Wall clock time and date at job start Tue Mar 31 2020 06:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00438 * 2 1 4 4 H 1.48501 * 109.46815 * 272.94082 * 3 2 1 5 5 H 1.48504 * 109.46873 * 32.93738 * 3 2 1 6 6 H 1.48500 * 109.47293 * 152.94236 * 3 2 1 7 7 C 1.38815 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00092 * 339.34691 * 7 2 1 9 9 N 1.36939 * 120.00059 * 159.34499 * 7 2 1 10 10 C 1.46924 * 120.62981 * 332.63146 * 9 7 2 11 11 C 1.53191 * 108.77425 * 233.58713 * 10 9 7 12 12 C 1.53047 * 109.30931 * 305.36480 * 11 10 9 13 13 H 1.09006 * 109.45392 * 181.38826 * 12 11 10 14 14 N 1.46496 * 109.46267 * 301.34309 * 12 11 10 15 15 C 1.34774 * 120.00000 * 275.00858 * 14 12 11 16 16 O 1.21665 * 120.00519 * 359.97438 * 15 14 12 17 17 C 1.46920 * 120.00025 * 179.97438 * 15 14 12 18 18 C 1.36372 * 126.76451 * 0.02562 * 17 15 14 19 19 N 1.35473 * 109.76535 * 179.97438 * 18 17 15 20 20 H 0.97006 * 124.78925 * 179.97438 * 19 18 17 21 21 C 1.37956 * 110.42887 * 359.97438 * 19 18 17 22 22 C 1.39121 * 133.19261 * 180.02562 * 21 19 18 23 23 C 1.37769 * 119.93032 * 179.29269 * 22 21 19 24 24 C 1.38756 * 120.63263 * 0.59202 * 23 22 21 25 25 C 1.37748 * 120.30246 * 359.62364 * 24 23 22 26 26 C 1.39275 * 119.67042 * 359.97438 * 25 24 23 27 27 C 1.53040 * 109.54021 * 61.36705 * 12 11 10 28 28 H 1.09004 * 109.49473 * 58.58164 * 27 12 11 29 29 O 1.42895 * 109.49825 * 178.68193 * 27 12 11 30 30 C 1.46925 * 120.62880 * 152.60967 * 9 7 2 31 31 H 0.96995 * 119.99495 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.58667 * 113.79946 * 10 9 7 33 33 H 1.08998 * 109.70174 * 353.44285 * 10 9 7 34 34 H 1.08996 * 109.50250 * 65.31133 * 11 10 9 35 35 H 1.08995 * 109.50041 * 185.41832 * 11 10 9 36 36 H 0.97000 * 119.99961 * 94.99825 * 14 12 11 37 37 H 1.07996 * 125.11956 * 359.95559 * 18 17 15 38 38 H 1.07999 * 120.03756 * 359.97438 * 22 21 19 39 39 H 1.08003 * 119.68285 * 180.21560 * 23 22 21 40 40 H 1.08001 * 119.84557 * 179.59265 * 24 23 22 41 41 H 1.08003 * 120.16361 * 179.97438 * 25 24 23 42 42 H 0.96697 * 114.00244 * 179.83798 * 29 27 12 43 43 H 1.09005 * 109.58555 * 246.19984 * 30 9 7 44 44 H 1.09004 * 109.58986 * 6.62323 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4356 2.0822 -1.3983 5 1 1.4802 2.6339 0.7613 6 1 3.5776 1.4228 0.6369 7 6 2.0102 -1.2022 0.0005 8 1 1.5223 -2.1073 0.3308 9 7 3.3136 -1.2406 -0.4178 10 6 3.8173 -0.2597 -1.3887 11 6 4.4622 -1.0100 -2.5583 12 6 5.5289 -1.9662 -2.0196 13 1 6.0064 -2.4834 -2.8518 14 7 6.5358 -1.2051 -1.2760 15 6 7.5650 -0.6309 -1.9298 16 8 7.6582 -0.7449 -3.1375 17 6 8.5746 0.1329 -1.1841 18 6 8.6058 0.3472 0.1623 19 7 9.6883 1.0963 0.4820 20 1 9.9211 1.3774 1.3808 21 6 10.4132 1.4031 -0.6510 22 6 11.5801 2.1290 -0.8673 23 6 12.0849 2.2548 -2.1430 24 6 11.4336 1.6735 -3.2216 25 6 10.2746 0.9546 -3.0284 26 6 9.7576 0.8125 -1.7430 27 6 4.8752 -2.9910 -1.0898 28 1 4.1086 -3.5408 -1.6361 29 8 5.8668 -3.9020 -0.6116 30 6 4.2349 -2.2631 0.0963 31 1 -0.4849 0.8400 -0.0004 32 1 4.5598 0.3794 -0.9108 33 1 2.9923 0.3504 -1.7564 34 1 3.6996 -1.5785 -3.0906 35 1 4.9247 -0.2950 -3.2386 36 1 6.4618 -1.1144 -0.3131 37 1 7.8771 -0.0241 0.8676 38 1 12.0958 2.5842 -0.0347 39 1 12.9930 2.8162 -2.3059 40 1 11.8371 1.7857 -4.2171 41 1 9.7692 0.5035 -3.8696 42 1 5.5229 -4.5794 -0.0134 43 1 5.0115 -1.7874 0.6953 44 1 3.6839 -2.9768 0.7088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090403653.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:33 Heat of formation + Delta-G solvation = -22.752868 kcal Electronic energy + Delta-G solvation = -28431.358659 eV Core-core repulsion = 24541.685817 eV Total energy + Delta-G solvation = -3889.672842 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.42639 -41.03583 -39.19713 -37.88451 -37.06579 -35.57930 -33.86133 -33.08840 -31.99583 -30.79550 -30.47679 -29.63262 -27.14771 -24.55907 -24.21177 -23.91356 -23.48749 -22.67460 -21.06793 -20.44786 -19.23465 -18.83333 -18.02562 -17.70347 -17.36628 -17.12743 -16.60122 -16.37330 -16.29965 -15.96340 -15.55054 -15.50551 -15.18979 -14.88103 -14.80985 -14.56240 -14.39134 -14.07050 -13.78874 -13.60552 -13.37556 -13.16484 -12.98195 -12.78498 -12.67632 -12.60060 -12.16566 -11.96234 -11.83731 -11.59075 -11.36158 -11.19222 -10.90483 -10.74364 -10.66338 -10.04121 -9.29436 -8.96170 -8.76930 -8.17774 -5.50587 0.00615 0.57045 1.02407 1.31472 1.39081 1.47706 2.02738 2.27677 2.40522 2.43576 2.94069 2.97268 3.13658 3.39306 3.70836 3.79163 3.85991 3.92794 4.00716 4.13599 4.19939 4.24406 4.31947 4.36069 4.44050 4.52367 4.60673 4.70127 4.75943 4.77992 4.87449 4.91503 4.95358 5.07725 5.15013 5.20460 5.43805 5.51022 5.54974 5.63293 5.70440 5.83720 6.11906 6.12591 6.52193 6.65798 6.81939 6.94754 7.34468 7.58558 7.98077 9.01476 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.015336 B = 0.003613 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.351831 B = 7747.227451 C = 8491.901063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.030 4.030 3 Si 0.939 3.061 4 H -0.288 1.288 5 H -0.312 1.312 6 H -0.252 1.252 7 C -0.246 4.246 8 H 0.062 0.938 9 N -0.610 5.610 10 C 0.129 3.871 11 C -0.137 4.137 12 C 0.170 3.830 13 H 0.076 0.924 14 N -0.701 5.701 15 C 0.586 3.414 16 O -0.591 6.591 17 C -0.272 4.272 18 C 0.139 3.861 19 N -0.560 5.560 20 H 0.440 0.560 21 C 0.072 3.928 22 C -0.120 4.120 23 C -0.104 4.104 24 C -0.140 4.140 25 C -0.100 4.100 26 C -0.094 4.094 27 C 0.095 3.905 28 H 0.068 0.932 29 O -0.568 6.568 30 C 0.120 3.880 31 H 0.261 0.739 32 H 0.035 0.965 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.406 0.594 37 H 0.211 0.789 38 H 0.155 0.845 39 H 0.160 0.840 40 H 0.141 0.859 41 H 0.106 0.894 42 H 0.396 0.604 43 H 0.048 0.952 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.976 1.414 3.133 25.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.225 4.225 3 Si 0.768 3.232 4 H -0.216 1.216 5 H -0.241 1.241 6 H -0.176 1.176 7 C -0.375 4.375 8 H 0.079 0.921 9 N -0.336 5.336 10 C 0.004 3.996 11 C -0.177 4.177 12 C 0.065 3.935 13 H 0.094 0.906 14 N -0.352 5.352 15 C 0.376 3.624 16 O -0.473 6.473 17 C -0.283 4.283 18 C 0.004 3.996 19 N -0.162 5.162 20 H 0.282 0.718 21 C -0.033 4.033 22 C -0.140 4.140 23 C -0.123 4.123 24 C -0.159 4.159 25 C -0.118 4.118 26 C -0.098 4.098 27 C 0.034 3.966 28 H 0.086 0.914 29 O -0.375 6.375 30 C -0.005 4.005 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.243 0.757 37 H 0.228 0.772 38 H 0.173 0.827 39 H 0.177 0.823 40 H 0.159 0.841 41 H 0.125 0.875 42 H 0.247 0.753 43 H 0.066 0.934 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 25.337 1.783 2.085 25.485 hybrid contribution -0.997 0.560 0.772 1.380 sum 24.340 2.343 2.856 24.618 Atomic orbital electron populations 1.69952 1.07357 1.27156 1.55507 1.25825 0.95681 1.00675 1.00298 0.86043 0.79281 0.80853 0.76977 1.21555 1.24132 1.17601 1.18861 0.86458 0.93677 1.38508 0.92057 1.44327 1.07885 1.34162 1.47195 1.21267 0.96412 0.91980 0.89977 1.22276 0.97859 0.99303 0.98243 1.20642 0.87811 0.90710 0.94341 0.90615 1.45661 1.24794 1.53461 1.11329 1.17572 0.80455 0.77872 0.86469 1.90700 1.77624 1.63208 1.15786 1.20055 1.00837 1.13260 0.94141 1.22535 0.90140 0.91774 0.95170 1.41497 1.20904 1.44443 1.09375 0.71825 1.18475 0.96583 1.02326 0.85902 1.20452 0.93770 1.00675 0.99141 1.21236 1.00558 0.99375 0.91134 1.21268 0.95163 0.98792 1.00651 1.20720 0.96680 0.99159 0.95276 1.19081 0.95502 1.01053 0.94207 1.22307 0.89444 0.89684 0.95192 0.91430 1.86470 1.36918 1.45528 1.68576 1.21754 0.92644 0.91580 0.94517 0.92990 0.94700 0.93404 0.90688 0.91690 0.75713 0.77207 0.82708 0.82275 0.84074 0.87549 0.75348 0.93415 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.38 13.97 21.65 0.30 -58.07 16 2 C -0.03 -1.67 5.23 84.86 0.44 -1.22 16 3 Si 0.94 45.28 24.35 68.60 1.67 46.95 16 4 H -0.29 -13.77 6.62 99.48 0.66 -13.12 16 5 H -0.31 -15.41 7.11 99.48 0.71 -14.70 16 6 H -0.25 -11.17 6.64 99.48 0.66 -10.51 16 7 C -0.25 -13.01 10.03 84.03 0.84 -12.17 16 8 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 9 N -0.61 -26.14 2.77 -699.10 -1.94 -28.08 16 10 C 0.13 5.34 3.94 86.36 0.34 5.68 16 11 C -0.14 -5.00 5.77 30.67 0.18 -4.82 16 12 C 0.17 5.57 2.47 45.02 0.11 5.69 16 13 H 0.08 2.68 7.57 -2.38 -0.02 2.67 16 14 N -0.70 -21.20 4.14 -446.14 -1.85 -23.05 16 15 C 0.59 19.94 7.76 86.52 0.67 20.61 16 16 O -0.59 -24.49 15.82 -4.24 -0.07 -24.56 16 17 C -0.27 -7.73 6.27 -19.01 -0.12 -7.85 16 18 C 0.14 2.60 11.33 83.70 0.95 3.55 16 19 N -0.56 -8.35 5.99 -187.09 -1.12 -9.47 16 20 H 0.44 2.86 8.96 -92.70 -0.83 2.03 16 21 C 0.07 1.50 7.26 38.92 0.28 1.78 16 22 C -0.12 -1.89 10.07 22.37 0.23 -1.66 16 23 C -0.10 -1.64 10.01 22.28 0.22 -1.42 16 24 C -0.14 -2.89 10.03 22.28 0.22 -2.67 16 25 C -0.10 -2.82 9.85 22.40 0.22 -2.60 16 26 C -0.09 -2.67 6.27 -20.08 -0.13 -2.80 16 27 C 0.09 2.77 3.36 30.67 0.10 2.87 16 28 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 29 O -0.57 -13.87 13.21 -148.98 -1.97 -15.84 16 30 C 0.12 3.91 5.84 86.36 0.50 4.41 16 31 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 32 H 0.04 1.40 6.67 -2.39 -0.02 1.39 16 33 H 0.05 2.25 4.50 -2.39 -0.01 2.24 16 34 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.41 10.43 5.75 -92.71 -0.53 9.89 16 37 H 0.21 2.41 7.38 -2.91 -0.02 2.38 16 38 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 39 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 40 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 41 H 0.11 3.44 7.45 -2.91 -0.02 3.42 16 42 H 0.40 6.14 9.08 -74.06 -0.67 5.47 16 43 H 0.05 1.38 6.64 -2.38 -0.02 1.36 16 44 H 0.07 2.36 7.93 -2.38 -0.02 2.35 16 Total: -1.00 -78.86 353.01 -0.95 -79.81 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -1.06 Total: 24.95 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 5.07 Total: 7.38 kcal Atomic # 7 Polarization: -114.08 SS G_CDS: -4.60 Total: -118.68 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -2.04 Total: -40.40 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.67 Total: 46.95 kcal Total: -78.86 -0.95 -79.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090403653.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.054 kcal (2) G-P(sol) polarization free energy of solvation -78.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds