Wall clock time and date at job start Tue Mar 31 2020 04:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47101 * 2 1 4 4 C 1.34774 * 119.99953 * 269.99905 * 3 2 1 5 5 O 1.21287 * 119.99586 * 185.37272 * 4 3 2 6 6 C 1.50699 * 120.00316 * 5.37571 * 4 3 2 7 7 C 1.50695 * 109.47193 * 180.02562 * 6 4 3 8 8 N 1.34778 * 119.99797 * 180.02562 * 7 6 4 9 9 O 1.21284 * 120.00088 * 359.97438 * 7 6 4 10 10 C 1.46508 * 119.99847 * 89.99986 * 3 2 1 11 11 C 1.53491 * 114.20556 * 65.64017 * 10 3 2 12 12 N 1.47069 * 87.98357 * 220.14953 * 11 10 3 13 13 C 1.34779 * 136.05315 * 207.08846 * 12 11 10 14 14 O 1.21281 * 120.00388 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99873 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.47434 * 179.97438 * 15 13 12 17 17 C 1.76200 * 100.00086 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00028 * 359.97438 * 17 16 15 19 19 C 1.38795 * 119.99719 * 179.72844 * 17 16 15 20 20 N 1.31627 * 120.00186 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00022 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46906 * 59.99702 * 21 19 17 23 23 H 1.48490 * 109.47193 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46566 * 299.99935 * 21 19 17 25 25 C 1.47057 * 87.88679 * 27.34429 * 12 11 10 26 26 H 1.08998 * 109.46884 * 300.00327 * 1 2 3 27 27 H 1.09000 * 109.46871 * 60.00049 * 1 2 3 28 28 H 1.08998 * 109.47286 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47043 * 240.00187 * 2 1 3 30 30 H 1.09000 * 109.46871 * 119.99951 * 2 1 3 31 31 H 1.09002 * 109.46494 * 300.00112 * 6 4 3 32 32 H 1.09001 * 109.46773 * 59.99860 * 6 4 3 33 33 H 0.96999 * 120.00098 * 359.97438 * 8 7 6 34 34 H 0.97001 * 119.99824 * 180.02562 * 8 7 6 35 35 H 1.09000 * 113.27891 * 198.70701 * 10 3 2 36 36 H 1.08999 * 113.47047 * 105.36827 * 11 10 3 37 37 H 1.09000 * 113.52064 * 334.93485 * 11 10 3 38 38 H 1.09008 * 109.46904 * 59.99839 * 15 13 12 39 39 H 1.08995 * 109.47375 * 300.00175 * 15 13 12 40 40 H 0.97008 * 120.00139 * 180.02562 * 20 19 17 41 41 H 1.09000 * 113.47010 * 87.43772 * 25 12 11 42 42 H 1.09000 * 113.46644 * 217.88393 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 -1.1672 5 8 2.7387 3.1235 -1.1694 6 6 1.8783 1.3516 -2.4694 7 6 2.2293 2.2651 -3.6154 8 7 1.9900 1.8773 -4.8839 9 8 2.7263 3.3495 -3.3963 10 6 2.2626 2.0718 1.2688 11 6 3.4031 1.4719 2.1025 12 7 2.5769 1.6955 3.2985 13 6 2.8051 1.9094 4.6095 14 8 3.9426 1.9481 5.0287 15 6 1.6470 2.1007 5.5545 16 16 2.2740 2.3642 7.2319 17 6 0.7529 2.5522 8.1011 18 1 -0.1846 2.4895 7.5687 19 6 0.7595 2.7757 9.4710 20 7 1.9021 2.8468 10.1207 21 14 -0.8530 2.9757 10.3925 22 1 -1.6698 1.7458 10.2336 23 1 -0.5749 3.2019 11.8335 24 1 -1.5963 4.1380 9.8429 25 6 1.3921 1.5766 2.4355 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.4310 0.4173 -2.5675 32 1 0.8083 1.1441 -2.4842 33 1 1.5922 1.0102 -5.0591 34 1 2.2163 2.4651 -5.6216 35 1 2.3053 3.1563 1.1677 36 1 4.3140 2.0703 2.0862 37 1 3.5874 0.4182 1.8931 38 1 1.0147 1.2128 5.5387 39 1 1.0638 2.9675 5.2439 40 1 1.9067 3.0026 11.0782 41 1 1.0454 0.5504 2.3133 42 1 0.5897 2.2642 2.7027 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079535566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:45 Heat of formation + Delta-G solvation = -91.279343 kcal Electronic energy + Delta-G solvation = -25357.294216 eV Core-core repulsion = 21464.260699 eV Total energy + Delta-G solvation = -3893.033517 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.07212 -40.96298 -39.72703 -38.71625 -36.44403 -34.59824 -34.56625 -32.38040 -31.28835 -31.09662 -28.85592 -27.67527 -26.95837 -24.39216 -23.86531 -21.74865 -20.48679 -19.96410 -19.60190 -18.67040 -18.25838 -18.05629 -17.54977 -17.10945 -16.89134 -16.75255 -16.70733 -16.23050 -15.78207 -15.48343 -15.08563 -14.81611 -14.58525 -14.40302 -14.15418 -14.12133 -13.84614 -13.60578 -13.53419 -13.22352 -13.17731 -12.99477 -12.86755 -12.63654 -12.45647 -12.07424 -11.83087 -11.77275 -11.20182 -11.13735 -11.05619 -10.53930 -10.52176 -10.31759 -9.89935 -9.68226 -8.70584 -8.35341 -6.15042 1.12664 1.38996 1.43821 1.45486 1.52657 1.59771 1.70409 1.77010 2.10234 2.26242 2.75964 2.98686 3.15201 3.21091 3.44078 3.52595 3.83564 3.96280 4.09339 4.16508 4.24110 4.31332 4.32904 4.37975 4.44514 4.49342 4.51510 4.53478 4.71235 4.75470 4.86891 5.06717 5.12244 5.40310 5.54073 5.56114 5.99441 6.18554 6.33586 6.51695 6.59778 7.00894 7.05292 7.21452 7.51938 8.73718 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.026596 B = 0.002118 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.546540 B =13214.001137 C =13551.992241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.087 3.913 3 N -0.594 5.594 4 C 0.507 3.493 5 O -0.555 6.555 6 C -0.153 4.153 7 C 0.504 3.496 8 N -0.837 5.837 9 O -0.573 6.573 10 C 0.125 3.875 11 C 0.089 3.911 12 N -0.649 5.649 13 C 0.564 3.436 14 O -0.567 6.567 15 C -0.116 4.116 16 S -0.152 6.152 17 C -0.546 4.546 18 H 0.085 0.915 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 1.001 2.999 22 H -0.259 1.259 23 H -0.279 1.279 24 H -0.263 1.263 25 C 0.097 3.903 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.119 0.881 30 H 0.089 0.911 31 H 0.167 0.833 32 H 0.164 0.836 33 H 0.421 0.579 34 H 0.405 0.595 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.105 0.895 40 H 0.271 0.729 41 H 0.127 0.873 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.219 -13.570 -33.315 37.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.034 4.034 3 N -0.328 5.328 4 C 0.296 3.704 5 O -0.431 6.431 6 C -0.194 4.194 7 C 0.288 3.712 8 N -0.403 5.403 9 O -0.450 6.450 10 C 0.019 3.981 11 C -0.035 4.035 12 N -0.386 5.386 13 C 0.353 3.647 14 O -0.445 6.445 15 C -0.267 4.267 16 S 0.075 5.925 17 C -0.694 4.694 18 H 0.103 0.897 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.822 3.178 22 H -0.183 1.183 23 H -0.204 1.204 24 H -0.187 1.187 25 C -0.025 4.025 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.137 0.863 30 H 0.108 0.892 31 H 0.184 0.816 32 H 0.182 0.818 33 H 0.253 0.747 34 H 0.236 0.764 35 H 0.124 0.876 36 H 0.078 0.922 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.124 0.876 40 H 0.080 0.920 41 H 0.145 0.855 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.844 -12.226 -32.002 34.935 hybrid contribution -1.589 0.314 0.197 1.631 sum -8.432 -11.912 -31.805 34.994 Atomic orbital electron populations 1.22349 0.94386 1.03948 1.02884 1.22084 0.95635 0.79779 1.05903 1.47925 1.66041 1.15442 1.03408 1.20860 0.77802 0.85604 0.86184 1.90891 1.42970 1.22098 1.87134 1.21760 1.08496 1.00735 0.88458 1.20650 0.77743 0.86970 0.85796 1.43689 1.66115 1.23982 1.06467 1.90927 1.44144 1.24893 1.85035 1.22464 0.95107 0.98000 0.82537 1.23620 0.96547 1.02595 0.80759 1.49230 1.13270 1.71350 1.04719 1.19645 0.89471 0.75116 0.80439 1.90702 1.25379 1.52252 1.76159 1.23252 0.99539 1.06360 0.97584 1.85646 1.14233 1.94268 0.98368 1.23151 0.92774 1.57396 0.96056 0.89728 1.26172 1.01714 0.93817 0.97545 1.70185 1.27987 1.46962 1.09644 0.84973 0.76741 0.79496 0.76588 1.18345 1.20434 1.18715 1.23819 0.89772 1.04393 0.84516 0.92937 0.91461 0.89149 0.86348 0.89232 0.81567 0.81850 0.74704 0.76397 0.87648 0.92231 0.86972 0.86951 0.87645 0.91957 0.85548 0.88680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.15 9.93 71.98 0.71 0.56 16 2 C 0.09 0.20 5.05 86.38 0.44 0.64 16 3 N -0.59 -7.20 2.71 -796.63 -2.15 -9.36 16 4 C 0.51 8.74 7.66 87.66 0.67 9.42 16 5 O -0.56 -17.50 13.78 20.39 0.28 -17.22 16 6 C -0.15 -0.83 4.87 29.10 0.14 -0.69 16 7 C 0.50 7.05 8.09 87.66 0.71 7.76 16 8 N -0.84 -3.11 8.87 -173.53 -1.54 -4.65 16 9 O -0.57 -16.90 15.02 20.40 0.31 -16.59 16 10 C 0.13 2.36 4.49 45.55 0.20 2.56 16 11 C 0.09 2.02 8.19 83.17 0.68 2.70 16 12 N -0.65 -18.35 3.69 -857.89 -3.16 -21.51 16 13 C 0.56 22.59 8.10 87.66 0.71 23.30 16 14 O -0.57 -28.46 16.64 -3.03 -0.05 -28.51 16 15 C -0.12 -4.80 5.98 71.24 0.43 -4.37 16 16 S -0.15 -8.66 20.57 -56.49 -1.16 -9.82 16 17 C -0.55 -31.39 9.50 67.95 0.65 -30.74 16 18 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 19 C 0.01 0.70 5.49 84.86 0.47 1.17 16 20 N -0.91 -56.51 13.22 21.65 0.29 -56.23 16 21 Si 1.00 43.58 29.55 68.60 2.03 45.61 16 22 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 25 C 0.10 1.66 6.97 83.27 0.58 2.24 16 26 H 0.05 0.22 6.44 -2.39 -0.02 0.21 16 27 H 0.07 -0.03 6.92 -2.39 -0.02 -0.04 16 28 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 29 H 0.12 -0.50 6.48 -2.39 -0.02 -0.52 16 30 H 0.09 0.22 6.22 -2.39 -0.01 0.21 16 31 H 0.17 -0.56 7.24 -2.39 -0.02 -0.58 16 32 H 0.16 -0.41 6.92 -2.39 -0.02 -0.43 16 33 H 0.42 -2.20 8.83 -92.71 -0.82 -3.02 16 34 H 0.41 1.74 8.93 -92.71 -0.83 0.91 16 35 H 0.11 2.66 7.44 -2.39 -0.02 2.64 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.11 1.91 7.37 -2.39 -0.02 1.89 16 38 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 39 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 40 H 0.27 15.64 8.31 -92.70 -0.77 14.86 16 41 H 0.13 1.32 5.33 -2.39 -0.01 1.31 16 42 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -102.71 364.64 0.66 -102.05 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -0.56 Total: 1.68 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 6.39 Total: 14.55 kcal Atomic # 7 Polarization: -85.18 SS G_CDS: -6.57 Total: -91.75 kcal Atomic # 8 Polarization: -62.86 SS G_CDS: 0.54 Total: -62.33 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -102.71 0.66 -102.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079535566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.772 kcal (2) G-P(sol) polarization free energy of solvation -102.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds