Wall clock time and date at job start Tue Mar 31 2020 06:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99777 * 2 1 4 4 H 1.48495 * 109.47123 * 274.13835 * 3 2 1 5 5 H 1.48498 * 109.47250 * 34.13925 * 3 2 1 6 6 H 1.48504 * 109.46949 * 154.13774 * 3 2 1 7 7 C 1.38811 * 120.00571 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00541 * 170.42729 * 7 2 1 9 9 N 1.36943 * 119.99640 * 350.42484 * 7 2 1 10 10 C 1.47422 * 125.64804 * 349.97837 * 9 7 2 11 11 C 1.55117 * 104.94238 * 203.96945 * 10 9 7 12 12 H 1.09002 * 110.93367 * 81.22433 * 11 10 9 13 13 O 1.42907 * 111.16222 * 205.13341 * 11 10 9 14 14 C 1.55149 * 101.48842 * 323.22523 * 11 10 9 15 15 H 1.09000 * 110.72302 * 276.83147 * 14 11 10 16 16 N 1.46507 * 110.72067 * 153.73200 * 14 11 10 17 17 C 1.34776 * 119.99976 * 157.44198 * 16 14 11 18 18 O 1.21288 * 120.00275 * 0.02562 * 17 16 14 19 19 C 1.50698 * 120.00054 * 180.02562 * 17 16 14 20 20 N 1.46502 * 109.47048 * 180.02562 * 19 17 16 21 21 C 1.36832 * 125.06112 * 264.97360 * 20 19 17 22 22 C 1.34234 * 109.92825 * 180.02562 * 21 20 19 23 23 C 1.46486 * 106.99940 * 359.97438 * 22 21 20 24 24 C 1.39631 * 134.03690 * 179.97438 * 23 22 21 25 25 C 1.36623 * 119.76612 * 180.02562 * 24 23 22 26 26 C 1.38826 * 120.52688 * 359.97438 * 25 24 23 27 27 C 1.37744 * 120.66769 * 0.02562 * 26 25 24 28 28 C 1.37685 * 125.06685 * 85.01680 * 20 19 17 29 29 C 1.47023 * 125.64777 * 169.94299 * 9 7 2 30 30 H 0.96996 * 120.00656 * 0.02562 * 1 2 3 31 31 H 1.09001 * 110.37070 * 322.93580 * 10 9 7 32 32 H 1.09005 * 110.36377 * 85.14867 * 10 9 7 33 33 H 0.96701 * 114.00258 * 292.17372 * 13 11 10 34 34 H 0.97000 * 120.00007 * 337.44789 * 16 14 11 35 35 H 1.09005 * 109.46956 * 60.00175 * 19 17 16 36 36 H 1.08992 * 109.47205 * 299.99949 * 19 17 16 37 37 H 1.08001 * 125.04003 * 0.03771 * 21 20 19 38 38 H 1.08000 * 126.50213 * 179.74369 * 22 21 20 39 39 H 1.08004 * 120.11365 * 0.07205 * 24 23 22 40 40 H 1.07999 * 119.73608 * 179.97438 * 25 24 23 41 41 H 1.08005 * 119.66555 * 179.97438 * 26 25 24 42 42 H 1.08007 * 120.11218 * 180.02562 * 27 26 25 43 43 H 1.09001 * 109.88199 * 59.55737 * 29 9 7 44 44 H 1.08995 * 110.01488 * 298.46517 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4101 2.0970 -1.3964 5 1 1.4940 2.6259 0.7857 6 1 3.5887 1.4166 0.6107 7 6 2.0103 -1.2021 0.0005 8 1 3.0790 -1.2086 -0.1550 9 7 1.3400 -2.3797 0.1983 10 6 -0.0652 -2.5072 0.6258 11 6 -0.1577 -3.9093 1.2828 12 1 0.2046 -3.8825 2.3105 13 8 -1.4916 -4.4189 1.2254 14 6 0.7934 -4.7374 0.3791 15 1 0.2749 -5.0769 -0.5176 16 7 1.3490 -5.8750 1.1164 17 6 1.8112 -6.9502 0.4480 18 8 1.7677 -6.9759 -0.7638 19 6 2.3822 -8.1207 1.2063 20 7 2.8127 -9.1527 0.2598 21 6 2.0595 -10.2275 -0.1275 22 6 2.7484 -10.9775 -1.0019 23 6 4.0487 -10.3299 -1.1905 24 6 5.1767 -10.6232 -1.9595 25 6 6.2629 -9.7957 -1.9135 26 6 6.2541 -8.6647 -1.1085 27 6 5.1520 -8.3565 -0.3419 28 6 4.0356 -9.1861 -0.3719 29 6 1.9021 -3.7263 0.0188 30 1 -0.4851 0.8400 -0.0004 31 1 -0.3134 -1.7309 1.3496 32 1 -0.7305 -2.4485 -0.2356 33 1 -2.1223 -3.9331 1.7744 34 1 1.3840 -5.8544 2.0855 35 1 1.6203 -8.5304 1.8696 36 1 3.2371 -7.7895 1.7958 37 1 1.0590 -10.4406 0.2189 38 1 2.4098 -11.8881 -1.4739 39 1 5.1902 -11.5008 -2.5889 40 1 7.1352 -10.0233 -2.5081 41 1 7.1205 -8.0204 -1.0825 42 1 5.1547 -7.4740 0.2808 43 1 2.7573 -3.8623 0.6810 44 1 2.2098 -3.8670 -1.0173 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078197833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:08 Heat of formation + Delta-G solvation = -8.234989 kcal Electronic energy + Delta-G solvation = -27566.332836 eV Core-core repulsion = 23677.289536 eV Total energy + Delta-G solvation = -3889.043300 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.33487 -40.94969 -39.40501 -37.82677 -36.72345 -35.63715 -34.03853 -33.55204 -31.49126 -30.31518 -29.75772 -29.02276 -27.68179 -26.19081 -23.65671 -22.80051 -22.48658 -22.14273 -21.63247 -20.97545 -19.17039 -18.65878 -18.33025 -18.01264 -17.37465 -17.24616 -16.52792 -16.28867 -16.25544 -15.80743 -15.59036 -15.22953 -14.85269 -14.79098 -14.68795 -14.40289 -14.07321 -14.02095 -13.84602 -13.50599 -13.25100 -13.18282 -13.05053 -12.81936 -12.76605 -12.50604 -12.47287 -12.11531 -11.94228 -11.74046 -11.57681 -11.30263 -10.92878 -10.77948 -10.53498 -10.25871 -9.07770 -8.98791 -8.56483 -7.95226 -5.33110 0.24069 0.70466 1.44533 1.46118 1.46809 1.54063 1.56899 1.91397 2.19670 2.44849 3.02208 3.02775 3.24804 3.54627 3.58331 3.75813 3.77607 3.88217 3.99229 4.01729 4.12294 4.15531 4.18149 4.30278 4.37545 4.54020 4.57637 4.60478 4.79043 4.80288 4.87967 4.95433 5.07743 5.18903 5.27568 5.36639 5.41001 5.58012 5.58330 5.71475 5.87081 5.89977 6.09133 6.29325 6.32444 6.50760 6.83645 6.98904 7.14325 7.63548 8.28014 9.15861 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.016238 B = 0.002823 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.949416 B = 9917.831493 C =11287.384496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.057 4.057 3 Si 0.981 3.019 4 H -0.290 1.290 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.252 4.252 8 H 0.080 0.920 9 N -0.617 5.617 10 C 0.155 3.845 11 C 0.094 3.906 12 H 0.098 0.902 13 O -0.567 6.567 14 C 0.159 3.841 15 H 0.069 0.931 16 N -0.696 5.696 17 C 0.490 3.510 18 O -0.575 6.575 19 C 0.098 3.902 20 N -0.475 5.475 21 C 0.057 3.943 22 C -0.223 4.223 23 C -0.137 4.137 24 C -0.086 4.086 25 C -0.155 4.155 26 C -0.111 4.111 27 C -0.144 4.144 28 C 0.082 3.918 29 C 0.132 3.868 30 H 0.252 0.748 31 H 0.055 0.945 32 H -0.002 1.002 33 H 0.398 0.602 34 H 0.421 0.579 35 H 0.166 0.834 36 H 0.142 0.858 37 H 0.199 0.801 38 H 0.164 0.836 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.120 0.880 43 H 0.046 0.954 44 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.542 -21.708 8.077 23.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.251 4.251 3 Si 0.808 3.192 4 H -0.217 1.217 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.381 4.381 8 H 0.097 0.903 9 N -0.345 5.345 10 C 0.029 3.971 11 C 0.034 3.966 12 H 0.115 0.885 13 O -0.375 6.375 14 C 0.052 3.948 15 H 0.088 0.912 16 N -0.349 5.349 17 C 0.276 3.724 18 O -0.453 6.453 19 C -0.027 4.027 20 N -0.158 5.158 21 C -0.067 4.067 22 C -0.247 4.247 23 C -0.141 4.141 24 C -0.104 4.104 25 C -0.174 4.174 26 C -0.130 4.130 27 C -0.165 4.165 28 C -0.024 4.024 29 C 0.005 3.995 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.016 0.984 33 H 0.249 0.751 34 H 0.259 0.741 35 H 0.183 0.817 36 H 0.159 0.841 37 H 0.216 0.784 38 H 0.182 0.818 39 H 0.156 0.844 40 H 0.162 0.838 41 H 0.160 0.840 42 H 0.138 0.862 43 H 0.064 0.936 44 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 5.605 -21.745 7.045 23.535 hybrid contribution -0.156 1.889 0.093 1.898 sum 5.448 -19.856 7.137 21.792 Atomic orbital electron populations 1.70118 1.06364 1.25901 1.56952 1.25691 0.96568 1.01170 1.01670 0.85045 0.77981 0.78816 0.77317 1.21675 1.21355 1.19092 1.19401 0.91689 0.83732 1.43276 0.90263 1.44545 1.09897 1.00570 1.79458 1.21882 0.85231 0.93724 0.96281 1.23237 0.82836 0.92131 0.98417 0.88468 1.86400 1.18876 1.58953 1.73245 1.21445 0.92602 0.85407 0.95318 0.91247 1.45673 1.62229 1.15920 1.11066 1.21766 0.77583 0.84655 0.88424 1.90787 1.56606 1.81533 1.16357 1.21849 1.04703 0.85697 0.90452 1.43585 1.11927 1.21474 1.38817 1.22361 0.98060 0.87477 0.98807 1.21977 0.93606 1.03885 1.05237 1.19670 0.96775 0.96927 1.00757 1.20578 0.91684 1.00176 0.98003 1.20946 0.99462 0.95681 1.01273 1.21128 0.97779 0.97862 0.96224 1.20268 0.92625 0.99710 1.03878 1.18511 0.88028 0.98122 0.97692 1.21670 0.95564 0.84855 0.97387 0.93912 0.92713 0.98411 0.75117 0.74052 0.81652 0.84057 0.78435 0.81811 0.84384 0.83793 0.84023 0.86189 0.93622 0.97834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.46 10.68 21.65 0.23 -55.23 16 2 C -0.06 -3.19 5.40 84.86 0.46 -2.73 16 3 Si 0.98 44.78 29.56 68.60 2.03 46.81 16 4 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.25 -14.12 10.24 84.03 0.86 -13.26 16 8 H 0.08 4.29 7.85 -2.91 -0.02 4.27 16 9 N -0.62 -31.67 3.40 -691.58 -2.35 -34.02 16 10 C 0.15 7.32 5.17 86.93 0.45 7.77 16 11 C 0.09 3.19 4.06 32.06 0.13 3.32 16 12 H 0.10 2.68 8.01 -2.39 -0.02 2.66 16 13 O -0.57 -17.22 13.48 -148.98 -2.01 -19.22 16 14 C 0.16 5.69 3.00 46.18 0.14 5.82 16 15 H 0.07 2.97 7.62 -2.39 -0.02 2.95 16 16 N -0.70 -17.28 5.12 -436.92 -2.24 -19.52 16 17 C 0.49 13.05 7.90 87.66 0.69 13.74 16 18 O -0.57 -22.41 16.11 -3.05 -0.05 -22.46 16 19 C 0.10 1.58 6.48 85.63 0.56 2.13 16 20 N -0.47 -10.76 2.27 -520.01 -1.18 -11.94 16 21 C 0.06 1.15 11.27 83.00 0.94 2.08 16 22 C -0.22 -4.95 11.08 23.51 0.26 -4.69 16 23 C -0.14 -3.61 6.37 -20.20 -0.13 -3.74 16 24 C -0.09 -1.98 10.05 22.23 0.22 -1.76 16 25 C -0.15 -3.31 9.97 22.03 0.22 -3.09 16 26 C -0.11 -2.53 10.01 22.29 0.22 -2.30 16 27 C -0.14 -3.72 10.00 22.37 0.22 -3.50 16 28 C 0.08 2.22 6.80 39.03 0.27 2.49 16 29 C 0.13 5.71 7.00 86.73 0.61 6.32 16 30 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 31 H 0.05 2.78 6.94 -2.39 -0.02 2.77 16 32 H 0.00 -0.12 8.07 -2.38 -0.02 -0.14 16 33 H 0.40 8.59 9.12 -74.06 -0.68 7.91 16 34 H 0.42 6.73 8.54 -92.71 -0.79 5.94 16 35 H 0.17 1.16 8.12 -2.38 -0.02 1.14 16 36 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.20 2.44 8.06 -2.91 -0.02 2.42 16 38 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 39 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 40 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 41 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 42 H 0.12 2.80 8.06 -2.91 -0.02 2.78 16 43 H 0.05 1.83 8.03 -2.39 -0.02 1.81 16 44 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 Total: -1.00 -83.07 371.96 0.12 -82.95 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -0.43 Total: 24.02 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 6.11 Total: 8.61 kcal Atomic # 7 Polarization: -115.17 SS G_CDS: -5.53 Total: -120.70 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -2.06 Total: -41.69 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -83.07 0.12 -82.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078197833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.712 kcal (2) G-P(sol) polarization free energy of solvation -83.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds