Wall clock time and date at job start Tue Mar 31 2020 04:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46506 * 109.46704 * 2 1 4 4 C 1.34776 * 120.00189 * 269.99519 * 3 2 1 5 5 O 1.21285 * 120.00034 * 185.37450 * 4 3 2 6 6 C 1.50705 * 119.99909 * 5.37956 * 4 3 2 7 7 S 1.81002 * 109.46976 * 179.97438 * 6 4 3 8 8 C 1.76205 * 99.99712 * 180.02562 * 7 6 4 9 9 H 1.07994 * 119.99970 * 359.97438 * 8 7 6 10 10 C 1.38795 * 119.99799 * 180.02562 * 8 7 6 11 11 N 1.31624 * 120.00165 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99969 * 359.97438 * 10 8 7 13 13 H 1.48507 * 109.47228 * 90.00216 * 12 10 8 14 14 H 1.48499 * 109.47023 * 209.99957 * 12 10 8 15 15 H 1.48498 * 109.47521 * 330.00293 * 12 10 8 16 16 C 1.46496 * 119.99891 * 90.00695 * 3 2 1 17 17 C 1.53496 * 114.21175 * 65.63159 * 16 3 2 18 18 N 1.47068 * 87.98765 * 220.15086 * 17 16 3 19 19 C 1.34777 * 136.05758 * 207.08497 * 18 17 16 20 20 O 1.21283 * 119.99735 * 0.02562 * 19 18 17 21 21 C 1.50694 * 119.99926 * 180.02562 * 19 18 17 22 22 C 1.50704 * 109.47090 * 180.02562 * 21 19 18 23 23 N 1.34775 * 120.00348 * 180.02562 * 22 21 19 24 24 O 1.21285 * 119.99767 * 0.02562 * 22 21 19 25 25 C 1.47063 * 87.88466 * 27.34337 * 18 17 16 26 26 H 1.09006 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47603 * 299.99900 * 1 2 3 28 28 H 1.09001 * 109.47629 * 60.00027 * 1 2 3 29 29 H 1.09000 * 109.47604 * 240.00649 * 2 1 3 30 30 H 1.09001 * 109.47629 * 119.99973 * 2 1 3 31 31 H 1.08998 * 109.46873 * 300.00032 * 6 4 3 32 32 H 1.09003 * 109.46968 * 59.99818 * 6 4 3 33 33 H 0.97001 * 120.00933 * 179.97438 * 11 10 8 34 34 H 1.09003 * 113.28218 * 198.70544 * 16 3 2 35 35 H 1.09003 * 113.46473 * 105.36810 * 17 16 3 36 36 H 1.08996 * 113.52204 * 334.94494 * 17 16 3 37 37 H 1.09002 * 109.47322 * 299.99881 * 21 19 18 38 38 H 1.08998 * 109.47219 * 60.00778 * 21 19 18 39 39 H 0.97005 * 119.99742 * 359.97438 * 23 22 21 40 40 H 0.96996 * 120.00413 * 179.97438 * 23 22 21 41 41 H 1.09000 * 113.46929 * 87.43598 * 25 18 17 42 42 H 1.09002 * 113.47002 * 217.87576 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2429 2.0167 -1.1672 5 8 2.7385 3.1236 -1.1694 6 6 1.8782 1.3517 -2.4695 7 16 2.2984 2.4495 -3.8459 8 6 1.7808 1.4511 -5.2024 9 1 1.3537 0.4756 -5.0229 10 6 1.9231 1.9180 -6.5017 11 7 1.5370 1.1721 -7.5151 12 14 2.6626 3.6050 -6.8122 13 1 4.1350 3.4806 -6.9601 14 1 2.0868 4.1766 -8.0559 15 1 2.3541 4.4992 -5.6674 16 6 2.2624 2.0718 1.2687 17 6 3.4030 1.4719 2.1025 18 7 2.5769 1.6956 3.2985 19 6 2.8050 1.9095 4.6095 20 8 3.9425 1.9489 5.0284 21 6 1.6469 2.0995 5.5546 22 6 2.1690 2.3204 6.9510 23 7 1.3081 2.5143 7.9696 24 8 3.3640 2.3236 7.1580 25 6 1.3920 1.5766 2.4355 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.4309 0.4174 -2.5676 32 1 0.8082 1.1442 -2.4843 33 1 1.6361 1.4984 -8.4232 34 1 2.3052 3.1563 1.1677 35 1 4.3139 2.0704 2.0860 36 1 3.5874 0.4183 1.8931 37 1 1.0629 2.9660 5.2442 38 1 1.0154 1.2112 5.5389 39 1 0.3523 2.5121 7.8039 40 1 1.6441 2.6561 8.8684 41 1 1.0453 0.5504 2.3132 42 1 0.5895 2.2641 2.7027 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079342155.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:41 Heat of formation + Delta-G solvation = -90.152693 kcal Electronic energy + Delta-G solvation = -25388.685898 eV Core-core repulsion = 21495.701236 eV Total energy + Delta-G solvation = -3892.984661 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.04724 -40.93938 -39.94631 -38.59024 -36.46189 -34.65486 -34.65072 -32.39568 -31.30257 -31.06689 -28.93215 -27.81879 -27.02429 -24.47007 -23.58127 -21.96155 -20.45199 -20.00053 -19.56161 -18.66392 -18.34498 -18.20957 -17.51813 -17.09769 -17.00762 -16.83564 -16.52278 -16.27327 -16.03978 -15.27675 -14.97159 -14.85417 -14.76657 -14.63148 -14.32393 -14.22103 -13.79704 -13.55042 -13.49547 -13.32173 -13.27828 -13.01977 -12.95361 -12.62582 -12.48416 -12.06629 -11.87844 -11.85306 -11.32033 -11.15474 -10.97001 -10.62340 -10.58949 -10.49013 -9.86793 -9.70029 -8.97583 -8.49734 -6.20026 0.97754 1.32430 1.37835 1.48694 1.50365 1.53886 1.65397 1.71153 2.15285 2.26091 2.68473 2.71783 2.88748 3.24197 3.29264 3.58654 3.76911 4.03925 4.04994 4.06200 4.18407 4.33017 4.36364 4.40643 4.43232 4.47978 4.51134 4.58358 4.66405 4.75712 4.85489 5.01379 5.12302 5.48017 5.56970 5.72798 5.95141 6.13724 6.20160 6.51292 6.65154 6.95973 7.07370 7.10214 7.45979 8.62284 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.032230 B = 0.002179 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.557627 B =12848.582080 C =13290.479164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.090 3.910 3 N -0.589 5.589 4 C 0.538 3.462 5 O -0.559 6.559 6 C -0.105 4.105 7 S -0.183 6.183 8 C -0.524 4.524 9 H 0.065 0.935 10 C 0.046 3.954 11 N -0.916 5.916 12 Si 0.912 3.088 13 H -0.265 1.265 14 H -0.260 1.260 15 H -0.237 1.237 16 C 0.111 3.889 17 C 0.083 3.917 18 N -0.646 5.646 19 C 0.534 3.466 20 O -0.561 6.561 21 C -0.146 4.146 22 C 0.507 3.493 23 N -0.834 5.834 24 O -0.572 6.572 25 C 0.104 3.896 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.042 0.958 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.276 0.724 34 H 0.112 0.888 35 H 0.055 0.945 36 H 0.103 0.897 37 H 0.162 0.838 38 H 0.167 0.833 39 H 0.421 0.579 40 H 0.407 0.593 41 H 0.125 0.875 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.813 -3.275 28.757 30.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.032 4.032 3 N -0.322 5.322 4 C 0.326 3.674 5 O -0.437 6.437 6 C -0.255 4.255 7 S 0.044 5.956 8 C -0.672 4.672 9 H 0.083 0.917 10 C -0.159 4.159 11 N -0.554 5.554 12 Si 0.734 3.266 13 H -0.190 1.190 14 H -0.185 1.185 15 H -0.161 1.161 16 C 0.006 3.994 17 C -0.041 4.041 18 N -0.383 5.383 19 C 0.324 3.676 20 O -0.437 6.437 21 C -0.188 4.188 22 C 0.291 3.709 23 N -0.400 5.400 24 O -0.450 6.450 25 C -0.018 4.018 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.179 0.821 38 H 0.185 0.815 39 H 0.253 0.747 40 H 0.238 0.762 41 H 0.143 0.857 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.690 -1.661 28.995 30.314 hybrid contribution -0.165 -0.772 -0.653 1.024 sum -8.855 -2.433 28.342 29.793 Atomic orbital electron populations 1.22311 0.94016 1.03916 1.02926 1.21993 0.96004 0.80038 1.05118 1.47753 1.65732 1.15228 1.03517 1.20040 0.76970 0.85095 0.85285 1.90703 1.43911 1.21757 1.87327 1.23329 1.06415 1.02490 0.93291 1.84791 1.83721 1.27619 0.99471 1.22430 1.47193 1.05071 0.92489 0.91677 1.25520 0.94520 1.00975 0.94904 1.70004 1.46799 1.38937 0.99621 0.85906 0.79686 0.80864 0.80155 1.19010 1.18468 1.16054 1.22774 0.96570 0.98271 0.81798 1.23541 0.96602 1.02147 0.81856 1.49360 1.12340 1.71435 1.05163 1.20389 0.90839 0.76042 0.80351 1.90881 1.26048 1.51210 1.75561 1.21584 0.97307 1.10038 0.89829 1.20543 0.86195 0.75983 0.88217 1.43655 1.11004 1.74945 1.10434 1.90919 1.18178 1.50775 1.85128 1.23798 0.89676 1.04809 0.83481 0.89305 0.90088 0.93919 0.89962 0.87080 0.87045 0.86578 0.91441 0.87027 0.92592 0.87919 0.82072 0.81527 0.74666 0.76228 0.85720 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 9.93 71.98 0.71 -0.91 16 2 C 0.09 1.08 5.05 86.38 0.44 1.52 16 3 N -0.59 -11.72 2.70 -796.62 -2.15 -13.87 16 4 C 0.54 17.00 7.68 87.66 0.67 17.67 16 5 O -0.56 -22.67 15.46 -3.05 -0.05 -22.71 16 6 C -0.10 -3.66 4.84 71.24 0.34 -3.32 16 7 S -0.18 -8.94 18.55 -56.49 -1.05 -9.99 16 8 C -0.52 -29.62 10.04 67.95 0.68 -28.93 16 9 H 0.07 3.85 8.03 -2.91 -0.02 3.83 16 10 C 0.05 2.66 5.50 84.86 0.47 3.13 16 11 N -0.92 -54.70 13.97 21.65 0.30 -54.40 16 12 Si 0.91 44.42 27.74 68.60 1.90 46.32 16 13 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 14 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 15 H -0.24 -11.50 6.74 99.48 0.67 -10.83 16 16 C 0.11 1.92 4.49 45.55 0.20 2.12 16 17 C 0.08 1.57 8.19 83.18 0.68 2.25 16 18 N -0.65 -10.16 3.69 -857.84 -3.16 -13.32 16 19 C 0.53 10.96 8.07 87.66 0.71 11.66 16 20 O -0.56 -19.34 14.95 20.40 0.31 -19.04 16 21 C -0.15 -1.15 6.01 29.10 0.18 -0.97 16 22 C 0.51 7.84 8.09 87.66 0.71 8.55 16 23 N -0.83 -4.05 8.87 -173.53 -1.54 -5.59 16 24 O -0.57 -17.54 15.02 20.40 0.31 -17.24 16 25 C 0.10 0.78 6.97 83.27 0.58 1.36 16 26 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.08 0.42 6.44 -2.39 -0.02 0.40 16 28 H 0.04 0.64 6.92 -2.39 -0.02 0.62 16 29 H 0.08 1.16 6.48 -2.39 -0.02 1.14 16 30 H 0.11 0.70 6.22 -2.39 -0.01 0.68 16 31 H 0.11 3.59 7.24 -2.40 -0.02 3.57 16 32 H 0.12 3.69 6.92 -2.39 -0.02 3.68 16 33 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 34 H 0.11 2.49 7.44 -2.39 -0.02 2.47 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.10 1.61 7.37 -2.39 -0.02 1.59 16 37 H 0.16 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.17 -0.17 8.14 -2.39 -0.02 -0.19 16 39 H 0.42 -1.63 8.83 -92.70 -0.82 -2.45 16 40 H 0.41 2.03 8.93 -92.71 -0.83 1.20 16 41 H 0.13 0.30 5.33 -2.39 -0.01 0.29 16 42 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 Total: -1.00 -96.91 361.95 0.64 -96.26 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: -0.60 Total: -0.55 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 6.38 Total: 14.12 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -6.55 Total: -87.18 kcal Atomic # 8 Polarization: -59.55 SS G_CDS: 0.56 Total: -58.99 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.90 Total: 46.32 kcal Atomic # 16 Polarization: -8.94 SS G_CDS: -1.05 Total: -9.99 kcal Total: -96.91 0.64 -96.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079342155.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.111 kcal (2) G-P(sol) polarization free energy of solvation -96.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds