Wall clock time and date at job start Tue Mar 31 2020 06:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 119.99979 * 2 1 4 4 H 1.48499 * 109.47195 * 272.90161 * 3 2 1 5 5 H 1.48502 * 109.47245 * 32.89897 * 3 2 1 6 6 H 1.48503 * 109.47373 * 152.90154 * 3 2 1 7 7 C 1.38805 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99993 * 339.35646 * 7 2 1 9 9 N 1.36939 * 120.00149 * 159.36413 * 7 2 1 10 10 C 1.46925 * 120.62754 * 332.60043 * 9 7 2 11 11 C 1.53197 * 108.76785 * 233.64110 * 10 9 7 12 12 C 1.53040 * 109.30781 * 305.34431 * 11 10 9 13 13 H 1.08996 * 109.46281 * 301.36863 * 12 11 10 14 14 N 1.46507 * 109.45808 * 181.39823 * 12 11 10 15 15 C 1.34770 * 120.00012 * 84.96810 * 14 12 11 16 16 O 1.21582 * 119.99808 * 0.02562 * 15 14 12 17 17 C 1.47655 * 120.00092 * 179.72089 * 15 14 12 18 18 C 1.40212 * 119.96932 * 359.73422 * 17 15 14 19 19 C 1.36319 * 120.66311 * 179.77002 * 18 17 15 20 20 C 1.39373 * 120.23900 * 0.47834 * 19 18 17 21 21 N 1.37394 * 133.24815 * 179.77478 * 20 19 18 22 22 H 0.96999 * 125.00789 * 359.97438 * 21 20 19 23 23 C 1.36858 * 109.98085 * 180.02562 * 21 20 19 24 24 C 1.34188 * 109.96231 * 359.97438 * 23 21 20 25 25 C 1.40868 * 119.63774 * 359.78363 * 20 19 18 26 26 C 1.39152 * 119.97271 * 180.02562 * 17 15 14 27 27 C 1.53041 * 109.52671 * 61.38784 * 12 11 10 28 28 H 1.08997 * 109.49446 * 178.67737 * 27 12 11 29 29 O 1.42900 * 109.50110 * 58.57521 * 27 12 11 30 30 C 1.46924 * 120.63531 * 152.62557 * 9 7 2 31 31 H 0.97002 * 120.00277 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.58659 * 353.41966 * 10 9 7 33 33 H 1.09004 * 109.58825 * 113.69926 * 10 9 7 34 34 H 1.09002 * 109.48420 * 185.40061 * 11 10 9 35 35 H 1.09000 * 109.50930 * 65.30314 * 11 10 9 36 36 H 0.96998 * 119.99319 * 264.97486 * 14 12 11 37 37 H 1.07994 * 119.66839 * 359.97438 * 18 17 15 38 38 H 1.08000 * 119.88088 * 180.26186 * 19 18 17 39 39 H 1.08003 * 125.01788 * 179.97438 * 23 21 20 40 40 H 1.07999 * 126.54385 * 180.02562 * 24 23 21 41 41 H 1.08001 * 120.30504 * 0.02562 * 26 17 15 42 42 H 0.96701 * 113.99859 * 179.97438 * 29 27 12 43 43 H 1.08996 * 109.58705 * 6.58197 * 30 9 7 44 44 H 1.09001 * 109.70473 * 246.22474 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4363 2.0818 -1.3983 5 1 1.4796 2.6342 0.7605 6 1 3.5771 1.4233 0.6378 7 6 2.0101 -1.2021 0.0005 8 1 1.5221 -2.1073 0.3307 9 7 3.3136 -1.2404 -0.4174 10 6 3.8174 -0.2597 -1.3886 11 6 4.4615 -1.0106 -2.5583 12 6 5.5283 -1.9668 -2.0199 13 1 6.2776 -1.4006 -1.4669 14 7 6.1696 -2.6623 -3.1386 15 6 7.1989 -2.0854 -3.7897 16 8 7.5955 -0.9879 -3.4485 17 6 7.8492 -2.7890 -4.9132 18 6 7.3990 -4.0598 -5.2984 19 6 7.9861 -4.7201 -6.3366 20 6 9.0517 -4.1415 -7.0237 21 7 9.8267 -4.5556 -8.0799 22 1 9.7285 -5.4016 -8.5441 23 6 10.7585 -3.5991 -8.3796 24 6 10.6252 -2.5535 -7.5490 25 6 9.5167 -2.8675 -6.6427 26 6 8.9123 -2.1930 -5.5848 27 6 4.8744 -2.9914 -1.0900 28 1 5.6307 -3.6864 -0.7254 29 8 3.8690 -3.7118 -1.8057 30 6 4.2348 -2.2632 0.0964 31 1 -0.4851 0.8400 -0.0004 32 1 2.9909 0.3487 -1.7557 33 1 4.5584 0.3809 -0.9102 34 1 4.9238 -0.2956 -3.2389 35 1 3.6986 -1.5790 -3.0903 36 1 5.8532 -3.5380 -3.4105 37 1 6.5768 -4.5186 -4.7696 38 1 7.6264 -5.6966 -6.6254 39 1 11.4927 -3.6745 -9.1681 40 1 11.2208 -1.6527 -7.5485 41 1 9.2656 -1.2165 -5.2880 42 1 3.4123 -4.3801 -1.2766 43 1 3.6838 -2.9767 0.7090 44 1 5.0119 -1.7898 0.6965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090536079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:56 Heat of formation + Delta-G solvation = 7.409242 kcal Electronic energy + Delta-G solvation = -27717.430725 eV Core-core repulsion = 23829.065810 eV Total energy + Delta-G solvation = -3888.364915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.56484 -39.89256 -38.27253 -36.65911 -35.12025 -34.38643 -32.29634 -31.97888 -30.61775 -29.71551 -29.23793 -28.86376 -25.30332 -23.58662 -22.75793 -22.56990 -21.80567 -21.12931 -20.09966 -19.68190 -18.43219 -17.48685 -16.99257 -16.58939 -16.08428 -15.84118 -15.18372 -14.95804 -14.52804 -14.38597 -14.31453 -14.26578 -14.11787 -13.88037 -13.44762 -13.33644 -13.03466 -12.82748 -12.67980 -12.29708 -11.97964 -11.92238 -11.72148 -11.41907 -11.15305 -11.05105 -10.80798 -10.20674 -10.12030 -10.10579 -10.01338 -9.70429 -9.55775 -9.44616 -8.77807 -8.55970 -8.47739 -8.07211 -6.93836 -5.91686 -3.27130 0.78877 1.00040 2.38708 2.74811 2.95814 3.32083 3.39028 3.53527 3.56965 3.85000 4.37400 4.49206 4.57132 4.59761 4.74141 4.80049 4.97665 4.99356 5.13466 5.18363 5.26191 5.30823 5.41734 5.44940 5.61844 5.63219 5.78858 5.79661 6.00611 6.07239 6.16176 6.21681 6.30788 6.33003 6.33854 6.40569 6.44610 6.54219 6.71106 6.76773 6.81662 7.03404 7.12180 7.73692 7.94366 8.07890 8.34310 8.41333 8.95010 9.74629 10.11244 11.24112 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.026270 B = 0.002603 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.600662 B =10752.515403 C =11279.427198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.882 3.118 4 H -0.288 1.288 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.256 4.256 8 H 0.084 0.916 9 N -0.596 5.596 10 C 0.128 3.872 11 C -0.137 4.137 12 C 0.162 3.838 13 H 0.093 0.907 14 N -0.715 5.715 15 C 0.558 3.442 16 O -0.544 6.544 17 C -0.161 4.161 18 C -0.064 4.064 19 C -0.137 4.137 20 C 0.114 3.886 21 N -0.594 5.594 22 H 0.416 0.584 23 C 0.043 3.957 24 C -0.192 4.192 25 C -0.124 4.124 26 C -0.002 4.002 27 C 0.081 3.919 28 H 0.050 0.950 29 O -0.554 6.554 30 C 0.121 3.879 31 H 0.262 0.738 32 H 0.075 0.925 33 H 0.027 0.973 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.401 0.599 37 H 0.131 0.869 38 H 0.125 0.875 39 H 0.172 0.828 40 H 0.149 0.851 41 H 0.138 0.862 42 H 0.375 0.625 43 H 0.070 0.930 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.001 -12.940 -15.297 29.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.384 4.384 8 H 0.102 0.898 9 N -0.320 5.320 10 C 0.002 3.998 11 C -0.178 4.178 12 C 0.058 3.942 13 H 0.111 0.889 14 N -0.365 5.365 15 C 0.346 3.654 16 O -0.423 6.423 17 C -0.165 4.165 18 C -0.084 4.084 19 C -0.158 4.158 20 C 0.005 3.995 21 N -0.197 5.197 22 H 0.253 0.747 23 C -0.082 4.082 24 C -0.217 4.217 25 C -0.128 4.128 26 C -0.021 4.021 27 C 0.020 3.980 28 H 0.068 0.932 29 O -0.359 6.359 30 C -0.006 4.006 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.237 0.763 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.189 0.811 40 H 0.167 0.833 41 H 0.155 0.845 42 H 0.222 0.778 43 H 0.089 0.911 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 21.315 -11.764 -15.572 28.900 hybrid contribution 0.028 -0.226 -0.003 0.228 sum 21.343 -11.990 -15.575 29.015 Atomic orbital electron populations 1.69836 1.05714 1.26531 1.53054 1.25249 0.95218 0.97606 0.99503 0.86971 0.80013 0.84673 0.77135 1.21552 1.23206 1.19511 1.18842 0.84867 0.94620 1.40048 0.89826 1.44198 1.08476 1.32973 1.46314 1.21346 0.97302 0.91941 0.89178 1.22313 0.97798 0.98217 0.99433 1.20979 0.94055 0.92743 0.86431 0.88950 1.46044 1.33673 1.22395 1.34422 1.18181 0.79739 0.85358 0.82126 1.90769 1.64495 1.20260 1.66791 1.19690 1.00410 0.96356 1.00048 1.20687 0.98561 0.93476 0.95702 1.19649 0.96866 1.01085 0.98179 1.18433 0.94977 0.95109 0.90962 1.41786 1.29453 1.18999 1.29437 0.74721 1.21831 0.95265 0.89541 1.01611 1.21782 1.00898 1.00500 0.98512 1.19165 0.99548 0.94852 0.99263 1.20697 0.91740 0.98754 0.90915 1.22585 0.89437 0.92670 0.93314 0.93181 1.86447 1.53880 1.54626 1.40914 1.21567 0.93440 0.92577 0.93015 0.92806 0.90665 0.95550 0.92470 0.90545 0.76323 0.85171 0.85726 0.81121 0.83282 0.84461 0.77779 0.91108 0.95005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.06 13.97 55.49 0.78 -27.29 16 2 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 3 Si 0.88 22.95 24.34 -169.99 -4.14 18.82 16 4 H -0.29 -7.35 6.62 56.52 0.37 -6.97 16 5 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 6 H -0.27 -6.91 6.64 56.52 0.38 -6.53 16 7 C -0.26 -7.09 10.03 -15.06 -0.15 -7.24 16 8 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 9 N -0.60 -14.08 2.71 -172.32 -0.47 -14.55 16 10 C 0.13 2.95 4.21 -3.71 -0.02 2.93 16 11 C -0.14 -2.73 5.51 -26.61 -0.15 -2.88 16 12 C 0.16 2.76 2.20 -67.88 -0.15 2.61 16 13 H 0.09 1.67 7.57 -51.93 -0.39 1.28 16 14 N -0.71 -10.46 5.00 -54.77 -0.27 -10.73 16 15 C 0.56 8.77 7.73 -12.42 -0.10 8.67 16 16 O -0.54 -10.43 15.99 5.29 0.08 -10.35 16 17 C -0.16 -2.09 5.87 -104.97 -0.62 -2.71 16 18 C -0.06 -0.67 9.46 -39.53 -0.37 -1.04 16 19 C -0.14 -1.24 10.00 -39.85 -0.40 -1.64 16 20 C 0.11 1.09 7.27 -83.96 -0.61 0.48 16 21 N -0.59 -3.89 6.05 -10.61 -0.06 -3.95 16 22 H 0.42 1.39 8.96 -40.82 -0.37 1.03 16 23 C 0.04 0.27 11.81 -16.74 -0.20 0.07 16 24 C -0.19 -1.64 11.09 -37.65 -0.42 -2.06 16 25 C -0.12 -1.37 6.36 -105.15 -0.67 -2.04 16 26 C 0.00 -0.02 9.64 -38.86 -0.37 -0.39 16 27 C 0.08 1.27 3.38 -26.61 -0.09 1.18 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 O -0.55 -8.64 12.08 -35.23 -0.43 -9.07 16 30 C 0.12 2.27 6.16 -3.71 -0.02 2.25 16 31 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 32 H 0.08 1.90 4.50 -51.93 -0.23 1.67 16 33 H 0.03 0.61 7.07 -51.93 -0.37 0.24 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.08 1.61 7.61 -51.93 -0.40 1.21 16 36 H 0.40 4.98 6.26 -40.82 -0.26 4.73 16 37 H 0.13 1.11 6.36 -52.49 -0.33 0.77 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.17 0.42 8.06 -52.48 -0.42 0.00 16 40 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.14 1.76 7.64 -52.49 -0.40 1.36 16 42 H 0.38 4.65 9.08 45.56 0.41 5.07 16 43 H 0.07 1.26 7.93 -51.93 -0.41 0.84 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -35.98 354.43 -8.48 -44.46 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -4.89 Total: 8.54 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -4.42 Total: -1.22 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.03 Total: -56.52 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.34 Total: -19.42 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.14 Total: 18.82 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.98 -8.48 -44.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090536079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.873 kcal (2) G-P(sol) polarization free energy of solvation -35.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds