Wall clock time and date at job start Tue Mar 31 2020 04:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47101 * 2 1 4 4 C 1.34774 * 119.99953 * 269.99905 * 3 2 1 5 5 O 1.21287 * 119.99586 * 185.37272 * 4 3 2 6 6 C 1.50699 * 120.00316 * 5.37571 * 4 3 2 7 7 C 1.50695 * 109.47193 * 180.02562 * 6 4 3 8 8 N 1.34778 * 119.99797 * 180.02562 * 7 6 4 9 9 O 1.21284 * 120.00088 * 359.97438 * 7 6 4 10 10 C 1.46508 * 119.99847 * 89.99986 * 3 2 1 11 11 C 1.53491 * 114.20556 * 65.64017 * 10 3 2 12 12 N 1.47069 * 87.98357 * 220.14953 * 11 10 3 13 13 C 1.34779 * 136.05315 * 207.08846 * 12 11 10 14 14 O 1.21281 * 120.00388 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99873 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.47434 * 179.97438 * 15 13 12 17 17 C 1.76200 * 100.00086 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00028 * 359.97438 * 17 16 15 19 19 C 1.38795 * 119.99719 * 179.72844 * 17 16 15 20 20 N 1.31627 * 120.00186 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00022 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46906 * 59.99702 * 21 19 17 23 23 H 1.48490 * 109.47193 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46566 * 299.99935 * 21 19 17 25 25 C 1.47057 * 87.88679 * 27.34429 * 12 11 10 26 26 H 1.08998 * 109.46884 * 300.00327 * 1 2 3 27 27 H 1.09000 * 109.46871 * 60.00049 * 1 2 3 28 28 H 1.08998 * 109.47286 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47043 * 240.00187 * 2 1 3 30 30 H 1.09000 * 109.46871 * 119.99951 * 2 1 3 31 31 H 1.09002 * 109.46494 * 300.00112 * 6 4 3 32 32 H 1.09001 * 109.46773 * 59.99860 * 6 4 3 33 33 H 0.96999 * 120.00098 * 359.97438 * 8 7 6 34 34 H 0.97001 * 119.99824 * 180.02562 * 8 7 6 35 35 H 1.09000 * 113.27891 * 198.70701 * 10 3 2 36 36 H 1.08999 * 113.47047 * 105.36827 * 11 10 3 37 37 H 1.09000 * 113.52064 * 334.93485 * 11 10 3 38 38 H 1.09008 * 109.46904 * 59.99839 * 15 13 12 39 39 H 1.08995 * 109.47375 * 300.00175 * 15 13 12 40 40 H 0.97008 * 120.00139 * 180.02562 * 20 19 17 41 41 H 1.09000 * 113.47010 * 87.43772 * 25 12 11 42 42 H 1.09000 * 113.46644 * 217.88393 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 -1.1672 5 8 2.7387 3.1235 -1.1694 6 6 1.8783 1.3516 -2.4694 7 6 2.2293 2.2651 -3.6154 8 7 1.9900 1.8773 -4.8839 9 8 2.7263 3.3495 -3.3963 10 6 2.2626 2.0718 1.2688 11 6 3.4031 1.4719 2.1025 12 7 2.5769 1.6955 3.2985 13 6 2.8051 1.9094 4.6095 14 8 3.9426 1.9481 5.0287 15 6 1.6470 2.1007 5.5545 16 16 2.2740 2.3642 7.2319 17 6 0.7529 2.5522 8.1011 18 1 -0.1846 2.4895 7.5687 19 6 0.7595 2.7757 9.4710 20 7 1.9021 2.8468 10.1207 21 14 -0.8530 2.9757 10.3925 22 1 -1.6698 1.7458 10.2336 23 1 -0.5749 3.2019 11.8335 24 1 -1.5963 4.1380 9.8429 25 6 1.3921 1.5766 2.4355 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.4310 0.4173 -2.5675 32 1 0.8083 1.1441 -2.4842 33 1 1.5922 1.0102 -5.0591 34 1 2.2163 2.4651 -5.6216 35 1 2.3053 3.1563 1.1677 36 1 4.3140 2.0703 2.0862 37 1 3.5874 0.4182 1.8931 38 1 1.0147 1.2128 5.5387 39 1 1.0638 2.9675 5.2439 40 1 1.9067 3.0026 11.0782 41 1 1.0454 0.5504 2.3133 42 1 0.5897 2.2642 2.7027 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079535566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:46 Heat of formation + Delta-G solvation = -56.452973 kcal Electronic energy + Delta-G solvation = -25355.784031 eV Core-core repulsion = 21464.260699 eV Total energy + Delta-G solvation = -3891.523332 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.22928 -40.10449 -38.77752 -37.52179 -35.72654 -34.04267 -32.43726 -31.41272 -30.86735 -29.99055 -27.68328 -26.05491 -25.44096 -24.03124 -23.01259 -21.06320 -19.39864 -19.14787 -18.10390 -17.77672 -17.68357 -16.94179 -16.60866 -16.41086 -16.07186 -15.48928 -14.95005 -14.81095 -14.70866 -14.35570 -14.18627 -13.95443 -13.80461 -13.43564 -13.30794 -12.89044 -12.81503 -12.71132 -12.52586 -12.47888 -12.12445 -11.75709 -11.61869 -11.18315 -11.04505 -11.03877 -10.78130 -10.52890 -10.07976 -9.84585 -9.81144 -9.45760 -9.06867 -9.04810 -8.64905 -8.25676 -6.51720 -6.22025 -3.93316 2.17548 2.22184 2.36617 2.78775 3.02541 3.17124 3.23102 3.26058 3.28968 3.55915 3.88724 4.08869 4.19324 4.32377 4.39743 4.49585 4.55132 4.69792 4.73708 4.80872 4.91448 4.96691 5.12959 5.16452 5.20523 5.26896 5.31339 5.48615 5.60778 5.68506 5.74324 5.87118 5.91518 6.11594 6.17325 6.35046 6.83120 6.97009 7.58432 7.78908 7.80303 7.95986 8.34238 8.49450 9.22829 10.85316 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.026596 B = 0.002118 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.546540 B =13214.001137 C =13551.992241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.096 3.904 3 N -0.604 5.604 4 C 0.516 3.484 5 O -0.486 6.486 6 C -0.166 4.166 7 C 0.513 3.487 8 N -0.861 5.861 9 O -0.495 6.495 10 C 0.114 3.886 11 C 0.092 3.908 12 N -0.649 5.649 13 C 0.566 3.434 14 O -0.510 6.510 15 C -0.144 4.144 16 S -0.059 6.059 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.090 3.910 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.399 0.601 34 H 0.403 0.597 35 H 0.134 0.866 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.269 0.731 41 H 0.090 0.910 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.832 -10.672 -30.940 33.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.026 4.026 3 N -0.340 5.340 4 C 0.301 3.699 5 O -0.357 6.357 6 C -0.209 4.209 7 C 0.295 3.705 8 N -0.427 5.427 9 O -0.367 6.367 10 C 0.009 3.991 11 C -0.033 4.033 12 N -0.388 5.388 13 C 0.356 3.644 14 O -0.383 6.383 15 C -0.295 4.295 16 S 0.168 5.832 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.746 3.254 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.034 4.034 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.227 0.773 34 H 0.234 0.766 35 H 0.151 0.849 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.108 0.892 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.376 -9.217 -29.516 31.105 hybrid contribution -2.641 -0.505 -0.297 2.705 sum -6.017 -9.721 -29.813 31.930 Atomic orbital electron populations 1.22348 0.95347 1.02822 1.03119 1.21672 0.94876 0.82257 1.03844 1.47872 1.66871 1.14152 1.05089 1.19958 0.79156 0.86269 0.84472 1.90900 1.39828 1.18888 1.86129 1.21681 1.05576 1.00774 0.92867 1.20023 0.78859 0.87558 0.84045 1.43860 1.67861 1.23173 1.07774 1.90941 1.40354 1.21553 1.83807 1.22959 0.96054 0.99131 0.80920 1.23342 0.96976 1.01034 0.81957 1.49359 1.10032 1.73666 1.05784 1.19925 0.90735 0.74922 0.78863 1.90730 1.23731 1.49232 1.74571 1.23475 0.99127 1.04770 1.02086 1.85431 1.11619 1.93781 0.92412 1.22808 0.92748 1.57419 0.95449 0.90954 1.24996 0.97480 0.94591 0.96507 1.70008 1.25129 1.45813 1.09268 0.86214 0.82046 0.78808 0.78371 1.19950 1.20790 1.19905 1.23507 0.91218 1.02031 0.86689 0.91473 0.92302 0.91032 0.89966 0.89568 0.85971 0.85870 0.77304 0.76571 0.84856 0.89854 0.90019 0.89281 0.89177 0.92091 0.89212 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.53 9.93 37.16 0.37 -0.16 16 2 C 0.10 0.35 5.05 -4.04 -0.02 0.33 16 3 N -0.60 -4.46 2.71 -165.73 -0.45 -4.91 16 4 C 0.52 4.85 7.66 -10.99 -0.08 4.77 16 5 O -0.49 -7.36 13.78 -18.96 -0.26 -7.62 16 6 C -0.17 -0.77 4.87 -29.04 -0.14 -0.91 16 7 C 0.51 4.00 8.09 -10.99 -0.09 3.92 16 8 N -0.86 -2.74 8.87 31.22 0.28 -2.46 16 9 O -0.50 -7.05 15.02 -18.96 -0.28 -7.33 16 10 C 0.11 1.13 4.49 -67.68 -0.30 0.83 16 11 C 0.09 1.07 8.19 -8.51 -0.07 1.00 16 12 N -0.65 -9.42 3.69 -185.09 -0.68 -10.10 16 13 C 0.57 11.19 8.10 -10.98 -0.09 11.10 16 14 O -0.51 -12.23 16.64 5.56 0.09 -12.14 16 15 C -0.14 -2.99 5.98 36.01 0.22 -2.77 16 16 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 17 C -0.54 -15.32 9.50 30.94 0.29 -15.02 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 21 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 25 C 0.09 0.88 6.97 -8.38 -0.06 0.82 16 26 H 0.07 0.29 6.44 -51.93 -0.33 -0.05 16 27 H 0.06 0.15 6.92 -51.93 -0.36 -0.21 16 28 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.08 0.10 6.48 -51.93 -0.34 -0.24 16 30 H 0.09 0.33 6.22 -51.93 -0.32 0.01 16 31 H 0.12 0.17 7.24 -51.93 -0.38 -0.21 16 32 H 0.12 0.20 6.92 -51.93 -0.36 -0.16 16 33 H 0.40 -0.21 8.83 -40.82 -0.36 -0.57 16 34 H 0.40 1.21 8.93 -40.82 -0.36 0.84 16 35 H 0.13 1.60 7.44 -51.93 -0.39 1.21 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.08 0.79 7.37 -51.93 -0.38 0.41 16 38 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 39 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 40 H 0.27 7.58 8.31 -40.82 -0.34 7.25 16 41 H 0.09 0.67 5.33 -51.93 -0.28 0.39 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 364.64 15.07 5.50 5.50 Total: -1.00 -42.34 364.64 -7.90 -50.24 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -5.52 Total: -4.11 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -0.07 Total: 5.91 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: -0.12 Total: -42.99 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.45 Total: -27.09 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -42.34 -7.90 -50.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079535566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.212 kcal (2) G-P(sol) polarization free energy of solvation -42.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds