Wall clock time and date at job start Tue Mar 31 2020 06:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99707 * 2 1 4 4 H 1.48504 * 109.47268 * 270.00042 * 3 2 1 5 5 H 1.48502 * 109.47416 * 30.00370 * 3 2 1 6 6 H 1.48507 * 109.47127 * 150.00096 * 3 2 1 7 7 C 1.38805 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99878 * 163.12335 * 7 2 1 9 9 N 1.36942 * 120.00309 * 343.11515 * 7 2 1 10 10 C 1.46921 * 120.62733 * 331.88271 * 9 7 2 11 11 C 1.53191 * 108.77663 * 233.32958 * 10 9 7 12 12 C 1.53037 * 109.31329 * 305.36980 * 11 10 9 13 13 H 1.08994 * 109.46334 * 301.35557 * 12 11 10 14 14 N 1.46505 * 109.45562 * 181.38121 * 12 11 10 15 15 C 1.34775 * 119.99601 * 85.00601 * 14 12 11 16 16 O 1.21668 * 120.00410 * 359.97438 * 15 14 12 17 17 C 1.46911 * 120.00031 * 179.97438 * 15 14 12 18 18 C 1.36379 * 126.76540 * 0.02562 * 17 15 14 19 19 N 1.35478 * 109.76660 * 180.02562 * 18 17 15 20 20 H 0.97004 * 124.78538 * 179.97438 * 19 18 17 21 21 C 1.37964 * 110.42663 * 0.02562 * 19 18 17 22 22 C 1.39120 * 133.18721 * 180.02562 * 21 19 18 23 23 C 1.37775 * 119.92569 * 179.26133 * 22 21 19 24 24 C 1.38746 * 120.63261 * 0.57260 * 23 22 21 25 25 C 1.37757 * 120.30596 * 359.64552 * 24 23 22 26 26 C 1.39272 * 119.66814 * 359.97438 * 25 24 23 27 27 C 1.53042 * 109.53830 * 61.36726 * 12 11 10 28 28 H 1.08999 * 109.49699 * 58.61298 * 27 12 11 29 29 O 1.42900 * 109.49692 * 178.68507 * 27 12 11 30 30 C 1.46922 * 120.62727 * 151.60725 * 9 7 2 31 31 H 0.96995 * 120.00418 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.58788 * 353.12197 * 10 9 7 33 33 H 1.09011 * 109.58401 * 113.54526 * 10 9 7 34 34 H 1.09001 * 109.49176 * 65.32438 * 11 10 9 35 35 H 1.09004 * 109.49815 * 185.37965 * 11 10 9 36 36 H 0.97001 * 120.00368 * 264.99528 * 14 12 11 37 37 H 1.07997 * 125.11690 * 359.97438 * 18 17 15 38 38 H 1.08004 * 120.03785 * 359.97433 * 22 21 19 39 39 H 1.08001 * 119.67902 * 180.16993 * 23 22 21 40 40 H 1.08001 * 119.84667 * 179.62346 * 24 23 22 41 41 H 1.07997 * 120.16501 * 180.02562 * 25 24 23 42 42 H 0.96699 * 113.99954 * 179.97438 * 29 27 12 43 43 H 1.09003 * 109.58165 * 246.45378 * 30 9 7 44 44 H 1.08999 * 109.59419 * 6.87345 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0554 -1.2221 -0.2721 9 7 1.3699 -2.3627 0.3434 10 6 0.2248 -2.3413 1.2637 11 6 0.4922 -3.3261 2.4063 12 6 0.8038 -4.7060 1.8226 13 1 -0.0363 -5.0414 1.2146 14 7 1.0276 -5.6581 2.9135 15 6 -0.0195 -6.2809 3.4896 16 8 -1.1506 -6.0523 3.1042 17 6 0.2048 -7.2360 4.5831 18 6 1.4059 -7.5934 5.1212 19 7 1.2136 -8.4990 6.1104 20 1 1.9213 -8.8996 6.6392 21 6 -0.1306 -8.7718 6.2587 22 6 -0.8440 -9.6085 7.1111 23 6 -2.2185 -9.6602 7.0318 24 6 -2.9022 -8.8929 6.0998 25 6 -2.2135 -8.0616 5.2440 26 6 -0.8244 -7.9936 5.3184 27 6 2.0606 -4.6221 0.9534 28 1 2.8958 -4.2636 1.5550 29 8 2.3684 -5.9172 0.4336 30 6 1.8111 -3.6520 -0.2057 31 1 -0.4850 0.8400 0.0004 32 1 0.1001 -1.3370 1.6686 33 1 -0.6785 -2.6373 0.7301 34 1 1.3420 -2.9792 2.9941 35 1 -0.3892 -3.3910 3.0444 36 1 1.9294 -5.8402 3.2209 37 1 2.3660 -7.2126 4.8057 38 1 -0.3217 -10.2082 7.8418 39 1 -2.7684 -10.3091 7.6973 40 1 -3.9794 -8.9479 6.0447 41 1 -2.7480 -7.4651 4.5197 42 1 3.1551 -5.9387 -0.1283 43 1 1.0372 -4.0548 -0.8592 44 1 2.7328 -3.5126 -0.7705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090403654.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:37 Heat of formation + Delta-G solvation = -30.765603 kcal Electronic energy + Delta-G solvation = -27693.892221 eV Core-core repulsion = 23803.871920 eV Total energy + Delta-G solvation = -3890.020301 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.39057 -40.76690 -39.18070 -37.86943 -36.95963 -35.67812 -33.84426 -33.00050 -31.75839 -30.50523 -30.35489 -29.55756 -27.01664 -24.62655 -23.91347 -23.82225 -23.07886 -22.59406 -21.33454 -20.50757 -19.19259 -18.78942 -18.00325 -17.60659 -17.37716 -16.93056 -16.61722 -16.35323 -16.07554 -15.68314 -15.51397 -15.23724 -15.08033 -14.88145 -14.76800 -14.54895 -14.34430 -13.84258 -13.57545 -13.55318 -13.26113 -12.96878 -12.70261 -12.66264 -12.59275 -12.36392 -12.10301 -12.06807 -11.94762 -11.87006 -11.37578 -11.07767 -10.85159 -10.72614 -10.55527 -9.99510 -9.27631 -8.76367 -8.74170 -7.89457 -5.37817 0.03077 0.57992 1.04877 1.48580 1.50348 1.60084 2.05162 2.27094 2.45960 2.49942 2.98307 3.15134 3.28090 3.63860 3.74345 3.85299 3.89767 3.95108 4.08739 4.21064 4.24695 4.37953 4.40850 4.45980 4.55421 4.60836 4.70547 4.76362 4.78849 4.87031 4.99348 5.05498 5.13584 5.16731 5.37878 5.45135 5.51940 5.54920 5.60878 5.64450 5.65916 5.72121 6.13920 6.34491 6.57311 6.72737 6.92202 7.09989 7.40697 7.78362 8.31830 9.18010 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.022701 B = 0.002591 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.143281 B =10803.322470 C =11248.515954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.053 4.053 3 Si 0.972 3.028 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.263 1.263 7 C -0.264 4.264 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.181 3.819 11 C -0.128 4.128 12 C 0.172 3.828 13 H 0.048 0.952 14 N -0.699 5.699 15 C 0.581 3.419 16 O -0.599 6.599 17 C -0.275 4.275 18 C 0.150 3.850 19 N -0.558 5.558 20 H 0.442 0.558 21 C 0.074 3.926 22 C -0.118 4.118 23 C -0.105 4.105 24 C -0.141 4.141 25 C -0.105 4.105 26 C -0.096 4.096 27 C 0.105 3.895 28 H 0.079 0.921 29 O -0.570 6.570 30 C 0.116 3.884 31 H 0.250 0.750 32 H 0.062 0.938 33 H -0.013 1.013 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.412 0.588 37 H 0.224 0.776 38 H 0.158 0.842 39 H 0.160 0.840 40 H 0.138 0.862 41 H 0.100 0.900 42 H 0.396 0.604 43 H 0.008 0.992 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.821 -21.533 16.533 28.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.249 4.249 3 Si 0.800 3.200 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.188 1.188 7 C -0.394 4.394 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.055 3.945 11 C -0.168 4.168 12 C 0.067 3.933 13 H 0.067 0.933 14 N -0.350 5.350 15 C 0.372 3.628 16 O -0.481 6.481 17 C -0.286 4.286 18 C 0.015 3.985 19 N -0.161 5.161 20 H 0.284 0.716 21 C -0.032 4.032 22 C -0.138 4.138 23 C -0.124 4.124 24 C -0.159 4.159 25 C -0.124 4.124 26 C -0.100 4.100 27 C 0.044 3.956 28 H 0.097 0.903 29 O -0.377 6.377 30 C -0.011 4.011 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.005 0.995 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.249 0.751 37 H 0.240 0.760 38 H 0.176 0.824 39 H 0.177 0.823 40 H 0.156 0.844 41 H 0.118 0.882 42 H 0.246 0.754 43 H 0.026 0.974 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.534 -21.484 16.662 27.962 hybrid contribution 0.594 1.381 -0.727 1.670 sum 7.128 -20.103 15.934 26.624 Atomic orbital electron populations 1.70217 1.07053 1.26063 1.55097 1.25935 0.95983 1.01995 1.00939 0.85213 0.78162 0.79083 0.77573 1.21140 1.22307 1.18780 1.19578 0.93117 0.85356 1.41360 0.90315 1.44263 1.35592 1.02385 1.50506 1.20521 0.87761 0.97514 0.88718 1.22307 1.01116 0.94575 0.98806 1.20581 0.97218 0.88275 0.87218 0.93320 1.45565 1.09579 1.43560 1.36268 1.17730 0.84187 0.79492 0.81386 1.90741 1.24868 1.66733 1.65778 1.19994 0.94469 1.08899 1.05235 1.22624 0.99120 0.89303 0.87503 1.41490 1.06257 1.36849 1.31456 0.71604 1.18426 0.84143 1.00798 0.99800 1.20461 0.94020 0.99643 0.99637 1.21225 0.93539 0.99198 0.98473 1.21247 1.00822 0.97419 0.96450 1.20720 0.92814 0.99304 0.99551 1.19108 0.93557 0.99285 0.98067 1.22281 0.95676 0.83215 0.94424 0.90289 1.86471 1.52212 1.28721 1.70345 1.21718 0.98687 0.86337 0.94309 0.94069 0.91955 0.99496 0.90831 0.93028 0.75131 0.75973 0.82411 0.82290 0.84432 0.88218 0.75387 0.97414 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.57 11.20 21.65 0.24 -56.32 16 2 C -0.05 -2.95 4.92 84.86 0.42 -2.53 16 3 Si 0.97 44.13 29.59 68.60 2.03 46.16 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.26 -14.12 9.58 84.03 0.81 -13.32 16 8 H 0.08 3.94 7.89 -2.91 -0.02 3.92 16 9 N -0.60 -30.11 2.99 -699.09 -2.09 -32.21 16 10 C 0.18 9.28 5.29 86.36 0.46 9.73 16 11 C -0.13 -5.29 5.65 30.67 0.17 -5.12 16 12 C 0.17 6.42 2.12 45.02 0.10 6.52 16 13 H 0.05 2.22 7.57 -2.39 -0.02 2.20 16 14 N -0.70 -20.98 4.91 -446.15 -2.19 -23.17 16 15 C 0.58 20.45 7.76 86.51 0.67 21.12 16 16 O -0.60 -27.37 15.82 -4.25 -0.07 -27.44 16 17 C -0.28 -7.53 6.27 -19.01 -0.12 -7.65 16 18 C 0.15 2.26 11.33 83.70 0.95 3.21 16 19 N -0.56 -6.67 5.99 -187.08 -1.12 -7.79 16 20 H 0.44 1.31 8.96 -92.71 -0.83 0.48 16 21 C 0.07 1.42 7.26 38.91 0.28 1.70 16 22 C -0.12 -1.73 10.07 22.37 0.23 -1.50 16 23 C -0.11 -1.66 10.01 22.28 0.22 -1.44 16 24 C -0.14 -3.05 10.03 22.28 0.22 -2.83 16 25 C -0.11 -3.12 9.85 22.40 0.22 -2.90 16 26 C -0.10 -2.71 6.27 -20.08 -0.13 -2.84 16 27 C 0.11 3.38 3.14 30.67 0.10 3.48 16 28 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 29 O -0.57 -15.37 13.16 -148.98 -1.96 -17.33 16 30 C 0.12 4.69 6.14 86.36 0.53 5.22 16 31 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 32 H 0.06 3.54 6.07 -2.39 -0.01 3.53 16 33 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 34 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 35 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.41 8.66 7.48 -92.71 -0.69 7.97 16 37 H 0.22 1.19 7.38 -2.91 -0.02 1.17 16 38 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 39 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 40 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 41 H 0.10 3.51 7.45 -2.91 -0.02 3.49 16 42 H 0.40 6.81 9.08 -74.06 -0.67 6.14 16 43 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.08 2.84 7.93 -2.39 -0.02 2.82 16 Total: -1.00 -84.36 363.68 -1.17 -85.53 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: -1.13 Total: 21.72 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 5.12 Total: 10.85 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -5.16 Total: -119.49 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -2.03 Total: -44.77 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -84.36 -1.17 -85.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090403654.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.764 kcal (2) G-P(sol) polarization free energy of solvation -84.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds