Wall clock time and date at job start Tue Mar 31 2020 06:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00068 * 2 1 4 4 H 1.48501 * 109.46669 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46948 * 119.99806 * 3 2 1 6 6 H 1.48498 * 109.47140 * 240.00458 * 3 2 1 7 7 C 1.38811 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00157 * 162.76785 * 7 2 1 9 9 N 1.36943 * 119.99955 * 342.76805 * 7 2 1 10 10 C 1.46923 * 120.62930 * 332.17173 * 9 7 2 11 11 C 1.52755 * 109.00900 * 233.58508 * 10 9 7 12 12 C 1.53044 * 109.38132 * 305.58408 * 11 10 9 13 13 H 1.08998 * 109.46165 * 301.22234 * 12 11 10 14 14 N 1.46504 * 109.45065 * 181.25215 * 12 11 10 15 15 C 1.34770 * 119.99766 * 84.94197 * 14 12 11 16 16 O 1.21582 * 120.00031 * 0.02562 * 15 14 12 17 17 C 1.47654 * 120.00119 * 180.02562 * 15 14 12 18 18 C 1.40214 * 119.97121 * 359.97438 * 17 15 14 19 19 C 1.36309 * 120.66447 * 180.02562 * 18 17 15 20 20 C 1.39374 * 120.24094 * 359.97438 * 19 18 17 21 21 N 1.37397 * 133.24200 * 180.02562 * 20 19 18 22 22 H 0.96998 * 125.01845 * 359.97438 * 21 20 19 23 23 C 1.36865 * 109.97455 * 179.97438 * 21 20 19 24 24 C 1.34189 * 109.96035 * 0.02562 * 23 21 20 25 25 C 1.40867 * 119.64070 * 0.02562 * 20 19 18 26 26 C 1.39152 * 119.97561 * 179.72692 * 17 15 14 27 27 C 1.53046 * 109.53404 * 61.24392 * 12 11 10 28 28 H 1.08999 * 109.49861 * 58.58399 * 27 12 11 29 29 O 1.42898 * 109.49343 * 178.68351 * 27 12 11 30 30 C 1.46927 * 120.63120 * 152.45061 * 9 7 2 31 31 H 0.96995 * 120.00322 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.58782 * 353.41781 * 10 9 7 33 33 H 1.09006 * 109.58879 * 113.84066 * 10 9 7 34 34 H 1.09007 * 109.56573 * 185.55521 * 11 10 9 35 35 H 1.09002 * 109.36461 * 65.49364 * 11 10 9 36 36 H 0.97004 * 120.00075 * 264.94533 * 14 12 11 37 37 H 1.07998 * 119.66580 * 0.02857 * 18 17 15 38 38 H 1.08009 * 119.87988 * 180.02562 * 19 18 17 39 39 H 1.08007 * 125.01880 * 179.97438 * 23 21 20 40 40 H 1.08003 * 126.53972 * 180.02562 * 24 23 21 41 41 H 1.07999 * 120.30312 * 359.97438 * 26 17 15 42 42 H 0.96702 * 113.99942 * 179.83960 * 29 27 12 43 43 H 1.09004 * 109.58525 * 246.16048 * 30 9 7 44 44 H 1.08995 * 109.58430 * 6.43945 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7464 0.0006 5 1 3.1038 1.6964 1.2125 6 1 3.1038 1.6964 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0539 -1.2230 -0.2776 9 7 1.3717 -2.3616 0.3503 10 6 0.2275 -2.3368 1.2716 11 6 0.4938 -3.3061 2.4218 12 6 0.8147 -4.6910 1.8549 13 1 -0.0220 -5.0381 1.2488 14 7 1.0410 -5.6289 2.9574 15 6 -0.0041 -6.2500 3.5390 16 8 -1.1347 -6.0322 3.1484 17 6 0.2238 -7.1949 4.6505 18 6 1.5280 -7.4460 5.1000 19 6 1.7546 -8.3160 6.1246 20 6 0.6881 -8.9685 6.7404 21 7 0.6069 -9.8751 7.7697 22 1 1.3644 -10.2250 8.2642 23 6 -0.7006 -10.2116 7.9942 24 6 -1.4968 -9.5519 7.1390 25 6 -0.6269 -8.7247 6.2979 26 6 -0.8562 -7.8315 5.2543 27 6 2.0734 -4.6099 0.9881 28 1 2.9048 -4.2393 1.5876 29 8 2.3898 -5.9091 0.4841 30 6 1.8216 -3.6548 -0.1828 31 1 -0.4850 0.8400 0.0004 32 1 0.0986 -1.3293 1.6671 33 1 -0.6750 -2.6418 0.7418 34 1 -0.3892 -3.3692 3.0579 35 1 1.3401 -2.9478 3.0078 36 1 1.9431 -5.8029 3.2688 37 1 2.3612 -6.9451 4.6298 38 1 2.7644 -8.4997 6.4611 39 1 -1.0411 -10.9062 8.7479 40 1 -2.5733 -9.6174 7.0817 41 1 -1.8627 -7.6377 4.9142 42 1 3.1770 -5.9323 -0.0771 43 1 1.0518 -4.0695 -0.8336 44 1 2.7427 -3.5162 -0.7487 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090536077.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:47 Heat of formation + Delta-G solvation = -0.756057 kcal Electronic energy + Delta-G solvation = -27505.994392 eV Core-core repulsion = 23617.275403 eV Total energy + Delta-G solvation = -3888.718989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.50169 -39.73638 -38.03541 -36.56208 -35.37601 -34.27817 -32.24399 -31.95025 -30.42231 -29.47451 -29.01516 -28.35970 -25.29554 -23.64721 -22.54575 -22.26840 -21.70895 -21.06202 -20.03502 -19.42172 -18.37043 -17.46831 -16.91046 -16.58668 -16.25357 -15.72769 -14.97045 -14.84476 -14.57864 -14.33245 -14.23627 -13.97403 -13.89078 -13.57611 -13.34125 -13.19264 -12.90830 -12.80535 -12.51159 -12.24763 -12.08249 -11.62827 -11.52896 -11.10569 -11.07010 -10.84216 -10.63468 -10.31079 -10.23728 -10.04271 -9.92156 -9.78349 -9.67468 -9.38320 -8.71764 -8.48793 -8.37015 -8.00728 -6.74755 -5.82431 -3.26522 0.86364 1.06982 2.44253 2.80045 3.07407 3.36232 3.42823 3.43302 3.45645 3.94818 4.39213 4.43833 4.54163 4.56201 4.79758 4.90833 5.04743 5.20776 5.32019 5.32982 5.35130 5.47892 5.52504 5.60220 5.69355 5.81081 5.85438 6.01519 6.11906 6.17861 6.28076 6.37494 6.40556 6.46601 6.51852 6.59299 6.72172 6.81273 6.83767 6.95649 7.17615 7.33235 7.64107 7.74810 7.84811 7.95445 8.40140 8.55405 9.15547 9.78115 10.34098 11.26176 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.024958 B = 0.002420 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.615803 B =11565.260168 C =11827.972288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.146 4.146 12 C 0.163 3.837 13 H 0.088 0.912 14 N -0.712 5.712 15 C 0.559 3.441 16 O -0.543 6.543 17 C -0.158 4.158 18 C -0.064 4.064 19 C -0.138 4.138 20 C 0.113 3.887 21 N -0.595 5.595 22 H 0.416 0.584 23 C 0.042 3.958 24 C -0.192 4.192 25 C -0.123 4.123 26 C -0.002 4.002 27 C 0.080 3.920 28 H 0.056 0.944 29 O -0.570 6.570 30 C 0.121 3.879 31 H 0.256 0.744 32 H 0.093 0.907 33 H 0.024 0.976 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.394 0.606 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.171 0.829 40 H 0.149 0.851 41 H 0.138 0.862 42 H 0.373 0.627 43 H 0.029 0.971 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.176 -20.248 15.653 25.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.216 1.216 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.389 4.389 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.187 4.187 12 C 0.059 3.941 13 H 0.107 0.893 14 N -0.362 5.362 15 C 0.347 3.653 16 O -0.421 6.421 17 C -0.162 4.162 18 C -0.084 4.084 19 C -0.159 4.159 20 C 0.004 3.996 21 N -0.197 5.197 22 H 0.252 0.748 23 C -0.083 4.083 24 C -0.217 4.217 25 C -0.128 4.128 26 C -0.022 4.022 27 C 0.019 3.981 28 H 0.074 0.926 29 O -0.375 6.375 30 C -0.007 4.007 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.229 0.771 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.188 0.812 40 H 0.167 0.833 41 H 0.156 0.844 42 H 0.219 0.781 43 H 0.047 0.953 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.778 -20.150 15.760 25.731 hybrid contribution 1.781 0.737 0.127 1.932 sum 4.560 -19.413 15.886 25.495 Atomic orbital electron populations 1.70024 1.05281 1.25851 1.53051 1.25066 0.95295 0.98508 1.00549 0.86348 0.78908 0.83242 0.78112 1.21563 1.20983 1.20841 1.19108 0.92618 0.84664 1.42527 0.91612 1.44024 1.35835 1.01007 1.50350 1.20747 0.88723 0.98409 0.87666 1.22535 1.01092 0.94272 1.00772 1.21007 0.97497 0.89290 0.86267 0.89345 1.45982 1.09103 1.44873 1.36199 1.18111 0.84980 0.80100 0.82135 1.90773 1.22566 1.64576 1.64204 1.19728 0.93790 1.02541 1.00167 1.20664 0.95972 0.96431 0.95332 1.19630 0.96735 1.00408 0.99098 1.18424 0.95696 0.94037 0.91431 1.41775 1.08242 1.38758 1.30953 0.74781 1.21822 0.82434 1.02238 1.01853 1.21780 0.99095 1.01768 0.99012 1.19162 0.92478 1.01556 0.99572 1.20706 0.99262 0.90990 0.91227 1.22779 0.95977 0.83109 0.96260 0.92642 1.86496 1.50494 1.30242 1.70226 1.21522 0.98769 0.87409 0.92952 0.93377 0.88887 0.95813 0.91798 0.92395 0.77128 0.85326 0.85818 0.81160 0.83289 0.84428 0.78075 0.95294 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.01 11.19 55.49 0.62 -25.39 16 2 C 0.01 0.14 4.91 -17.43 -0.09 0.06 16 3 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.26 -6.98 9.58 -15.06 -0.14 -7.12 16 8 H 0.07 1.71 7.89 -52.49 -0.41 1.29 16 9 N -0.59 -14.53 3.00 -172.58 -0.52 -15.05 16 10 C 0.17 4.15 5.28 -3.94 -0.02 4.12 16 11 C -0.15 -2.96 5.63 -26.83 -0.15 -3.11 16 12 C 0.16 3.04 2.12 -67.88 -0.14 2.90 16 13 H 0.09 1.90 7.58 -51.93 -0.39 1.50 16 14 N -0.71 -11.29 4.87 -54.76 -0.27 -11.56 16 15 C 0.56 9.53 7.73 -12.42 -0.10 9.43 16 16 O -0.54 -11.26 15.99 5.29 0.08 -11.18 16 17 C -0.16 -2.20 5.87 -104.97 -0.62 -2.82 16 18 C -0.06 -0.71 9.46 -39.53 -0.37 -1.08 16 19 C -0.14 -1.32 10.00 -39.85 -0.40 -1.72 16 20 C 0.11 1.14 7.27 -83.95 -0.61 0.53 16 21 N -0.59 -4.16 6.05 -10.61 -0.06 -4.22 16 22 H 0.42 1.55 8.96 -40.82 -0.37 1.19 16 23 C 0.04 0.28 11.81 -16.73 -0.20 0.08 16 24 C -0.19 -1.74 11.09 -37.65 -0.42 -2.16 16 25 C -0.12 -1.44 6.36 -105.16 -0.67 -2.11 16 26 C 0.00 -0.03 9.64 -38.86 -0.37 -0.41 16 27 C 0.08 1.38 3.14 -26.61 -0.08 1.29 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 O -0.57 -8.66 13.16 -35.23 -0.46 -9.13 16 30 C 0.12 2.49 6.14 -3.71 -0.02 2.46 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.09 2.50 6.04 -51.93 -0.31 2.18 16 33 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.39 5.14 6.60 -40.82 -0.27 4.87 16 37 H 0.13 1.16 6.36 -52.49 -0.33 0.82 16 38 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 39 H 0.17 0.49 8.06 -52.48 -0.42 0.07 16 40 H 0.15 1.09 8.06 -52.48 -0.42 0.67 16 41 H 0.14 1.89 7.64 -52.49 -0.40 1.49 16 42 H 0.37 4.04 9.08 45.56 0.41 4.45 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 LS Contribution 362.51 15.07 5.46 5.46 Total: -1.00 -34.64 362.51 -9.59 -44.22 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -5.01 Total: 10.13 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -4.41 Total: 0.35 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.23 Total: -56.22 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.38 Total: -20.30 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.64 -9.59 -44.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090536077.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.469 kcal (2) G-P(sol) polarization free energy of solvation -34.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds