Wall clock time and date at job start Tue Mar 31 2020 04:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46506 * 109.46704 * 2 1 4 4 C 1.34776 * 120.00189 * 269.99519 * 3 2 1 5 5 O 1.21285 * 120.00034 * 185.37450 * 4 3 2 6 6 C 1.50705 * 119.99909 * 5.37956 * 4 3 2 7 7 S 1.81002 * 109.46976 * 179.97438 * 6 4 3 8 8 C 1.76205 * 99.99712 * 180.02562 * 7 6 4 9 9 H 1.07994 * 119.99970 * 359.97438 * 8 7 6 10 10 C 1.38795 * 119.99799 * 180.02562 * 8 7 6 11 11 N 1.31624 * 120.00165 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99969 * 359.97438 * 10 8 7 13 13 H 1.48507 * 109.47228 * 90.00216 * 12 10 8 14 14 H 1.48499 * 109.47023 * 209.99957 * 12 10 8 15 15 H 1.48498 * 109.47521 * 330.00293 * 12 10 8 16 16 C 1.46496 * 119.99891 * 90.00695 * 3 2 1 17 17 C 1.53496 * 114.21175 * 65.63159 * 16 3 2 18 18 N 1.47068 * 87.98765 * 220.15086 * 17 16 3 19 19 C 1.34777 * 136.05758 * 207.08497 * 18 17 16 20 20 O 1.21283 * 119.99735 * 0.02562 * 19 18 17 21 21 C 1.50694 * 119.99926 * 180.02562 * 19 18 17 22 22 C 1.50704 * 109.47090 * 180.02562 * 21 19 18 23 23 N 1.34775 * 120.00348 * 180.02562 * 22 21 19 24 24 O 1.21285 * 119.99767 * 0.02562 * 22 21 19 25 25 C 1.47063 * 87.88466 * 27.34337 * 18 17 16 26 26 H 1.09006 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47603 * 299.99900 * 1 2 3 28 28 H 1.09001 * 109.47629 * 60.00027 * 1 2 3 29 29 H 1.09000 * 109.47604 * 240.00649 * 2 1 3 30 30 H 1.09001 * 109.47629 * 119.99973 * 2 1 3 31 31 H 1.08998 * 109.46873 * 300.00032 * 6 4 3 32 32 H 1.09003 * 109.46968 * 59.99818 * 6 4 3 33 33 H 0.97001 * 120.00933 * 179.97438 * 11 10 8 34 34 H 1.09003 * 113.28218 * 198.70544 * 16 3 2 35 35 H 1.09003 * 113.46473 * 105.36810 * 17 16 3 36 36 H 1.08996 * 113.52204 * 334.94494 * 17 16 3 37 37 H 1.09002 * 109.47322 * 299.99881 * 21 19 18 38 38 H 1.08998 * 109.47219 * 60.00778 * 21 19 18 39 39 H 0.97005 * 119.99742 * 359.97438 * 23 22 21 40 40 H 0.96996 * 120.00413 * 179.97438 * 23 22 21 41 41 H 1.09000 * 113.46929 * 87.43598 * 25 18 17 42 42 H 1.09002 * 113.47002 * 217.87576 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2429 2.0167 -1.1672 5 8 2.7385 3.1236 -1.1694 6 6 1.8782 1.3517 -2.4695 7 16 2.2984 2.4495 -3.8459 8 6 1.7808 1.4511 -5.2024 9 1 1.3537 0.4756 -5.0229 10 6 1.9231 1.9180 -6.5017 11 7 1.5370 1.1721 -7.5151 12 14 2.6626 3.6050 -6.8122 13 1 4.1350 3.4806 -6.9601 14 1 2.0868 4.1766 -8.0559 15 1 2.3541 4.4992 -5.6674 16 6 2.2624 2.0718 1.2687 17 6 3.4030 1.4719 2.1025 18 7 2.5769 1.6956 3.2985 19 6 2.8050 1.9095 4.6095 20 8 3.9425 1.9489 5.0284 21 6 1.6469 2.0995 5.5546 22 6 2.1690 2.3204 6.9510 23 7 1.3081 2.5143 7.9696 24 8 3.3640 2.3236 7.1580 25 6 1.3920 1.5766 2.4355 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.4309 0.4174 -2.5676 32 1 0.8082 1.1442 -2.4843 33 1 1.6361 1.4984 -8.4232 34 1 2.3052 3.1563 1.1677 35 1 4.3139 2.0704 2.0860 36 1 3.5874 0.4183 1.8931 37 1 1.0629 2.9660 5.2442 38 1 1.0154 1.2112 5.5389 39 1 0.3523 2.5121 7.8039 40 1 1.6441 2.6561 8.8684 41 1 1.0453 0.5504 2.3132 42 1 0.5895 2.2641 2.7027 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079342155.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:42 Heat of formation + Delta-G solvation = -57.046137 kcal Electronic energy + Delta-G solvation = -25387.250290 eV Core-core repulsion = 21495.701236 eV Total energy + Delta-G solvation = -3891.549053 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.23272 -40.12050 -38.97636 -37.65335 -35.49366 -34.08174 -32.47337 -31.67042 -30.60457 -29.87307 -28.05114 -26.36129 -25.65002 -23.78824 -22.66195 -21.28728 -19.39542 -19.28364 -17.94791 -17.78002 -17.68916 -17.34573 -16.49972 -16.35345 -16.08561 -15.68288 -15.24929 -15.03858 -14.66309 -14.14170 -14.07621 -13.93506 -13.67596 -13.41797 -13.37158 -13.02419 -12.91237 -12.82560 -12.69061 -12.34712 -12.20087 -11.78888 -11.38437 -11.29739 -11.19991 -11.02250 -10.67145 -10.56121 -10.08625 -9.90987 -9.82881 -9.58921 -9.05639 -9.03410 -8.79329 -8.53633 -6.96341 -6.32187 -4.04529 2.13594 2.19034 2.37424 2.67954 2.76241 3.06561 3.21651 3.31240 3.47946 3.54399 3.87052 3.99324 4.29857 4.36240 4.49545 4.53912 4.63470 4.66529 4.71467 4.79070 4.94859 4.98944 5.00918 5.07199 5.11540 5.17175 5.37855 5.42546 5.48645 5.59037 5.70019 5.79755 5.86932 6.07774 6.34761 6.40765 6.84763 7.23106 7.37257 7.79564 7.90607 7.95920 8.29019 8.37842 9.13995 10.76866 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.032230 B = 0.002179 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.557627 B =12848.582080 C =13290.479164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.100 3.900 3 N -0.608 5.608 4 C 0.536 3.464 5 O -0.511 6.511 6 C -0.121 4.121 7 S -0.143 6.143 8 C -0.521 4.521 9 H 0.088 0.912 10 C 0.096 3.904 11 N -0.879 5.879 12 Si 0.856 3.144 13 H -0.267 1.267 14 H -0.274 1.274 15 H -0.235 1.235 16 C 0.119 3.881 17 C 0.091 3.909 18 N -0.648 5.648 19 C 0.544 3.456 20 O -0.491 6.491 21 C -0.160 4.160 22 C 0.515 3.485 23 N -0.860 5.860 24 O -0.497 6.497 25 C 0.084 3.916 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.271 0.729 34 H 0.133 0.867 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.400 0.600 40 H 0.404 0.596 41 H 0.095 0.905 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.065 -2.621 26.742 28.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.023 4.023 3 N -0.343 5.343 4 C 0.324 3.676 5 O -0.385 6.385 6 C -0.272 4.272 7 S 0.083 5.917 8 C -0.669 4.669 9 H 0.106 0.894 10 C -0.113 4.113 11 N -0.516 5.516 12 Si 0.681 3.319 13 H -0.192 1.192 14 H -0.199 1.199 15 H -0.159 1.159 16 C 0.014 3.986 17 C -0.033 4.033 18 N -0.387 5.387 19 C 0.331 3.669 20 O -0.363 6.363 21 C -0.202 4.202 22 C 0.297 3.703 23 N -0.426 5.426 24 O -0.368 6.368 25 C -0.040 4.040 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.081 0.919 34 H 0.151 0.849 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.228 0.772 40 H 0.235 0.765 41 H 0.113 0.887 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.815 -0.966 26.951 27.588 hybrid contribution -0.957 -0.849 -0.160 1.289 sum -6.772 -1.815 26.791 27.693 Atomic orbital electron populations 1.22327 0.95490 1.02647 1.03032 1.21633 0.94828 0.82154 1.03697 1.47852 1.67581 1.14267 1.04638 1.20373 0.77015 0.85667 0.84500 1.90715 1.41345 1.19749 1.86662 1.23360 1.05200 1.03639 0.94970 1.84839 1.83418 1.25652 0.97797 1.22286 1.47988 1.05586 0.91005 0.89359 1.24708 0.93987 0.97691 0.94898 1.69929 1.45421 1.37201 0.99029 0.86743 0.80433 0.84747 0.79973 1.19195 1.19949 1.15934 1.22749 0.94824 0.99313 0.81757 1.23501 0.97320 1.01757 0.80749 1.49326 1.11328 1.72423 1.05625 1.19410 0.90280 0.77458 0.79707 1.90899 1.22968 1.48120 1.74264 1.21509 0.99136 1.06435 0.93169 1.19971 0.86825 0.77029 0.86475 1.43840 1.10230 1.77322 1.11169 1.90934 1.14931 1.47025 1.83929 1.23678 0.90591 1.02479 0.87210 0.91243 0.92284 0.91490 0.89313 0.90365 0.88454 0.88235 0.91916 0.84910 0.89626 0.89440 0.85902 0.86016 0.77224 0.76533 0.88671 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 9.93 37.15 0.37 -0.85 16 2 C 0.10 0.79 5.05 -4.04 -0.02 0.77 16 3 N -0.61 -6.74 2.70 -165.72 -0.45 -7.19 16 4 C 0.54 8.69 7.68 -10.98 -0.08 8.60 16 5 O -0.51 -10.26 15.46 5.55 0.09 -10.18 16 6 C -0.12 -2.17 4.84 36.01 0.17 -1.99 16 7 S -0.14 -3.49 18.55 -107.50 -1.99 -5.49 16 8 C -0.52 -14.52 10.04 30.94 0.31 -14.20 16 9 H 0.09 2.55 8.03 -52.49 -0.42 2.13 16 10 C 0.10 2.74 5.50 -17.43 -0.10 2.65 16 11 N -0.88 -25.96 13.97 55.49 0.78 -25.18 16 12 Si 0.86 21.36 27.74 -169.99 -4.71 16.65 16 13 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.24 -5.85 6.74 56.52 0.38 -5.47 16 16 C 0.12 1.16 4.49 -67.67 -0.30 0.85 16 17 C 0.09 0.90 8.19 -8.51 -0.07 0.83 16 18 N -0.65 -5.94 3.69 -185.07 -0.68 -6.62 16 19 C 0.54 6.02 8.07 -10.99 -0.09 5.93 16 20 O -0.49 -8.19 14.95 -18.96 -0.28 -8.47 16 21 C -0.16 -0.94 6.01 -29.04 -0.17 -1.12 16 22 C 0.51 4.43 8.09 -10.98 -0.09 4.34 16 23 N -0.86 -3.28 8.87 31.22 0.28 -3.00 16 24 O -0.50 -7.39 15.02 -18.96 -0.28 -7.68 16 25 C 0.08 0.52 6.97 -8.37 -0.06 0.47 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.33 6.44 -51.93 -0.33 -0.01 16 28 H 0.07 0.60 6.92 -51.93 -0.36 0.24 16 29 H 0.09 0.76 6.48 -51.93 -0.34 0.42 16 30 H 0.08 0.45 6.22 -51.93 -0.32 0.13 16 31 H 0.10 1.62 7.24 -51.92 -0.38 1.24 16 32 H 0.10 1.64 6.92 -51.91 -0.36 1.28 16 33 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.13 1.52 7.44 -51.93 -0.39 1.13 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 0.78 7.37 -51.93 -0.38 0.39 16 37 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.40 0.08 8.83 -40.82 -0.36 -0.28 16 40 H 0.40 1.39 8.93 -40.82 -0.36 1.02 16 41 H 0.10 0.44 5.33 -51.93 -0.28 0.16 16 42 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 361.95 15.07 5.45 5.45 Total: -1.00 -40.51 361.95 -7.50 -48.01 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -5.55 Total: -2.58 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -0.13 Total: 6.28 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -0.08 Total: -41.99 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.48 Total: -26.32 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.71 Total: 16.65 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -40.51 -7.50 -48.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079342155.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.041 kcal (2) G-P(sol) polarization free energy of solvation -40.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds