Wall clock time and date at job start Tue Mar 31 2020 06:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99707 * 2 1 4 4 H 1.48504 * 109.47268 * 270.00042 * 3 2 1 5 5 H 1.48502 * 109.47416 * 30.00370 * 3 2 1 6 6 H 1.48507 * 109.47127 * 150.00096 * 3 2 1 7 7 C 1.38805 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99878 * 163.12335 * 7 2 1 9 9 N 1.36942 * 120.00309 * 343.11515 * 7 2 1 10 10 C 1.46921 * 120.62733 * 331.88271 * 9 7 2 11 11 C 1.53191 * 108.77663 * 233.32958 * 10 9 7 12 12 C 1.53037 * 109.31329 * 305.36980 * 11 10 9 13 13 H 1.08994 * 109.46334 * 301.35557 * 12 11 10 14 14 N 1.46505 * 109.45562 * 181.38121 * 12 11 10 15 15 C 1.34775 * 119.99601 * 85.00601 * 14 12 11 16 16 O 1.21668 * 120.00410 * 359.97438 * 15 14 12 17 17 C 1.46911 * 120.00031 * 179.97438 * 15 14 12 18 18 C 1.36379 * 126.76540 * 0.02562 * 17 15 14 19 19 N 1.35478 * 109.76660 * 180.02562 * 18 17 15 20 20 H 0.97004 * 124.78538 * 179.97438 * 19 18 17 21 21 C 1.37964 * 110.42663 * 0.02562 * 19 18 17 22 22 C 1.39120 * 133.18721 * 180.02562 * 21 19 18 23 23 C 1.37775 * 119.92569 * 179.26133 * 22 21 19 24 24 C 1.38746 * 120.63261 * 0.57260 * 23 22 21 25 25 C 1.37757 * 120.30596 * 359.64552 * 24 23 22 26 26 C 1.39272 * 119.66814 * 359.97438 * 25 24 23 27 27 C 1.53042 * 109.53830 * 61.36726 * 12 11 10 28 28 H 1.08999 * 109.49699 * 58.61298 * 27 12 11 29 29 O 1.42900 * 109.49692 * 178.68507 * 27 12 11 30 30 C 1.46922 * 120.62727 * 151.60725 * 9 7 2 31 31 H 0.96995 * 120.00418 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.58788 * 353.12197 * 10 9 7 33 33 H 1.09011 * 109.58401 * 113.54526 * 10 9 7 34 34 H 1.09001 * 109.49176 * 65.32438 * 11 10 9 35 35 H 1.09004 * 109.49815 * 185.37965 * 11 10 9 36 36 H 0.97001 * 120.00368 * 264.99528 * 14 12 11 37 37 H 1.07997 * 125.11690 * 359.97438 * 18 17 15 38 38 H 1.08004 * 120.03785 * 359.97433 * 22 21 19 39 39 H 1.08001 * 119.67902 * 180.16993 * 23 22 21 40 40 H 1.08001 * 119.84667 * 179.62346 * 24 23 22 41 41 H 1.07997 * 120.16501 * 180.02562 * 25 24 23 42 42 H 0.96699 * 113.99954 * 179.97438 * 29 27 12 43 43 H 1.09003 * 109.58165 * 246.45378 * 30 9 7 44 44 H 1.08999 * 109.59419 * 6.87345 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0554 -1.2221 -0.2721 9 7 1.3699 -2.3627 0.3434 10 6 0.2248 -2.3413 1.2637 11 6 0.4922 -3.3261 2.4063 12 6 0.8038 -4.7060 1.8226 13 1 -0.0363 -5.0414 1.2146 14 7 1.0276 -5.6581 2.9135 15 6 -0.0195 -6.2809 3.4896 16 8 -1.1506 -6.0523 3.1042 17 6 0.2048 -7.2360 4.5831 18 6 1.4059 -7.5934 5.1212 19 7 1.2136 -8.4990 6.1104 20 1 1.9213 -8.8996 6.6392 21 6 -0.1306 -8.7718 6.2587 22 6 -0.8440 -9.6085 7.1111 23 6 -2.2185 -9.6602 7.0318 24 6 -2.9022 -8.8929 6.0998 25 6 -2.2135 -8.0616 5.2440 26 6 -0.8244 -7.9936 5.3184 27 6 2.0606 -4.6221 0.9534 28 1 2.8958 -4.2636 1.5550 29 8 2.3684 -5.9172 0.4336 30 6 1.8111 -3.6520 -0.2057 31 1 -0.4850 0.8400 0.0004 32 1 0.1001 -1.3370 1.6686 33 1 -0.6785 -2.6373 0.7301 34 1 1.3420 -2.9792 2.9941 35 1 -0.3892 -3.3910 3.0444 36 1 1.9294 -5.8402 3.2209 37 1 2.3660 -7.2126 4.8057 38 1 -0.3217 -10.2082 7.8418 39 1 -2.7684 -10.3091 7.6973 40 1 -3.9794 -8.9479 6.0447 41 1 -2.7480 -7.4651 4.5197 42 1 3.1551 -5.9387 -0.1283 43 1 1.0372 -4.0548 -0.8592 44 1 2.7328 -3.5126 -0.7705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090403654.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:38 Heat of formation + Delta-G solvation = -3.750951 kcal Electronic energy + Delta-G solvation = -27692.720778 eV Core-core repulsion = 23803.871920 eV Total energy + Delta-G solvation = -3888.848857 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.56231 -39.37782 -37.71484 -37.07643 -35.38095 -34.18334 -32.32282 -31.77473 -30.15856 -29.66523 -29.03320 -28.26259 -25.21449 -23.20630 -23.10941 -22.24912 -21.92976 -21.39884 -19.81097 -19.18593 -18.27881 -17.11117 -16.72901 -16.47778 -16.18651 -15.69757 -15.46691 -15.03187 -14.79445 -14.27523 -14.03429 -13.97038 -13.91241 -13.79595 -13.38122 -13.10194 -12.84425 -12.67661 -12.23235 -12.01790 -11.87730 -11.81088 -11.53506 -11.13068 -11.08265 -10.85950 -10.63435 -10.29892 -10.25666 -9.93281 -9.84508 -9.75802 -9.68044 -9.37043 -8.68407 -8.48129 -8.42545 -7.90465 -6.74674 -5.83461 -3.28071 0.85685 1.41086 1.97309 2.76005 3.34556 3.41965 3.43480 3.50441 3.53316 3.91455 4.38767 4.47879 4.54296 4.56726 4.84640 4.94180 5.03392 5.30109 5.32603 5.36363 5.40445 5.50522 5.52434 5.59590 5.65208 5.80784 5.95536 6.01829 6.16958 6.24194 6.34562 6.38428 6.49648 6.51103 6.55119 6.60644 6.71981 6.80736 6.94059 6.95964 7.14901 7.32615 7.63745 7.74128 7.88807 7.94074 8.39520 8.62604 9.14717 9.77123 10.33431 11.25028 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.022701 B = 0.002591 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.143281 B =10803.322470 C =11248.515954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.259 4.259 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.146 4.146 12 C 0.165 3.835 13 H 0.088 0.912 14 N -0.715 5.715 15 C 0.585 3.415 16 O -0.542 6.542 17 C -0.216 4.216 18 C 0.103 3.897 19 N -0.581 5.581 20 H 0.418 0.582 21 C 0.084 3.916 22 C -0.131 4.131 23 C -0.101 4.101 24 C -0.145 4.145 25 C -0.060 4.060 26 C -0.064 4.064 27 C 0.080 3.920 28 H 0.055 0.945 29 O -0.571 6.571 30 C 0.121 3.879 31 H 0.256 0.744 32 H 0.092 0.908 33 H 0.024 0.976 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.391 0.609 37 H 0.178 0.822 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.135 0.865 42 H 0.373 0.627 43 H 0.029 0.971 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.808 -19.130 13.982 23.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.389 4.389 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.046 3.954 11 C -0.187 4.187 12 C 0.061 3.939 13 H 0.106 0.894 14 N -0.364 5.364 15 C 0.373 3.627 16 O -0.420 6.420 17 C -0.227 4.227 18 C -0.029 4.029 19 N -0.183 5.183 20 H 0.256 0.744 21 C -0.021 4.021 22 C -0.152 4.152 23 C -0.120 4.120 24 C -0.164 4.164 25 C -0.078 4.078 26 C -0.068 4.068 27 C 0.019 3.981 28 H 0.073 0.927 29 O -0.375 6.375 30 C -0.007 4.007 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.224 0.776 37 H 0.195 0.805 38 H 0.137 0.863 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.153 0.847 42 H 0.219 0.781 43 H 0.047 0.953 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.428 -19.006 14.080 23.777 hybrid contribution 1.852 0.778 0.063 2.010 sum 4.280 -18.228 14.143 23.465 Atomic orbital electron populations 1.70032 1.05290 1.25749 1.53129 1.25084 0.95296 0.98524 1.00510 0.86294 0.79115 0.83556 0.77740 1.21326 1.21471 1.20476 1.19132 0.92477 0.84589 1.42688 0.91622 1.44053 1.35920 1.01214 1.50038 1.20827 0.88677 0.98175 0.87770 1.22599 1.01054 0.94358 1.00640 1.20971 0.97478 0.88960 0.86460 0.89377 1.45901 1.08687 1.44536 1.37307 1.17175 0.84922 0.79490 0.81105 1.90772 1.22593 1.64774 1.63884 1.20213 0.92183 1.06604 1.03722 1.22092 0.99158 0.91899 0.89791 1.41491 1.06566 1.38016 1.32211 0.74439 1.18263 0.83158 1.00707 1.00001 1.19977 0.93957 1.00913 1.00313 1.20814 0.93006 0.99392 0.98756 1.20993 0.99963 0.98362 0.97046 1.20780 0.91972 0.97077 0.97994 1.18781 0.93233 0.98104 0.96680 1.22777 0.96042 0.83162 0.96084 0.92699 1.86497 1.50547 1.30637 1.69792 1.21528 0.98781 0.87449 0.92951 0.93423 0.88972 0.95783 0.92451 0.91825 0.77580 0.80466 0.86262 0.85719 0.85753 0.84697 0.78120 0.95315 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.92 11.20 55.49 0.62 -25.30 16 2 C 0.01 0.14 4.92 -17.43 -0.09 0.05 16 3 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.26 -6.93 9.58 -15.06 -0.14 -7.07 16 8 H 0.07 1.70 7.89 -52.48 -0.41 1.28 16 9 N -0.59 -14.43 2.99 -172.32 -0.52 -14.94 16 10 C 0.17 4.14 5.29 -3.71 -0.02 4.12 16 11 C -0.15 -2.92 5.65 -26.61 -0.15 -3.07 16 12 C 0.17 3.02 2.12 -67.89 -0.14 2.88 16 13 H 0.09 1.88 7.57 -51.93 -0.39 1.48 16 14 N -0.72 -10.95 4.91 -55.00 -0.27 -11.22 16 15 C 0.59 9.91 7.76 -12.75 -0.10 9.81 16 16 O -0.54 -11.29 15.82 5.22 0.08 -11.21 16 17 C -0.22 -2.99 6.27 -103.31 -0.65 -3.64 16 18 C 0.10 0.96 11.33 -16.61 -0.19 0.77 16 19 N -0.58 -4.71 5.99 -10.48 -0.06 -4.77 16 20 H 0.42 1.79 8.96 -40.82 -0.37 1.43 16 21 C 0.08 0.92 7.26 -83.97 -0.61 0.31 16 22 C -0.13 -1.20 10.07 -39.42 -0.40 -1.60 16 23 C -0.10 -0.92 10.01 -39.56 -0.40 -1.32 16 24 C -0.14 -1.55 10.03 -39.57 -0.40 -1.95 16 25 C -0.06 -0.81 9.85 -39.37 -0.39 -1.20 16 26 C -0.06 -0.88 6.27 -104.95 -0.66 -1.54 16 27 C 0.08 1.36 3.14 -26.61 -0.08 1.28 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 O -0.57 -8.46 13.16 -35.23 -0.46 -8.92 16 30 C 0.12 2.45 6.14 -3.71 -0.02 2.43 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 33 H 0.02 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.39 4.71 7.48 -40.82 -0.31 4.41 16 37 H 0.18 1.01 7.38 -52.49 -0.39 0.62 16 38 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 39 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.14 2.00 7.45 -52.49 -0.39 1.61 16 42 H 0.37 3.92 9.08 45.56 0.41 4.33 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 LS Contribution 363.68 15.07 5.48 5.48 Total: -1.00 -34.93 363.68 -9.67 -44.61 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -5.09 Total: 9.78 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -4.43 Total: 0.26 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.23 Total: -56.23 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.38 Total: -20.13 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.93 -9.67 -44.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090403654.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.857 kcal (2) G-P(sol) polarization free energy of solvation -34.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds