Wall clock time and date at job start Tue Mar 31 2020 06:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00250 * 2 1 4 4 H 1.48503 * 109.47160 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47222 * 300.00057 * 3 2 1 6 6 H 1.48506 * 109.46952 * 59.99886 * 3 2 1 7 7 C 1.38819 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99639 * 197.37039 * 7 2 1 9 9 N 1.36930 * 119.99684 * 17.36341 * 7 2 1 10 10 C 1.46923 * 120.63522 * 27.67819 * 9 7 2 11 11 C 1.53187 * 108.77896 * 126.40668 * 10 9 7 12 12 C 1.53048 * 109.31248 * 54.63901 * 11 10 9 13 13 H 1.08989 * 109.45921 * 58.64056 * 12 11 10 14 14 N 1.46500 * 109.45842 * 178.61332 * 12 11 10 15 15 C 1.34768 * 120.00343 * 275.30002 * 14 12 11 16 16 O 1.21679 * 119.99919 * 359.72467 * 15 14 12 17 17 C 1.46908 * 120.00254 * 179.72667 * 15 14 12 18 18 C 1.36370 * 126.77119 * 0.02562 * 17 15 14 19 19 N 1.35467 * 109.77186 * 179.97438 * 18 17 15 20 20 H 0.97002 * 124.78502 * 179.97438 * 19 18 17 21 21 C 1.37963 * 110.42646 * 0.02562 * 19 18 17 22 22 C 1.39121 * 133.18567 * 180.02562 * 21 19 18 23 23 C 1.37761 * 119.92723 * 179.97438 * 22 21 19 24 24 C 1.38757 * 120.63472 * 359.96889 * 23 22 21 25 25 C 1.37746 * 120.30380 * 0.02815 * 24 23 22 26 26 C 1.39278 * 119.67025 * 359.73437 * 25 24 23 27 27 C 1.53038 * 109.52279 * 298.62534 * 12 11 10 28 28 H 1.09003 * 109.50093 * 301.42057 * 27 12 11 29 29 O 1.42898 * 109.49568 * 181.32273 * 27 12 11 30 30 C 1.46929 * 120.62998 * 207.69212 * 9 7 2 31 31 H 0.97003 * 119.99949 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.58421 * 6.62011 * 10 9 7 33 33 H 1.08997 * 109.58625 * 246.19891 * 10 9 7 34 34 H 1.09002 * 109.50098 * 294.68730 * 11 10 9 35 35 H 1.08998 * 109.52747 * 174.60564 * 11 10 9 36 36 H 0.97003 * 119.99582 * 95.03108 * 14 12 11 37 37 H 1.08004 * 125.11348 * 359.97438 * 18 17 15 38 38 H 1.07997 * 120.03746 * 359.97211 * 22 21 19 39 39 H 1.08002 * 119.68439 * 179.97438 * 23 22 21 40 40 H 1.08003 * 119.84385 * 180.02562 * 24 23 22 41 41 H 1.07995 * 120.16865 * 180.02562 * 25 24 23 42 42 H 0.96708 * 114.00165 * 180.02562 * 29 27 12 43 43 H 1.09000 * 109.58778 * 353.38090 * 30 9 7 44 44 H 1.08998 * 109.58567 * 113.66035 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0533 -1.2236 0.2787 9 7 1.3723 -2.3608 -0.3550 10 6 0.2279 -2.3338 -1.2759 11 6 0.5008 -3.3033 -2.4302 12 6 0.8185 -4.6889 -1.8631 13 1 -0.0206 -5.0354 -1.2599 14 7 1.0475 -5.6265 -2.9652 15 6 0.0034 -6.2425 -3.5539 16 8 -1.1292 -6.0238 -3.1667 17 6 0.2327 -7.1782 -4.6630 18 6 1.4358 -7.5236 -5.2042 19 7 1.2480 -8.4124 -6.2091 20 1 1.9578 -8.8018 -6.7434 21 6 -0.0953 -8.6848 -6.3662 22 6 -0.8046 -9.5088 -7.2343 23 6 -2.1780 -9.5759 -7.1500 24 6 -2.8657 -8.8284 -6.2047 25 6 -2.1814 -8.0068 -5.3363 26 6 -0.7924 -7.9331 -5.4070 27 6 2.0742 -4.6093 -0.9920 28 1 2.9080 -4.2389 -1.5885 29 8 2.3880 -5.9090 -0.4877 30 6 1.8191 -3.6548 0.1788 31 1 -0.4850 0.8401 -0.0004 32 1 0.0987 -1.3253 -1.6687 33 1 -0.6744 -2.6404 -0.7467 34 1 1.3495 -2.9454 -3.0130 35 1 -0.3796 -3.3652 -3.0699 36 1 1.9505 -5.8009 -3.2737 37 1 2.3942 -7.1454 -4.8803 38 1 -0.2791 -10.0951 -7.9735 39 1 -2.7247 -10.2165 -7.8262 40 1 -3.9425 -8.8911 -6.1496 41 1 -2.7188 -7.4263 -4.6011 42 1 3.1745 -5.9335 0.0745 43 1 2.7398 -3.5179 0.7459 44 1 1.0477 -4.0680 0.8286 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090403655.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:43 Heat of formation + Delta-G solvation = -3.664788 kcal Electronic energy + Delta-G solvation = -27695.161721 eV Core-core repulsion = 23806.316600 eV Total energy + Delta-G solvation = -3888.845121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.56384 -39.37939 -37.71616 -37.07783 -35.38436 -34.18509 -32.32359 -31.77576 -30.16250 -29.66602 -29.03436 -28.26347 -25.21851 -23.20885 -23.10975 -22.25285 -21.93047 -21.40050 -19.81088 -19.18933 -18.28014 -17.11372 -16.72970 -16.47918 -16.18793 -15.69832 -15.47028 -15.03215 -14.80039 -14.27524 -14.03690 -13.97080 -13.90972 -13.79375 -13.38338 -13.10627 -12.84388 -12.67835 -12.23288 -12.01997 -11.87826 -11.81142 -11.54088 -11.13140 -11.08298 -10.88407 -10.63248 -10.28749 -10.23581 -9.93652 -9.84466 -9.75775 -9.68261 -9.37061 -8.68716 -8.48175 -8.42744 -7.90574 -6.75898 -5.83646 -3.27617 0.85688 1.41025 1.97254 2.75967 3.34298 3.42148 3.44097 3.50349 3.53212 3.91374 4.38550 4.47768 4.54202 4.56656 4.84574 4.94133 5.03343 5.29905 5.32395 5.35957 5.40393 5.50386 5.52390 5.59336 5.65120 5.80442 5.95492 6.01604 6.16720 6.24147 6.34525 6.38307 6.49577 6.50689 6.55062 6.60489 6.71790 6.80469 6.94012 6.95818 7.14846 7.32528 7.63740 7.74344 7.88688 7.93870 8.38892 8.62502 9.14437 9.77014 10.33038 11.24830 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.022558 B = 0.002595 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.942177 B =10786.781931 C =11226.644181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.004 3.996 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.258 4.258 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.146 4.146 12 C 0.165 3.835 13 H 0.088 0.912 14 N -0.715 5.715 15 C 0.585 3.415 16 O -0.542 6.542 17 C -0.216 4.216 18 C 0.103 3.897 19 N -0.581 5.581 20 H 0.418 0.582 21 C 0.084 3.916 22 C -0.131 4.131 23 C -0.101 4.101 24 C -0.145 4.145 25 C -0.060 4.060 26 C -0.064 4.064 27 C 0.080 3.920 28 H 0.055 0.945 29 O -0.570 6.570 30 C 0.121 3.879 31 H 0.255 0.745 32 H 0.093 0.907 33 H 0.024 0.976 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.391 0.609 37 H 0.178 0.822 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.135 0.865 42 H 0.373 0.627 43 H 0.059 0.941 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.913 -18.976 -14.195 24.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.388 4.388 8 H 0.085 0.915 9 N -0.313 5.313 10 C 0.045 3.955 11 C -0.187 4.187 12 C 0.061 3.939 13 H 0.106 0.894 14 N -0.364 5.364 15 C 0.373 3.627 16 O -0.420 6.420 17 C -0.227 4.227 18 C -0.029 4.029 19 N -0.183 5.183 20 H 0.256 0.744 21 C -0.021 4.021 22 C -0.152 4.152 23 C -0.120 4.120 24 C -0.164 4.164 25 C -0.078 4.078 26 C -0.068 4.068 27 C 0.019 3.981 28 H 0.073 0.927 29 O -0.375 6.375 30 C -0.007 4.007 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.224 0.776 37 H 0.195 0.805 38 H 0.137 0.863 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.153 0.847 42 H 0.219 0.781 43 H 0.077 0.923 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.541 -18.863 -14.283 23.797 hybrid contribution 1.845 0.791 -0.082 2.009 sum 4.386 -18.073 -14.365 23.499 Atomic orbital electron populations 1.70047 1.05286 1.25620 1.53212 1.25073 0.95293 0.98523 1.00593 0.86219 0.79279 0.83857 0.77348 1.20264 1.21470 1.21661 1.19191 0.92687 0.84675 1.42232 0.91525 1.44058 1.35910 1.01002 1.50281 1.20834 0.88662 0.98416 0.87602 1.22603 1.01049 0.94301 1.00712 1.20971 0.97451 0.89237 0.86217 0.89378 1.45897 1.08703 1.45456 1.36365 1.17176 0.84941 0.79368 0.81211 1.90775 1.22431 1.64401 1.64423 1.20210 0.92207 1.06880 1.03426 1.22088 0.99144 0.92116 0.89593 1.41488 1.06569 1.39018 1.31199 0.74440 1.18263 0.83181 1.01016 0.99676 1.19972 0.94018 1.01017 1.00149 1.20813 0.93006 0.99447 0.98704 1.20993 0.99968 0.98496 0.96907 1.20778 0.91990 0.96999 0.98056 1.18785 0.93249 0.98371 0.96392 1.22775 0.96012 0.83049 0.96217 0.92687 1.86499 1.50571 1.30271 1.70126 1.21526 0.98762 0.87460 0.92964 0.93483 0.88896 0.95785 0.92452 0.91823 0.77580 0.80466 0.86262 0.85718 0.85751 0.84698 0.78118 0.92251 0.95286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.90 11.19 55.49 0.62 -25.28 16 2 C 0.00 0.12 4.91 -17.43 -0.09 0.03 16 3 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.26 -6.90 9.59 -15.06 -0.14 -7.04 16 8 H 0.07 1.73 7.89 -52.48 -0.41 1.31 16 9 N -0.59 -14.42 2.99 -172.32 -0.52 -14.94 16 10 C 0.17 4.12 5.31 -3.71 -0.02 4.10 16 11 C -0.15 -2.92 5.65 -26.61 -0.15 -3.07 16 12 C 0.17 3.02 2.12 -67.89 -0.14 2.88 16 13 H 0.09 1.88 7.58 -51.94 -0.39 1.48 16 14 N -0.72 -10.94 4.91 -55.00 -0.27 -11.21 16 15 C 0.59 9.90 7.76 -12.76 -0.10 9.80 16 16 O -0.54 -11.29 15.82 5.21 0.08 -11.20 16 17 C -0.22 -2.99 6.27 -103.31 -0.65 -3.64 16 18 C 0.10 0.96 11.33 -16.62 -0.19 0.77 16 19 N -0.58 -4.70 5.99 -10.48 -0.06 -4.77 16 20 H 0.42 1.79 8.96 -40.82 -0.37 1.43 16 21 C 0.08 0.91 7.26 -83.97 -0.61 0.31 16 22 C -0.13 -1.20 10.07 -39.43 -0.40 -1.60 16 23 C -0.10 -0.92 10.01 -39.56 -0.40 -1.32 16 24 C -0.14 -1.55 10.03 -39.57 -0.40 -1.95 16 25 C -0.06 -0.81 9.85 -39.37 -0.39 -1.20 16 26 C -0.06 -0.88 6.27 -104.95 -0.66 -1.54 16 27 C 0.08 1.36 3.14 -26.61 -0.08 1.28 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 O -0.57 -8.45 13.16 -35.23 -0.46 -8.91 16 30 C 0.12 2.45 6.14 -3.71 -0.02 2.43 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 32 H 0.09 2.49 6.04 -51.93 -0.31 2.17 16 33 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.39 4.71 7.48 -40.82 -0.31 4.40 16 37 H 0.18 1.00 7.38 -52.48 -0.39 0.62 16 38 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 41 H 0.14 2.00 7.45 -52.49 -0.39 1.61 16 42 H 0.37 3.91 9.08 45.56 0.41 4.32 16 43 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 363.65 15.07 5.48 5.48 Total: -1.00 -34.94 363.65 -9.67 -44.61 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -5.09 Total: 9.73 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -4.43 Total: 0.24 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.23 Total: -56.19 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.38 Total: -20.12 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.94 -9.67 -44.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090403655.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.946 kcal (2) G-P(sol) polarization free energy of solvation -34.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds