Wall clock time and date at job start Tue Mar 31 2020 06:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00438 * 2 1 4 4 H 1.48501 * 109.46815 * 272.94082 * 3 2 1 5 5 H 1.48504 * 109.46873 * 32.93738 * 3 2 1 6 6 H 1.48500 * 109.47293 * 152.94236 * 3 2 1 7 7 C 1.38815 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00092 * 339.34691 * 7 2 1 9 9 N 1.36939 * 120.00059 * 159.34499 * 7 2 1 10 10 C 1.46924 * 120.62981 * 332.63146 * 9 7 2 11 11 C 1.53191 * 108.77425 * 233.58713 * 10 9 7 12 12 C 1.53047 * 109.30931 * 305.36480 * 11 10 9 13 13 H 1.09006 * 109.45392 * 181.38826 * 12 11 10 14 14 N 1.46496 * 109.46267 * 301.34309 * 12 11 10 15 15 C 1.34774 * 120.00000 * 275.00858 * 14 12 11 16 16 O 1.21665 * 120.00519 * 359.97438 * 15 14 12 17 17 C 1.46920 * 120.00025 * 179.97438 * 15 14 12 18 18 C 1.36372 * 126.76451 * 0.02562 * 17 15 14 19 19 N 1.35473 * 109.76535 * 179.97438 * 18 17 15 20 20 H 0.97006 * 124.78925 * 179.97438 * 19 18 17 21 21 C 1.37956 * 110.42887 * 359.97438 * 19 18 17 22 22 C 1.39121 * 133.19261 * 180.02562 * 21 19 18 23 23 C 1.37769 * 119.93032 * 179.29269 * 22 21 19 24 24 C 1.38756 * 120.63263 * 0.59202 * 23 22 21 25 25 C 1.37748 * 120.30246 * 359.62364 * 24 23 22 26 26 C 1.39275 * 119.67042 * 359.97438 * 25 24 23 27 27 C 1.53040 * 109.54021 * 61.36705 * 12 11 10 28 28 H 1.09004 * 109.49473 * 58.58164 * 27 12 11 29 29 O 1.42895 * 109.49825 * 178.68193 * 27 12 11 30 30 C 1.46925 * 120.62880 * 152.60967 * 9 7 2 31 31 H 0.96995 * 119.99495 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.58667 * 113.79946 * 10 9 7 33 33 H 1.08998 * 109.70174 * 353.44285 * 10 9 7 34 34 H 1.08996 * 109.50250 * 65.31133 * 11 10 9 35 35 H 1.08995 * 109.50041 * 185.41832 * 11 10 9 36 36 H 0.97000 * 119.99961 * 94.99825 * 14 12 11 37 37 H 1.07996 * 125.11956 * 359.95559 * 18 17 15 38 38 H 1.07999 * 120.03756 * 359.97438 * 22 21 19 39 39 H 1.08003 * 119.68285 * 180.21560 * 23 22 21 40 40 H 1.08001 * 119.84557 * 179.59265 * 24 23 22 41 41 H 1.08003 * 120.16361 * 179.97438 * 25 24 23 42 42 H 0.96697 * 114.00244 * 179.83798 * 29 27 12 43 43 H 1.09005 * 109.58555 * 246.19984 * 30 9 7 44 44 H 1.09004 * 109.58986 * 6.62323 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4356 2.0822 -1.3983 5 1 1.4802 2.6339 0.7613 6 1 3.5776 1.4228 0.6369 7 6 2.0102 -1.2022 0.0005 8 1 1.5223 -2.1073 0.3308 9 7 3.3136 -1.2406 -0.4178 10 6 3.8173 -0.2597 -1.3887 11 6 4.4622 -1.0100 -2.5583 12 6 5.5289 -1.9662 -2.0196 13 1 6.0064 -2.4834 -2.8518 14 7 6.5358 -1.2051 -1.2760 15 6 7.5650 -0.6309 -1.9298 16 8 7.6582 -0.7449 -3.1375 17 6 8.5746 0.1329 -1.1841 18 6 8.6058 0.3472 0.1623 19 7 9.6883 1.0963 0.4820 20 1 9.9211 1.3774 1.3808 21 6 10.4132 1.4031 -0.6510 22 6 11.5801 2.1290 -0.8673 23 6 12.0849 2.2548 -2.1430 24 6 11.4336 1.6735 -3.2216 25 6 10.2746 0.9546 -3.0284 26 6 9.7576 0.8125 -1.7430 27 6 4.8752 -2.9910 -1.0898 28 1 4.1086 -3.5408 -1.6361 29 8 5.8668 -3.9020 -0.6116 30 6 4.2349 -2.2631 0.0963 31 1 -0.4849 0.8400 -0.0004 32 1 4.5598 0.3794 -0.9108 33 1 2.9923 0.3504 -1.7564 34 1 3.6996 -1.5785 -3.0906 35 1 4.9247 -0.2950 -3.2386 36 1 6.4618 -1.1144 -0.3131 37 1 7.8771 -0.0241 0.8676 38 1 12.0958 2.5842 -0.0347 39 1 12.9930 2.8162 -2.3059 40 1 11.8371 1.7857 -4.2171 41 1 9.7692 0.5035 -3.8696 42 1 5.5229 -4.5794 -0.0134 43 1 5.0115 -1.7874 0.6953 44 1 3.6839 -2.9768 0.7088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090403653.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:34 Heat of formation + Delta-G solvation = 4.088383 kcal Electronic energy + Delta-G solvation = -28430.194735 eV Core-core repulsion = 24541.685817 eV Total energy + Delta-G solvation = -3888.508918 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.55495 -39.70550 -37.83666 -37.06996 -35.65441 -34.08862 -32.32522 -31.79713 -30.53564 -29.66352 -29.40215 -28.58164 -25.39537 -23.32542 -23.09271 -22.69815 -21.96319 -21.74659 -19.90175 -18.99722 -18.33091 -17.19611 -16.72768 -16.58899 -16.30253 -15.67371 -15.44815 -15.13221 -15.03172 -14.54579 -14.26959 -14.23340 -13.96335 -13.90953 -13.47949 -13.40162 -12.81037 -12.61278 -12.50454 -12.29224 -11.87886 -11.87203 -11.77121 -11.56265 -11.23871 -11.17987 -11.11504 -10.33080 -10.10507 -9.97778 -9.84249 -9.71836 -9.61128 -9.56295 -8.78666 -8.61958 -8.46609 -7.89883 -7.09447 -6.04357 -3.42197 0.86904 1.41794 1.97852 2.79275 3.27726 3.41407 3.43411 3.47447 3.51410 3.90532 4.30813 4.44597 4.51699 4.59101 4.84842 4.88183 4.94321 5.04878 5.16940 5.25050 5.33778 5.41679 5.45401 5.53284 5.53660 5.65697 5.71894 5.79410 5.94914 6.03120 6.21341 6.24851 6.35799 6.36573 6.37811 6.43916 6.50055 6.56086 6.61163 6.71838 6.88483 6.94620 7.17474 7.76178 7.84883 7.89469 8.22278 8.57046 8.81675 9.61053 9.96267 11.11150 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.015336 B = 0.003613 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.351831 B = 7747.227451 C = 8491.901063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.027 3.973 3 Si 0.884 3.116 4 H -0.287 1.287 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.266 4.266 8 H 0.086 0.914 9 N -0.601 5.601 10 C 0.126 3.874 11 C -0.145 4.145 12 C 0.167 3.833 13 H 0.086 0.914 14 N -0.709 5.709 15 C 0.589 3.411 16 O -0.549 6.549 17 C -0.220 4.220 18 C 0.108 3.892 19 N -0.580 5.580 20 H 0.419 0.581 21 C 0.084 3.916 22 C -0.130 4.130 23 C -0.102 4.102 24 C -0.145 4.145 25 C -0.061 4.061 26 C -0.062 4.062 27 C 0.076 3.924 28 H 0.071 0.929 29 O -0.569 6.569 30 C 0.122 3.878 31 H 0.264 0.736 32 H 0.027 0.973 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.397 0.603 37 H 0.179 0.821 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.134 0.866 42 H 0.375 0.625 43 H 0.025 0.975 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.582 0.678 1.021 21.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.172 4.172 3 Si 0.714 3.286 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.197 1.197 7 C -0.394 4.394 8 H 0.104 0.896 9 N -0.326 5.326 10 C 0.001 3.999 11 C -0.186 4.186 12 C 0.063 3.937 13 H 0.104 0.896 14 N -0.359 5.359 15 C 0.377 3.623 16 O -0.428 6.428 17 C -0.231 4.231 18 C -0.025 4.025 19 N -0.181 5.181 20 H 0.257 0.743 21 C -0.021 4.021 22 C -0.150 4.150 23 C -0.121 4.121 24 C -0.164 4.164 25 C -0.079 4.079 26 C -0.067 4.067 27 C 0.015 3.985 28 H 0.089 0.911 29 O -0.373 6.373 30 C -0.005 4.005 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.232 0.768 37 H 0.196 0.804 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.152 0.848 42 H 0.222 0.778 43 H 0.042 0.958 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 21.867 1.066 -0.085 21.893 hybrid contribution -0.053 0.877 1.423 1.673 sum 21.814 1.943 1.339 21.941 Atomic orbital electron populations 1.69829 1.05739 1.26717 1.52399 1.25258 0.95195 0.97609 0.99161 0.86952 0.79828 0.84639 0.77167 1.21489 1.23118 1.19727 1.18880 0.84742 0.94845 1.40929 0.89604 1.44284 1.08517 1.33097 1.46682 1.21338 0.97237 0.91994 0.89310 1.22412 0.97571 0.99260 0.99330 1.20797 0.88195 0.90748 0.93994 0.89607 1.45789 1.25325 1.53761 1.11075 1.17151 0.80132 0.78242 0.86765 1.90733 1.76606 1.61553 1.13875 1.20144 1.00053 1.10471 0.92445 1.22151 0.90204 0.93978 0.96147 1.41509 1.22019 1.45798 1.08805 0.74330 1.18269 0.95868 1.01938 0.86048 1.19986 0.94852 1.02249 0.97921 1.20807 0.99713 0.99821 0.91727 1.20978 0.96344 1.00117 0.98957 1.20739 0.94818 0.96653 0.95705 1.18767 0.94761 1.00034 0.93114 1.22708 0.89559 0.89842 0.96409 0.91063 1.86492 1.37589 1.45274 1.67935 1.21554 0.92882 0.92436 0.93604 0.92621 0.95509 0.90724 0.90455 0.91256 0.76784 0.80416 0.86220 0.85722 0.85808 0.84811 0.77832 0.95751 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.97 55.49 0.78 -26.20 16 2 C 0.03 0.76 5.23 -17.43 -0.09 0.67 16 3 Si 0.88 21.86 24.35 -169.99 -4.14 17.72 16 4 H -0.29 -7.01 6.62 56.52 0.37 -6.64 16 5 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 6 H -0.27 -6.49 6.64 56.52 0.38 -6.12 16 7 C -0.27 -7.04 10.03 -15.06 -0.15 -7.19 16 8 H 0.09 2.42 8.06 -52.49 -0.42 1.99 16 9 N -0.60 -13.24 2.77 -172.32 -0.48 -13.72 16 10 C 0.13 2.68 3.94 -3.71 -0.01 2.67 16 11 C -0.15 -2.67 5.77 -26.61 -0.15 -2.83 16 12 C 0.17 2.81 2.47 -67.89 -0.17 2.64 16 13 H 0.09 1.52 7.57 -51.93 -0.39 1.13 16 14 N -0.71 -11.19 4.14 -55.00 -0.23 -11.42 16 15 C 0.59 10.00 7.76 -12.75 -0.10 9.90 16 16 O -0.55 -10.88 15.82 5.22 0.08 -10.80 16 17 C -0.22 -3.21 6.27 -103.31 -0.65 -3.86 16 18 C 0.11 1.17 11.33 -16.62 -0.19 0.98 16 19 N -0.58 -5.39 5.99 -10.49 -0.06 -5.45 16 20 H 0.42 2.35 8.96 -40.82 -0.37 1.98 16 21 C 0.08 0.98 7.26 -83.97 -0.61 0.37 16 22 C -0.13 -1.26 10.07 -39.43 -0.40 -1.66 16 23 C -0.10 -0.96 10.01 -39.56 -0.40 -1.36 16 24 C -0.14 -1.57 10.03 -39.57 -0.40 -1.96 16 25 C -0.06 -0.83 9.85 -39.38 -0.39 -1.22 16 26 C -0.06 -0.89 6.27 -104.95 -0.66 -1.55 16 27 C 0.08 1.18 3.36 -26.61 -0.09 1.09 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 O -0.57 -7.77 13.21 -35.23 -0.47 -8.24 16 30 C 0.12 2.13 5.84 -3.71 -0.02 2.11 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.03 0.57 6.67 -51.93 -0.35 0.22 16 33 H 0.07 1.77 4.50 -51.93 -0.23 1.53 16 34 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.40 5.66 5.75 -40.82 -0.23 5.43 16 37 H 0.18 1.43 7.38 -52.49 -0.39 1.05 16 38 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 39 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.13 1.94 7.45 -52.48 -0.39 1.55 16 42 H 0.38 3.56 9.08 45.56 0.41 3.97 16 43 H 0.02 0.40 6.64 -51.93 -0.34 0.06 16 44 H 0.07 1.17 7.93 -51.93 -0.41 0.76 16 LS Contribution 353.01 15.07 5.32 5.32 Total: -1.00 -34.66 353.01 -8.51 -43.17 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -4.84 Total: 10.82 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -4.47 Total: -1.19 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.01 Total: -56.80 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.38 Total: -19.04 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.14 Total: 17.72 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.66 -8.51 -43.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090403653.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.258 kcal (2) G-P(sol) polarization free energy of solvation -34.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds