 38 H 0.146 0.854 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.116 0.884 43 H 0.029 0.971 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.960 -20.416 6.039 21.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.361 4.361 8 H 0.097 0.903 9 N -0.326 5.326 10 C 0.025 3.975 11 C 0.006 3.994 12 H 0.080 0.920 13 O -0.369 6.369 14 C 0.039 3.961 15 H 0.119 0.881 16 N -0.364 5.364 17 C 0.273 3.727 18 O -0.391 6.391 19 C -0.035 4.035 20 N -0.151 5.151 21 C -0.064 4.064 22 C -0.230 4.230 23 C -0.113 4.113 24 C -0.093 4.093 25 C -0.168 4.168 26 C -0.121 4.121 27 C -0.144 4.144 28 C 0.004 3.996 29 C 0.003 3.997 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.225 0.775 34 H 0.233 0.767 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.184 0.816 38 H 0.164 0.836 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.141 0.859 42 H 0.134 0.866 43 H 0.047 0.953 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 5.022 -20.423 4.944 21.605 hybrid contribution 0.030 1.518 0.809 1.720 sum 5.052 -18.905 5.753 20.397 Atomic orbital electron populations 1.69925 1.05025 1.25455 1.56122 1.24854 0.95679 0.97977 1.01695 0.86082 0.78720 0.83155 0.77677 1.21433 1.21528 1.20498 1.19043 0.91242 0.82399 1.43371 0.90322 1.44271 1.09123 0.99785 1.79403 1.22039 0.86866 0.90568 0.98052 1.23630 0.81888 0.96269 0.97638 0.92020 1.86428 1.19155 1.59012 1.72315 1.22008 0.93715 0.84759 0.95595 0.88100 1.45945 1.62894 1.17421 1.10142 1.20873 0.78983 0.83934 0.88910 1.90800 1.54389 1.80405 1.13510 1.21592 1.02640 0.87975 0.91245 1.43359 1.12321 1.20923 1.38491 1.21759 0.97072 0.88147 0.99409 1.21617 0.93978 1.02849 1.04551 1.19188 0.95536 0.96338 1.00201 1.20230 0.91791 0.99321 0.97915 1.20596 0.98748 0.96095 1.01383 1.20783 0.97416 0.97342 0.96530 1.20035 0.92058 0.99293 1.02984 1.18185 0.87043 0.97555 0.96789 1.21617 0.93940 0.85405 0.98700 0.93520 0.90616 0.94210 0.77523 0.76749 0.86251 0.86748 0.81637 0.83642 0.86268 0.86240 0.85878 0.86597 0.95282 0.94850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.28 10.68 55.49 0.59 -25.68 16 2 C -0.01 -0.14 5.40 -17.43 -0.09 -0.24 16 3 Si 0.91 21.63 29.56 -169.99 -5.03 16.60 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.23 -6.40 10.24 -15.06 -0.15 -6.55 16 8 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 9 N -0.60 -15.03 3.40 -169.94 -0.58 -15.61 16 10 C 0.15 3.48 5.17 -2.42 -0.01 3.47 16 11 C 0.07 1.17 4.06 -24.47 -0.10 1.07 16 12 H 0.06 0.97 8.01 -51.93 -0.42 0.55 16 13 O -0.56 -9.11 13.48 -35.23 -0.47 -9.58 16 14 C 0.14 2.61 3.00 -66.10 -0.20 2.41 16 15 H 0.10 2.11 7.62 -51.93 -0.40 1.71 16 16 N -0.71 -9.69 5.12 -52.03 -0.27 -9.95 16 17 C 0.49 6.96 7.90 -10.99 -0.09 6.87 16 18 O -0.52 -10.03 16.11 5.55 0.09 -9.94 16 19 C 0.09 0.89 6.48 -5.19 -0.03 0.85 16 20 N -0.47 -5.73 2.27 -115.71 -0.26 -5.99 16 21 C 0.06 0.67 11.27 -16.73 -0.19 0.48 16 22 C -0.21 -2.39 11.08 -37.67 -0.42 -2.80 16 23 C -0.11 -1.45 6.37 -105.14 -0.67 -2.12 16 24 C -0.07 -0.87 10.05 -39.65 -0.40 -1.27 16 25 C -0.15 -1.66 9.97 -39.95 -0.40 -2.05 16 26 C -0.10 -1.18 10.01 -39.54 -0.40 -1.58 16 27 C -0.12 -1.61 10.00 -39.43 -0.39 -2.00 16 28 C 0.11 1.52 6.80 -83.99 -0.57 0.95 16 29 C 0.13 2.79 7.00 -3.06 -0.02 2.76 16 30 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.08 1.88 6.94 -51.93 -0.36 1.52 16 32 H 0.04 1.04 8.07 -51.93 -0.42 0.62 16 33 H 0.38 4.51 9.12 45.56 0.42 4.93 16 34 H 0.40 4.01 8.54 -40.82 -0.35 3.66 16 35 H 0.12 0.73 8.12 -51.93 -0.42 0.31 16 36 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 42 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 43 H 0.03 0.59 8.03 -51.93 -0.42 0.18 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 371.96 15.07 5.61 5.61 Total: -1.00 -36.08 371.96 -9.75 -45.82 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -5.29 Total: 8.48 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -4.13 Total: 0.25 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.51 Total: -57.24 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.39 Total: -19.52 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.08 -9.75 -45.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078197833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.787 kcal (2) G-P(sol) polarization free energy of solvation -36.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds