Wall clock time and date at job start Tue Mar 31 2020 06:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99836 * 2 1 4 4 H 1.48495 * 109.46703 * 269.99768 * 3 2 1 5 5 H 1.48497 * 109.47476 * 29.99990 * 3 2 1 6 6 H 1.48505 * 109.47110 * 150.00210 * 3 2 1 7 7 C 1.38816 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99940 * 197.36097 * 7 2 1 9 9 N 1.36940 * 119.99898 * 17.36756 * 7 2 1 10 10 C 1.46919 * 120.62877 * 207.65787 * 9 7 2 11 11 C 1.53190 * 108.77084 * 233.63926 * 10 9 7 12 12 C 1.53042 * 109.30888 * 305.34864 * 11 10 9 13 13 H 1.09002 * 109.46324 * 301.36745 * 12 11 10 14 14 N 1.46501 * 109.46130 * 181.39562 * 12 11 10 15 15 C 1.34781 * 120.00192 * 84.97128 * 14 12 11 16 16 O 1.21671 * 119.99496 * 0.02562 * 15 14 12 17 17 C 1.46903 * 120.00124 * 180.02562 * 15 14 12 18 18 C 1.36376 * 126.77243 * 0.03040 * 17 15 14 19 19 N 1.35469 * 109.77129 * 179.97438 * 18 17 15 20 20 H 0.97005 * 124.78370 * 180.02562 * 19 18 17 21 21 C 1.37959 * 110.42785 * 359.97438 * 19 18 17 22 22 C 1.39118 * 133.19208 * 180.02562 * 21 19 18 23 23 C 1.37771 * 119.92950 * 179.22046 * 22 21 19 24 24 C 1.38758 * 120.63411 * 0.66127 * 23 22 21 25 25 C 1.37755 * 120.29682 * 359.55859 * 24 23 22 26 26 C 1.39275 * 119.67386 * 0.02562 * 25 24 23 27 27 C 1.53042 * 109.52733 * 61.38119 * 12 11 10 28 28 H 1.09004 * 109.49446 * 178.64207 * 27 12 11 29 29 O 1.42898 * 109.49644 * 58.58114 * 27 12 11 30 30 C 1.46920 * 120.63154 * 27.68306 * 9 7 2 31 31 H 0.96994 * 119.99983 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.59064 * 353.42400 * 10 9 7 33 33 H 1.09003 * 109.58705 * 113.83952 * 10 9 7 34 34 H 1.08992 * 109.49238 * 185.40227 * 11 10 9 35 35 H 1.09000 * 109.50644 * 65.29624 * 11 10 9 36 36 H 0.97002 * 120.00204 * 265.24448 * 14 12 11 37 37 H 1.07998 * 125.10874 * 359.97174 * 18 17 15 38 38 H 1.08005 * 120.03710 * 359.97438 * 22 21 19 39 39 H 1.08006 * 119.68206 * 180.21997 * 23 22 21 40 40 H 1.07995 * 119.84931 * 179.57513 * 24 23 22 41 41 H 1.08004 * 120.15753 * 180.02562 * 25 24 23 42 42 H 0.96702 * 113.99627 * 179.97438 * 29 27 12 43 43 H 1.09002 * 109.58966 * 6.58546 * 30 9 7 44 44 H 1.09002 * 109.70563 * 246.23113 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0534 -1.2234 0.2796 9 7 1.3723 -2.3612 -0.3529 10 6 1.8196 -3.6547 0.1813 11 6 2.0754 -4.6095 -0.9889 12 6 0.8198 -4.6899 -1.8603 13 1 -0.0193 -5.0367 -1.2571 14 7 1.0495 -5.6279 -2.9620 15 6 0.8490 -6.9477 -2.7763 16 8 0.4768 -7.3600 -1.6937 17 6 1.0798 -7.8883 -3.8808 18 6 1.4953 -7.5797 -5.1425 19 7 1.5953 -8.7107 -5.8815 20 1 1.8733 -8.7421 -6.8103 21 6 1.2470 -9.8116 -5.1265 22 6 1.1822 -11.1736 -5.4024 23 6 0.8044 -12.0576 -4.4156 24 6 0.4730 -11.6023 -3.1474 25 6 0.5266 -10.2570 -2.8561 26 6 0.9152 -9.3530 -3.8417 27 6 0.5016 -3.3047 -2.4280 28 1 -0.3787 -3.3673 -3.0678 29 8 1.6142 -2.8353 -3.1920 30 6 0.2281 -2.3350 -1.2741 31 1 -0.4850 0.8400 -0.0004 32 1 2.7401 -3.5172 0.7487 33 1 1.0472 -4.0692 0.8293 34 1 2.3151 -5.6006 -0.6040 35 1 2.9090 -4.2390 -1.5855 36 1 1.3496 -5.2995 -3.8239 37 1 1.7121 -6.5836 -5.4989 38 1 1.4395 -11.5388 -6.3857 39 1 0.7589 -13.1146 -4.6332 40 1 0.1720 -12.3058 -2.3854 41 1 0.2686 -9.9051 -1.8681 42 1 1.4818 -1.9608 -3.5830 43 1 0.0985 -1.3266 -1.6673 44 1 -0.6756 -2.6403 -0.7465 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090403656.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:47 Heat of formation + Delta-G solvation = -2.622671 kcal Electronic energy + Delta-G solvation = -27802.844742 eV Core-core repulsion = 23914.044810 eV Total energy + Delta-G solvation = -3888.799932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.59154 -39.39178 -37.72012 -37.10570 -34.77586 -34.18455 -32.39055 -31.85878 -29.86154 -29.65745 -29.08983 -28.51146 -25.18856 -23.21832 -23.13415 -22.20830 -21.94730 -21.38686 -19.72425 -19.14897 -18.28764 -17.23583 -16.69453 -16.27731 -15.81245 -15.64992 -15.31816 -15.09852 -14.83271 -14.30180 -14.12494 -13.97218 -13.87343 -13.73816 -13.44113 -13.14326 -12.87093 -12.67739 -12.08248 -11.96190 -11.91101 -11.83194 -11.24607 -11.14645 -11.10623 -10.81032 -10.55530 -10.44978 -10.14883 -10.01872 -9.87436 -9.75034 -9.53954 -9.15839 -8.63445 -8.50916 -8.47666 -7.93494 -6.67098 -5.80448 -3.20801 0.82756 1.38047 1.93812 2.73916 3.36133 3.44196 3.45841 3.47200 3.51293 3.87374 4.46524 4.48731 4.54076 4.78738 4.87986 4.91239 5.00967 5.27892 5.33408 5.37379 5.42711 5.49140 5.49847 5.61757 5.65655 5.92371 6.00481 6.08052 6.21357 6.25747 6.32024 6.35005 6.46771 6.50890 6.54908 6.62323 6.83565 6.90880 6.93249 7.03175 7.12741 7.20365 7.45186 7.78789 7.89349 8.24846 8.43992 8.58051 9.19183 9.82437 10.39439 11.28348 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.032397 B = 0.002500 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.057229 B =11196.807227 C =11638.532755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.002 4.002 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.241 4.241 8 H 0.066 0.934 9 N -0.583 5.583 10 C 0.148 3.852 11 C -0.136 4.136 12 C 0.165 3.835 13 H 0.091 0.909 14 N -0.718 5.718 15 C 0.583 3.417 16 O -0.545 6.545 17 C -0.219 4.219 18 C 0.104 3.896 19 N -0.581 5.581 20 H 0.419 0.581 21 C 0.083 3.917 22 C -0.130 4.130 23 C -0.101 4.101 24 C -0.144 4.144 25 C -0.060 4.060 26 C -0.063 4.063 27 C 0.073 3.927 28 H 0.043 0.957 29 O -0.560 6.560 30 C 0.145 3.855 31 H 0.253 0.747 32 H 0.057 0.943 33 H 0.020 0.980 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.397 0.603 37 H 0.180 0.820 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.135 0.865 42 H 0.374 0.626 43 H 0.095 0.905 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.524 -18.829 -15.179 24.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.200 4.200 3 Si 0.733 3.267 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.371 4.371 8 H 0.084 0.916 9 N -0.305 5.305 10 C 0.021 3.979 11 C -0.176 4.176 12 C 0.061 3.939 13 H 0.109 0.891 14 N -0.367 5.367 15 C 0.371 3.629 16 O -0.424 6.424 17 C -0.230 4.230 18 C -0.028 4.028 19 N -0.182 5.182 20 H 0.256 0.744 21 C -0.022 4.022 22 C -0.151 4.151 23 C -0.120 4.120 24 C -0.164 4.164 25 C -0.079 4.079 26 C -0.068 4.068 27 C 0.012 3.988 28 H 0.061 0.939 29 O -0.366 6.366 30 C 0.018 3.982 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.231 0.769 37 H 0.197 0.803 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.153 0.847 42 H 0.221 0.779 43 H 0.113 0.887 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.433 -19.531 -14.278 24.236 hybrid contribution 0.441 1.668 -1.156 2.077 sum 1.874 -17.864 -15.434 23.682 Atomic orbital electron populations 1.70021 1.05189 1.25457 1.54605 1.25015 0.95290 0.98355 1.01331 0.86267 0.79126 0.83656 0.77608 1.21556 1.21895 1.20485 1.19204 0.92725 0.84743 1.40389 0.91645 1.43881 1.35399 1.01625 1.49617 1.20901 0.97851 0.86381 0.92772 1.22298 0.97582 0.99327 0.98415 1.20978 0.99253 0.86297 0.87363 0.89133 1.46031 1.68863 1.05980 1.15863 1.17239 0.77221 0.81645 0.86793 1.90762 1.47371 1.78002 1.26228 1.20204 1.15524 0.92860 0.94427 1.22136 0.98477 0.91132 0.91028 1.41504 1.58377 1.04908 1.13438 0.74392 1.18266 1.03623 0.88886 0.91391 1.19983 1.05872 0.89099 1.00144 1.20818 0.99317 0.98965 0.92894 1.20994 1.03037 0.95307 0.97013 1.20768 0.96254 0.91833 0.99037 1.18780 1.03233 0.91682 0.93079 1.22846 0.87576 0.94102 0.94280 0.93918 1.86341 1.42008 1.38170 1.70046 1.21431 0.89682 0.98460 0.88633 0.93670 0.92496 0.96201 0.92807 0.91304 0.76911 0.80340 0.86242 0.85710 0.85761 0.84735 0.77911 0.88664 0.95442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.67 11.19 55.49 0.62 -25.05 16 2 C 0.00 -0.06 4.91 -17.43 -0.09 -0.14 16 3 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.24 -6.51 9.59 -15.06 -0.14 -6.65 16 8 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 9 N -0.58 -14.38 2.94 -172.32 -0.51 -14.88 16 10 C 0.15 3.24 6.52 -3.72 -0.02 3.21 16 11 C -0.14 -2.62 5.51 -26.61 -0.15 -2.77 16 12 C 0.16 2.96 2.20 -67.89 -0.15 2.81 16 13 H 0.09 1.79 7.58 -51.93 -0.39 1.39 16 14 N -0.72 -10.81 5.04 -55.00 -0.28 -11.09 16 15 C 0.58 9.48 7.76 -12.75 -0.10 9.38 16 16 O -0.55 -10.80 15.82 5.21 0.08 -10.71 16 17 C -0.22 -2.94 6.27 -103.31 -0.65 -3.59 16 18 C 0.10 0.96 11.33 -16.62 -0.19 0.77 16 19 N -0.58 -4.60 5.99 -10.49 -0.06 -4.66 16 20 H 0.42 1.75 8.96 -40.82 -0.37 1.39 16 21 C 0.08 0.89 7.26 -83.97 -0.61 0.28 16 22 C -0.13 -1.16 10.07 -39.43 -0.40 -1.56 16 23 C -0.10 -0.89 10.01 -39.56 -0.40 -1.28 16 24 C -0.14 -1.49 10.03 -39.57 -0.40 -1.88 16 25 C -0.06 -0.79 9.85 -39.37 -0.39 -1.18 16 26 C -0.06 -0.85 6.27 -104.95 -0.66 -1.51 16 27 C 0.07 1.32 3.38 -26.61 -0.09 1.23 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 O -0.56 -9.62 12.08 -35.23 -0.43 -10.05 16 30 C 0.15 3.29 4.95 -3.72 -0.02 3.27 16 31 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.06 1.23 7.93 -51.93 -0.41 0.81 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.38 7.61 -51.93 -0.40 0.99 16 36 H 0.40 4.99 7.14 -40.82 -0.29 4.69 16 37 H 0.18 1.04 7.38 -52.49 -0.39 0.65 16 38 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 39 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 40 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 41 H 0.13 1.90 7.45 -52.48 -0.39 1.51 16 42 H 0.37 5.57 9.08 45.56 0.41 5.99 16 43 H 0.10 2.36 6.04 -51.93 -0.31 2.05 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 361.97 15.07 5.45 5.45 Total: -1.00 -33.92 361.97 -9.63 -43.55 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -5.04 Total: 10.70 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -4.44 Total: 0.40 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: -0.22 Total: -55.67 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.34 Total: -20.76 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.92 -9.63 -43.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090403656.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.927 kcal (2) G-P(sol) polarization free energy of solvation -33.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds