Wall clock time and date at job start Tue Mar 31 2020 05:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00338 * 2 1 4 4 H 1.48492 * 109.47084 * 239.99498 * 3 2 1 5 5 H 1.48498 * 109.46831 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47190 * 119.99284 * 3 2 1 7 7 C 1.38814 * 119.99550 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99594 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00145 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64583 * 180.02562 * 9 7 2 11 11 C 1.54914 * 104.82992 * 204.09666 * 10 9 7 12 12 H 1.09000 * 111.00339 * 81.07133 * 11 10 9 13 13 N 1.46505 * 111.00202 * 204.91694 * 11 10 9 14 14 C 1.34778 * 120.00074 * 273.54598 * 13 11 10 15 15 O 1.21487 * 119.99740 * 0.02562 * 14 13 11 16 16 C 1.48429 * 120.00033 * 179.97438 * 14 13 11 17 17 N 1.33495 * 119.22110 * 0.02562 * 16 14 13 18 18 N 1.28919 * 122.02808 * 179.97438 * 17 16 14 19 19 C 1.33813 * 119.74306 * 0.02562 * 18 17 16 20 20 C 1.40342 * 121.78099 * 179.97438 * 19 18 17 21 21 C 1.36188 * 119.62410 * 179.97438 * 20 19 18 22 22 C 1.39441 * 121.06988 * 0.04288 * 21 20 19 23 23 C 1.36135 * 121.01789 * 359.97438 * 22 21 20 24 24 C 1.40514 * 119.55907 * 0.02562 * 23 22 21 25 25 N 1.32052 * 119.22357 * 179.72624 * 16 14 13 26 26 C 1.55405 * 101.66697 * 323.07703 * 11 10 9 27 27 H 1.09002 * 110.85092 * 153.69981 * 26 11 10 28 28 O 1.42895 * 110.69130 * 277.05126 * 26 11 10 29 29 C 1.47018 * 125.64899 * 359.97438 * 9 7 2 30 30 H 0.97004 * 119.99606 * 0.02562 * 1 2 3 31 31 H 1.08999 * 110.36956 * 322.94042 * 10 9 7 32 32 H 1.09003 * 110.36599 * 85.25946 * 10 9 7 33 33 H 0.96998 * 119.99743 * 93.55096 * 13 11 10 34 34 H 1.07995 * 120.18567 * 0.02562 * 20 19 18 35 35 H 1.07996 * 119.46089 * 179.97438 * 21 20 19 36 36 H 1.08004 * 119.49452 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.21983 * 180.02562 * 23 22 21 38 38 H 0.96706 * 113.99347 * 174.82523 * 28 26 11 39 39 H 1.09002 * 109.88241 * 298.39024 * 29 9 7 40 40 H 1.09000 * 109.88049 * 59.40154 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 1.9333 -3.7312 0.0016 11 6 0.8518 -4.6564 -0.6102 12 1 0.8571 -4.5970 -1.6986 13 7 1.0289 -6.0396 -0.1611 14 6 1.8614 -6.8633 -0.8280 15 8 2.4654 -6.4587 -1.8013 16 6 2.0413 -8.2645 -0.3726 17 7 1.3703 -8.6927 0.6991 18 7 1.4852 -9.8983 1.1412 19 6 2.2985 -10.7590 0.5181 20 6 2.4564 -12.0808 0.9627 21 6 3.2956 -12.9200 0.2948 22 6 4.0037 -12.4878 -0.8260 23 6 3.8771 -11.2132 -1.2871 24 6 3.0206 -10.3180 -0.6243 25 7 2.8566 -9.0600 -1.0406 26 6 -0.4522 -4.0433 -0.0281 27 1 -1.3017 -4.2483 -0.6795 28 8 -0.6952 -4.5339 1.2918 29 6 -0.1376 -2.5327 0.0005 30 1 -0.4850 0.8401 -0.0004 31 1 2.8331 -3.7409 -0.6135 32 1 2.1658 -4.0415 1.0203 33 1 0.5468 -6.3625 0.6162 34 1 1.9148 -12.4305 1.8291 35 1 3.4155 -13.9364 0.6395 36 1 4.6627 -13.1747 -1.3361 37 1 4.4314 -10.8922 -2.1567 38 1 -1.4528 -4.1232 1.7307 39 1 -0.5545 -2.0842 0.9023 40 1 -0.5578 -2.0500 -0.8818 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083642500.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:47 Heat of formation + Delta-G solvation = 43.087484 kcal Electronic energy + Delta-G solvation = -26962.164135 eV Core-core repulsion = 22971.806001 eV Total energy + Delta-G solvation = -3990.358134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 3.48 seconds Orbital eigenvalues (eV) -41.99215 -40.67512 -39.76568 -38.34821 -36.87128 -36.49342 -35.21981 -33.71014 -32.53781 -31.15181 -30.17171 -29.82670 -28.54086 -25.84375 -24.77874 -24.11894 -22.72598 -21.88976 -21.59993 -21.19154 -19.33145 -19.26706 -18.74075 -18.29859 -17.54350 -17.03602 -16.80442 -16.52762 -16.33090 -16.09722 -15.61904 -15.37293 -15.22203 -14.76092 -14.55516 -14.47134 -14.33398 -14.25469 -13.86055 -13.73752 -13.62855 -12.90459 -12.51314 -12.40352 -12.31109 -11.99279 -11.91547 -11.84943 -11.48919 -11.37395 -11.15250 -11.09618 -10.87459 -10.75136 -10.49839 -10.19241 -9.30279 -8.36431 -8.33101 -4.91238 -1.70206 0.29209 0.70563 0.73881 1.00499 1.61087 1.67813 1.88954 1.97958 2.06268 2.11355 2.47737 2.76260 2.85909 2.95778 3.12476 3.44525 3.55068 3.75931 3.85933 4.07669 4.15651 4.26676 4.32706 4.41511 4.42026 4.47599 4.65554 4.72888 4.78531 4.89316 5.00320 5.17859 5.42258 5.46391 5.55784 5.95377 6.05903 6.13313 6.44145 6.56914 6.69737 6.78034 6.78763 6.96936 7.40706 7.55168 8.34514 9.51185 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.028638 B = 0.002423 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.495256 B =11552.699360 C =12102.131878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.079 4.079 3 Si 1.043 2.957 4 H -0.233 1.233 5 H -0.254 1.254 6 H -0.232 1.232 7 C 0.357 3.643 8 H 0.268 0.732 9 N -0.399 5.399 10 C 0.043 3.957 11 C 0.123 3.877 12 H 0.116 0.884 13 N -0.697 5.697 14 C 0.613 3.387 15 O -0.581 6.581 16 C 0.029 3.971 17 N -0.308 5.308 18 N -0.546 5.546 19 C 0.039 3.961 20 C -0.291 4.291 21 C -0.224 4.224 22 C -0.123 4.123 23 C -0.369 4.369 24 C 0.179 3.821 25 N -0.735 5.735 26 C 0.082 3.918 27 H 0.117 0.883 28 O -0.570 6.570 29 C 0.052 3.948 30 H 0.380 0.620 31 H 0.138 0.862 32 H 0.126 0.874 33 H 0.418 0.582 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.064 0.936 38 H 0.410 0.590 39 H 0.157 0.843 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.338 62.523 2.114 63.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.313 4.313 3 Si 0.855 3.145 4 H -0.156 1.156 5 H -0.177 1.177 6 H -0.155 1.155 7 C 0.178 3.822 8 H 0.283 0.717 9 N -0.066 5.066 10 C -0.080 4.080 11 C 0.017 3.983 12 H 0.134 0.866 13 N -0.352 5.352 14 C 0.401 3.599 15 O -0.459 6.459 16 C -0.240 4.240 17 N -0.151 5.151 18 N -0.404 5.404 19 C -0.077 4.077 20 C -0.325 4.325 21 C -0.248 4.248 22 C -0.143 4.143 23 C -0.406 4.406 24 C 0.043 3.957 25 N -0.475 5.475 26 C 0.022 3.978 27 H 0.134 0.866 28 O -0.381 6.381 29 C -0.068 4.068 30 H 0.200 0.800 31 H 0.155 0.845 32 H 0.144 0.856 33 H 0.256 0.744 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.083 0.917 38 H 0.263 0.737 39 H 0.174 0.826 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.739 63.089 1.905 64.025 hybrid contribution -0.207 -0.954 0.006 0.976 sum -10.946 62.135 1.912 63.120 Atomic orbital electron populations 1.69938 1.09064 1.41639 0.96046 1.28630 0.98011 1.05969 0.98663 0.84044 0.78695 0.68453 0.83328 1.15608 1.17708 1.15504 1.26635 1.02895 0.80570 0.72106 0.71682 1.49584 1.12508 1.07723 1.36816 1.24132 0.99326 0.77978 1.06542 1.22478 0.94372 0.80728 1.00717 0.86637 1.45240 1.46333 1.10169 1.33448 1.17247 0.78296 0.83000 0.81332 1.90472 1.50063 1.76826 1.28561 1.22881 1.04921 0.97356 0.98826 1.72235 1.19669 1.11712 1.11466 1.73758 1.34214 0.98659 1.33746 1.20888 0.95398 0.96856 0.94543 1.19040 1.13437 0.93503 1.06551 1.19602 1.05971 0.98110 1.01076 1.19850 1.01652 0.94801 0.98015 1.18957 1.16545 0.96374 1.08738 1.19779 0.92202 0.92431 0.91264 1.68657 1.35397 1.04306 1.39147 1.23378 0.97014 0.90825 0.86616 0.86560 1.86610 1.55685 1.68050 1.27706 1.24500 0.76028 0.96439 1.09871 0.79974 0.84453 0.85577 0.74408 0.91351 0.88336 0.88004 0.91740 0.73704 0.82582 0.82341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 65. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 9.74 10.31 21.65 0.22 9.96 16 2 C -0.08 1.60 5.49 84.86 0.47 2.07 16 3 Si 1.04 -19.33 29.55 68.60 2.03 -17.30 16 4 H -0.23 3.69 7.11 99.48 0.71 4.40 16 5 H -0.25 3.72 7.11 99.48 0.71 4.43 16 6 H -0.23 3.74 7.11 99.48 0.71 4.45 16 7 C 0.36 -7.20 10.28 84.03 0.86 -6.34 16 8 H 0.27 -7.90 7.83 -2.91 -0.02 -7.93 16 9 N -0.40 4.22 3.39 -691.97 -2.35 1.88 16 10 C 0.04 0.16 6.92 86.86 0.60 0.76 16 11 C 0.12 1.96 3.20 46.47 0.15 2.11 16 12 H 0.12 1.96 7.73 -2.39 -0.02 1.94 16 13 N -0.70 -25.90 5.17 -437.83 -2.26 -28.16 16 14 C 0.61 34.66 7.85 86.96 0.68 35.34 16 15 O -0.58 -33.37 16.61 -3.68 -0.06 -33.43 16 16 C 0.03 2.21 7.65 137.46 1.05 3.27 16 17 N -0.31 -23.71 10.72 -52.35 -0.56 -24.27 16 18 N -0.55 -46.31 11.68 -51.80 -0.61 -46.92 16 19 C 0.04 3.44 6.68 40.33 0.27 3.71 16 20 C -0.29 -23.62 10.00 22.30 0.22 -23.40 16 21 C -0.22 -16.65 9.95 22.08 0.22 -16.43 16 22 C -0.12 -9.09 9.95 22.07 0.22 -8.87 16 23 C -0.37 -30.28 10.01 22.34 0.22 -30.05 16 24 C 0.18 15.70 6.61 40.41 0.27 15.96 16 25 N -0.74 -62.55 10.22 -182.37 -1.86 -64.42 16 26 C 0.08 0.27 4.22 31.87 0.13 0.41 16 27 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 28 O -0.57 -4.72 12.15 -148.98 -1.81 -6.53 16 29 C 0.05 -0.52 5.13 86.73 0.44 -0.07 16 30 H 0.38 -7.60 8.31 -92.71 -0.77 -8.37 16 31 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.42 16.82 6.87 -92.71 -0.64 16.19 16 34 H 0.07 5.32 8.06 -2.91 -0.02 5.29 16 35 H 0.10 6.38 8.06 -2.91 -0.02 6.36 16 36 H 0.10 6.53 8.06 -2.91 -0.02 6.51 16 37 H 0.06 5.13 8.06 -2.91 -0.02 5.11 16 38 H 0.41 -1.13 9.09 -74.05 -0.67 -1.81 16 39 H 0.16 -2.23 7.42 -2.39 -0.02 -2.25 16 40 H 0.16 -2.24 7.37 -2.39 -0.02 -2.26 16 Total: -1.00 -195.56 346.34 -1.64 -197.19 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: -0.19 Total: 33.55 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: 5.81 Total: -21.54 kcal Atomic # 7 Polarization: -144.51 SS G_CDS: -7.42 Total: -151.93 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -1.87 Total: -39.97 kcal Atomic # 14 Polarization: -19.33 SS G_CDS: 2.03 Total: -17.30 kcal Total: -195.56 -1.64 -197.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083642500.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 240.281 kcal (2) G-P(sol) polarization free energy of solvation -195.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -197.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.48 seconds