Wall clock time and date at job start Tue Mar 31 2020 06:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86792 * 120.00157 * 2 1 4 4 H 1.48504 * 109.47290 * 270.00063 * 3 2 1 5 5 H 1.48504 * 109.47062 * 29.99850 * 3 2 1 6 6 H 1.48494 * 109.47384 * 149.99747 * 3 2 1 7 7 C 1.38813 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00053 * 163.07572 * 7 2 1 9 9 N 1.36940 * 120.00059 * 343.08402 * 7 2 1 10 10 C 1.46924 * 120.62940 * 151.80721 * 9 7 2 11 11 C 1.53198 * 108.77586 * 126.41117 * 10 9 7 12 12 C 1.53044 * 109.30885 * 54.63429 * 11 10 9 13 13 H 1.09002 * 109.46283 * 58.65519 * 12 11 10 14 14 N 1.46507 * 109.45883 * 178.61557 * 12 11 10 15 15 C 1.34770 * 119.99793 * 275.06900 * 14 12 11 16 16 O 1.21582 * 120.00077 * 359.97438 * 15 14 12 17 17 C 1.47654 * 119.99937 * 180.02562 * 15 14 12 18 18 C 1.40205 * 119.97413 * 359.72308 * 17 15 14 19 19 C 1.36321 * 120.67235 * 179.71186 * 18 17 15 20 20 C 1.39367 * 120.23055 * 0.56699 * 19 18 17 21 21 N 1.37401 * 133.24313 * 179.71694 * 20 19 18 22 22 H 0.97000 * 125.01037 * 359.97438 * 21 20 19 23 23 C 1.36860 * 109.97863 * 179.97438 * 21 20 19 24 24 C 1.34191 * 109.96064 * 0.02562 * 23 21 20 25 25 C 1.40876 * 119.64400 * 359.71383 * 20 19 18 26 26 C 1.39148 * 119.97678 * 180.02562 * 17 15 14 27 27 C 1.53038 * 109.53962 * 298.63605 * 12 11 10 28 28 H 1.09010 * 109.52255 * 301.40008 * 27 12 11 29 29 O 1.42903 * 109.50010 * 181.32035 * 27 12 11 30 30 C 1.46928 * 120.63121 * 331.82945 * 9 7 2 31 31 H 0.96996 * 120.00033 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.59011 * 246.19809 * 10 9 7 33 33 H 1.08999 * 109.58875 * 6.48113 * 10 9 7 34 34 H 1.08999 * 109.50030 * 174.58276 * 11 10 9 35 35 H 1.08998 * 109.49625 * 294.65129 * 11 10 9 36 36 H 0.97000 * 119.99772 * 95.06586 * 14 12 11 37 37 H 1.08006 * 119.66049 * 359.97438 * 18 17 15 38 38 H 1.07993 * 119.88185 * 180.26055 * 19 18 17 39 39 H 1.08005 * 125.02075 * 180.02562 * 23 21 20 40 40 H 1.08005 * 126.54240 * 180.02562 * 24 23 21 41 41 H 1.08002 * 120.30042 * 0.02562 * 26 17 15 42 42 H 0.96702 * 113.99909 * 180.15919 * 29 27 12 43 43 H 1.08994 * 109.58942 * 113.79825 * 30 9 7 44 44 H 1.09002 * 109.58161 * 353.37124 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2226 -0.2717 9 7 1.3700 -2.3623 0.3461 10 6 1.8136 -3.6529 -0.1982 11 6 2.0673 -4.6175 0.9646 12 6 0.8119 -4.7009 1.8360 13 1 -0.0284 -5.0409 1.2307 14 7 1.0395 -5.6479 2.9304 15 6 0.8360 -6.9656 2.7346 16 8 0.4631 -7.3685 1.6497 17 6 1.0649 -7.9200 3.8378 18 6 1.4995 -7.4553 5.0871 19 6 1.7096 -8.3231 6.1172 20 6 1.5052 -9.6898 5.9361 21 7 1.6360 -10.7789 6.7635 22 1 1.9203 -10.7428 7.6902 23 6 1.3059 -11.9221 6.0874 24 6 0.9576 -11.6241 4.8262 25 6 1.0742 -10.1699 4.6838 26 6 0.8551 -9.2805 3.6348 27 6 0.4975 -3.3193 2.4142 28 1 1.3471 -2.9676 2.9998 29 8 -0.6569 -3.4044 3.2523 30 6 0.2261 -2.3400 1.2679 31 1 -0.4850 0.8400 -0.0004 32 1 1.0399 -4.0604 -0.8489 33 1 2.7329 -3.5130 -0.7669 34 1 2.3039 -5.6064 0.5720 35 1 2.9027 -4.2541 1.5630 36 1 1.3368 -5.3263 3.7960 37 1 1.6654 -6.3985 5.2361 38 1 2.0403 -7.9508 7.0755 39 1 1.3231 -12.9172 6.5069 40 1 0.6494 -12.3223 4.0620 41 1 0.5255 -9.6435 2.6725 42 1 -0.9158 -2.5626 3.6517 43 1 -0.6771 -2.6404 0.7369 44 1 0.0995 -1.3343 1.6688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090536078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:52 Heat of formation + Delta-G solvation = -1.739600 kcal Electronic energy + Delta-G solvation = -27519.789253 eV Core-core repulsion = 23631.027615 eV Total energy + Delta-G solvation = -3888.761639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.51064 -39.73789 -37.97371 -36.56571 -35.23214 -34.30644 -32.29610 -32.11440 -30.24651 -29.22990 -28.97265 -28.63242 -25.30473 -23.67164 -22.55977 -22.27147 -21.66368 -21.07032 -20.03466 -19.40894 -18.37825 -17.47817 -16.73065 -16.59997 -16.31353 -15.76058 -14.95598 -14.89974 -14.52861 -14.35014 -14.24379 -13.97438 -13.76799 -13.55920 -13.35139 -13.27252 -12.91419 -12.75497 -12.48456 -12.16750 -11.99692 -11.64938 -11.61536 -11.18842 -11.10052 -10.81513 -10.74690 -10.36624 -10.19910 -10.05265 -9.99366 -9.82227 -9.49026 -9.30644 -8.72196 -8.53421 -8.41754 -8.01740 -6.75090 -5.85381 -3.28970 0.85205 1.06098 2.43344 2.79291 3.05639 3.33440 3.41028 3.42875 3.45209 3.93400 4.42012 4.43365 4.53848 4.62918 4.79308 4.90273 5.03947 5.20293 5.30267 5.32871 5.40514 5.46871 5.53876 5.65289 5.68195 5.84426 5.95494 6.05550 6.11552 6.13981 6.25967 6.29354 6.38537 6.45197 6.50528 6.54529 6.74729 6.82739 6.92662 6.95866 7.15010 7.16777 7.48244 7.73669 7.84426 8.13207 8.38329 8.53416 9.13247 9.76125 10.32806 11.23107 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.031163 B = 0.002361 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.290256 B =11858.356959 C =12093.266456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.255 4.255 8 H 0.068 0.932 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.139 4.139 12 C 0.163 3.837 13 H 0.089 0.911 14 N -0.711 5.711 15 C 0.560 3.440 16 O -0.545 6.545 17 C -0.158 4.158 18 C -0.064 4.064 19 C -0.138 4.138 20 C 0.113 3.887 21 N -0.594 5.594 22 H 0.416 0.584 23 C 0.042 3.958 24 C -0.192 4.192 25 C -0.123 4.123 26 C -0.003 4.003 27 C 0.072 3.928 28 H 0.051 0.949 29 O -0.572 6.572 30 C 0.149 3.851 31 H 0.255 0.745 32 H 0.024 0.976 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.395 0.605 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.171 0.829 40 H 0.149 0.851 41 H 0.138 0.862 42 H 0.375 0.625 43 H 0.030 0.970 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.409 -19.697 16.336 25.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.384 4.384 8 H 0.086 0.914 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.179 4.179 12 C 0.059 3.941 13 H 0.107 0.893 14 N -0.361 5.361 15 C 0.347 3.653 16 O -0.424 6.424 17 C -0.163 4.163 18 C -0.084 4.084 19 C -0.158 4.158 20 C 0.004 3.996 21 N -0.197 5.197 22 H 0.252 0.748 23 C -0.083 4.083 24 C -0.217 4.217 25 C -0.128 4.128 26 C -0.022 4.022 27 C 0.011 3.989 28 H 0.069 0.931 29 O -0.377 6.377 30 C 0.022 3.978 31 H 0.065 0.935 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.230 0.770 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.188 0.812 40 H 0.167 0.833 41 H 0.155 0.845 42 H 0.222 0.778 43 H 0.048 0.952 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.090 -20.479 15.479 25.856 hybrid contribution 0.656 1.644 1.110 2.089 sum 3.746 -18.835 16.589 25.377 Atomic orbital electron populations 1.70029 1.05259 1.25664 1.53665 1.25091 0.95321 0.98546 1.00724 0.86288 0.79117 0.83478 0.77838 1.21285 1.21543 1.20456 1.19189 0.92663 0.84591 1.41956 0.91419 1.44011 1.35695 1.01945 1.49683 1.20946 0.98257 0.86288 0.92719 1.22415 0.96661 1.00254 0.98615 1.20991 0.98695 0.86818 0.87607 0.89342 1.46001 1.68338 1.06169 1.15546 1.18121 0.77329 0.82363 0.87476 1.90760 1.47046 1.78475 1.26109 1.19725 1.08060 0.93891 0.94591 1.20675 0.96778 0.99370 0.91568 1.19635 1.06845 0.89231 1.00128 1.18428 1.01357 0.89003 0.90784 1.41778 1.59732 1.05013 1.13199 0.74768 1.21822 1.02832 0.90601 0.93066 1.21777 1.09745 0.93214 0.96954 1.19162 1.06455 0.93836 0.93334 1.20695 0.92966 0.90671 0.97874 1.22982 0.87034 0.95539 0.93349 0.93088 1.86429 1.48359 1.36679 1.66214 1.21411 0.89854 0.98056 0.88523 0.93501 0.95814 0.92117 0.91722 0.92042 0.77028 0.85289 0.85794 0.81159 0.83299 0.84459 0.77819 0.95206 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.60 11.20 55.49 0.62 -24.98 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.14 29.59 -169.99 -5.03 16.11 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.25 -6.82 9.58 -15.06 -0.14 -6.96 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 9 N -0.59 -14.53 2.99 -172.32 -0.52 -15.04 16 10 C 0.14 3.10 6.52 -3.71 -0.02 3.07 16 11 C -0.14 -2.58 5.65 -26.61 -0.15 -2.73 16 12 C 0.16 3.03 2.12 -67.88 -0.14 2.88 16 13 H 0.09 1.90 7.58 -51.93 -0.39 1.50 16 14 N -0.71 -11.27 4.87 -54.76 -0.27 -11.53 16 15 C 0.56 9.39 7.73 -12.42 -0.10 9.29 16 16 O -0.55 -11.04 15.99 5.29 0.08 -10.95 16 17 C -0.16 -2.18 5.87 -104.98 -0.62 -2.80 16 18 C -0.06 -0.70 9.46 -39.53 -0.37 -1.08 16 19 C -0.14 -1.32 10.00 -39.85 -0.40 -1.71 16 20 C 0.11 1.14 7.27 -83.95 -0.61 0.53 16 21 N -0.59 -4.11 6.05 -10.61 -0.06 -4.18 16 22 H 0.42 1.53 8.96 -40.82 -0.37 1.17 16 23 C 0.04 0.28 11.81 -16.73 -0.20 0.08 16 24 C -0.19 -1.72 11.09 -37.65 -0.42 -2.13 16 25 C -0.12 -1.43 6.36 -105.16 -0.67 -2.10 16 26 C 0.00 -0.03 9.64 -38.86 -0.37 -0.41 16 27 C 0.07 1.35 3.14 -26.61 -0.08 1.27 16 28 H 0.05 0.94 8.14 -51.92 -0.42 0.51 16 29 O -0.57 -9.89 13.16 -35.23 -0.46 -10.36 16 30 C 0.15 3.46 4.93 -3.71 -0.02 3.44 16 31 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.40 5.24 6.60 -40.82 -0.27 4.97 16 37 H 0.13 1.18 6.36 -52.48 -0.33 0.84 16 38 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.17 0.47 8.06 -52.48 -0.42 0.05 16 40 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 41 H 0.14 1.85 7.64 -52.49 -0.40 1.44 16 42 H 0.38 5.17 9.08 45.56 0.41 5.58 16 43 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.09 2.35 6.06 -51.93 -0.31 2.03 16 LS Contribution 362.56 15.07 5.46 5.46 Total: -1.00 -34.10 362.56 -9.58 -43.68 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -5.01 Total: 11.17 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -4.40 Total: 0.61 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.23 Total: -55.73 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.38 Total: -21.31 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.10 -9.58 -43.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090536078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.945 kcal (2) G-P(sol) polarization free energy of solvation -34.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds