Wall clock time and date at job start Tue Mar 31 2020 06:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00289 * 2 1 4 4 H 1.48500 * 109.47349 * 270.00480 * 3 2 1 5 5 H 1.48508 * 109.47009 * 30.00172 * 3 2 1 6 6 H 1.48502 * 109.47158 * 150.00250 * 3 2 1 7 7 C 1.38816 * 119.99516 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99458 * 163.08026 * 7 2 1 9 9 N 1.36933 * 120.00203 * 343.08552 * 7 2 1 10 10 C 1.46932 * 120.62900 * 331.80364 * 9 7 2 11 11 C 1.53185 * 108.76598 * 233.64180 * 10 9 7 12 12 C 1.53040 * 109.31332 * 305.34652 * 11 10 9 13 13 H 1.09005 * 109.46029 * 301.37053 * 12 11 10 14 14 N 1.46507 * 109.45965 * 181.39737 * 12 11 10 15 15 C 1.34780 * 119.99374 * 84.97624 * 14 12 11 16 16 O 1.21588 * 120.00563 * 359.97438 * 15 14 12 17 17 C 1.47506 * 119.99335 * 179.97438 * 15 14 12 18 18 C 1.39346 * 120.21290 * 0.02562 * 17 15 14 19 19 C 1.38319 * 120.49462 * 179.74614 * 18 17 15 20 20 C 1.37906 * 120.59847 * 0.27255 * 19 18 17 21 21 C 1.39542 * 119.98755 * 359.97438 * 20 19 18 22 22 C 1.46569 * 133.95814 * 180.02562 * 21 20 19 23 23 C 1.34213 * 106.89195 * 180.02562 * 22 21 20 24 24 N 1.36902 * 109.88511 * 359.97438 * 23 22 21 25 25 H 0.96999 * 125.01823 * 180.02562 * 24 23 22 26 26 C 1.37130 * 109.96593 * 0.02562 * 24 23 22 27 27 C 1.53041 * 109.52945 * 61.38774 * 12 11 10 28 28 H 1.09007 * 109.49510 * 58.60800 * 27 12 11 29 29 O 1.42890 * 109.50129 * 178.67576 * 27 12 11 30 30 C 1.46927 * 120.63091 * 151.83418 * 9 7 2 31 31 H 0.97008 * 120.00068 * 359.97438 * 1 2 3 32 32 H 1.08994 * 109.58753 * 353.42625 * 10 9 7 33 33 H 1.09001 * 109.57916 * 113.84723 * 10 9 7 34 34 H 1.09003 * 109.48531 * 185.40027 * 11 10 9 35 35 H 1.09006 * 109.51129 * 65.30360 * 11 10 9 36 36 H 0.96998 * 120.00276 * 264.97354 * 14 12 11 37 37 H 1.07996 * 119.74908 * 0.02562 * 18 17 15 38 38 H 1.08007 * 119.69910 * 180.24739 * 19 18 17 39 39 H 1.07994 * 120.00856 * 179.97438 * 20 19 18 40 40 H 1.08001 * 126.55509 * 359.97270 * 22 21 20 41 41 H 1.08002 * 125.05653 * 179.97438 * 23 22 21 42 42 H 0.96699 * 114.00464 * 179.97438 * 29 27 12 43 43 H 1.09002 * 109.58604 * 6.57583 * 30 9 7 44 44 H 1.08998 * 109.70028 * 246.21703 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2728 9 7 1.3699 -2.3626 0.3440 10 6 0.2263 -2.3411 1.2662 11 6 0.4987 -3.3207 2.4120 12 6 0.8130 -4.7020 1.8329 13 1 -0.0274 -5.0419 1.2277 14 7 1.0414 -5.6494 2.9269 15 6 -0.0031 -6.2725 3.5077 16 8 -1.1349 -6.0480 3.1241 17 6 0.2268 -7.2268 4.6087 18 6 1.5220 -7.4869 5.0521 19 6 1.7439 -8.3767 6.0876 20 6 0.6888 -9.0250 6.6944 21 6 -0.6171 -8.7852 6.2649 22 6 -1.9315 -9.2873 6.6754 23 6 -2.8401 -8.6906 5.8883 24 7 -2.2136 -7.8483 5.0095 25 1 -2.6623 -7.3068 4.3414 26 6 -0.8579 -7.8833 5.2131 27 6 2.0681 -4.6178 0.9612 28 1 2.9033 -4.2547 1.5601 29 8 2.3787 -5.9138 0.4458 30 6 1.8138 -3.6528 -0.2011 31 1 -0.4851 0.8401 0.0004 32 1 0.0993 -1.3357 1.6675 33 1 -0.6770 -2.6416 0.7352 34 1 -0.3815 -3.3860 3.0516 35 1 1.3488 -2.9695 2.9969 36 1 1.9442 -5.8283 3.2331 37 1 2.3583 -6.9866 4.5868 38 1 2.7528 -8.5657 6.4237 39 1 0.8730 -9.7181 7.5018 40 1 -2.1307 -10.0017 7.4605 41 1 -3.9069 -8.8509 5.9404 42 1 3.1645 -5.9353 -0.1174 43 1 2.7342 -3.5127 -0.7679 44 1 1.0417 -4.0614 -0.8530 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090584849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:01 Heat of formation + Delta-G solvation = -3.851855 kcal Electronic energy + Delta-G solvation = -27925.959152 eV Core-core repulsion = 24037.105919 eV Total energy + Delta-G solvation = -3888.853233 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.47072 -39.63580 -37.94176 -36.86243 -35.42713 -34.34085 -32.39588 -31.74109 -30.13808 -29.55533 -28.96204 -28.35088 -25.34795 -23.88492 -22.41405 -22.05047 -21.81912 -21.01636 -20.20075 -19.55031 -18.13049 -17.28344 -16.91648 -16.54463 -16.25488 -15.85130 -15.10384 -14.98836 -14.81696 -14.25521 -14.12847 -14.03485 -13.92316 -13.65376 -13.31073 -13.18012 -12.79459 -12.73597 -12.30661 -12.11558 -11.96723 -11.73462 -11.63699 -11.50374 -11.13420 -10.88718 -10.69532 -10.35024 -10.30764 -9.97949 -9.89341 -9.86181 -9.73679 -9.45704 -8.79862 -8.48745 -8.40042 -7.89099 -6.79157 -5.87285 -3.31770 0.59862 1.48232 2.41316 3.09633 3.11137 3.31504 3.35347 3.40021 3.41756 3.88011 4.34644 4.48756 4.52373 4.68637 4.78933 4.90632 5.09068 5.22475 5.27403 5.30999 5.37556 5.45707 5.52989 5.63260 5.72710 5.73774 5.76937 5.94811 6.08858 6.13169 6.28234 6.33891 6.45786 6.47949 6.51736 6.57463 6.64498 6.74670 6.83371 6.97368 7.26135 7.45178 7.57601 7.70626 7.71926 7.90142 8.35379 8.38815 9.10737 9.73132 10.29179 11.21361 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.021224 B = 0.002744 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.968467 B =10202.071738 C =10646.214163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.146 4.146 12 C 0.163 3.837 13 H 0.088 0.912 14 N -0.708 5.708 15 C 0.561 3.439 16 O -0.555 6.555 17 C -0.144 4.144 18 C -0.060 4.060 19 C -0.159 4.159 20 C -0.046 4.046 21 C -0.123 4.123 22 C -0.208 4.208 23 C 0.050 3.950 24 N -0.578 5.578 25 H 0.428 0.572 26 C 0.150 3.850 27 C 0.080 3.920 28 H 0.057 0.943 29 O -0.571 6.571 30 C 0.121 3.879 31 H 0.256 0.744 32 H 0.093 0.907 33 H 0.024 0.976 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.396 0.604 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.148 0.852 41 H 0.172 0.828 42 H 0.374 0.626 43 H 0.060 0.940 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.458 -18.161 12.708 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.389 4.389 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.046 3.954 11 C -0.187 4.187 12 C 0.059 3.941 13 H 0.106 0.894 14 N -0.357 5.357 15 C 0.349 3.651 16 O -0.436 6.436 17 C -0.150 4.150 18 C -0.080 4.080 19 C -0.178 4.178 20 C -0.065 4.065 21 C -0.128 4.128 22 C -0.233 4.233 23 C -0.076 4.076 24 N -0.181 5.181 25 H 0.268 0.732 26 C 0.038 3.962 27 C 0.019 3.981 28 H 0.074 0.926 29 O -0.375 6.375 30 C -0.007 4.007 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.231 0.769 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.165 0.835 41 H 0.189 0.811 42 H 0.220 0.780 43 H 0.079 0.921 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.100 -17.916 12.643 21.928 hybrid contribution 1.127 1.206 -0.507 1.727 sum 1.027 -16.710 12.136 20.677 Atomic orbital electron populations 1.70034 1.05320 1.25768 1.53131 1.25086 0.95304 0.98561 1.00444 0.86282 0.79142 0.83452 0.77770 1.21295 1.21461 1.20415 1.19141 0.92534 0.84569 1.42697 0.91561 1.44038 1.35932 1.01192 1.50021 1.20822 0.88709 0.98239 0.87649 1.22609 1.01049 0.94285 1.00729 1.21032 0.97630 0.89068 0.86329 0.89390 1.45981 1.09083 1.44058 1.36545 1.18126 0.85048 0.80084 0.81880 1.90679 1.22620 1.65489 1.64763 1.19032 0.92248 1.02812 1.00874 1.21056 0.94541 0.96604 0.95798 1.20783 0.99034 0.99617 0.98384 1.20674 0.90339 0.97456 0.98001 1.19226 0.94074 1.00816 0.98673 1.21664 0.90105 1.06703 1.04783 1.21958 0.98576 0.94407 0.92689 1.42036 1.04880 1.38699 1.32482 0.73170 1.17972 0.83900 0.97657 0.96641 1.22781 0.95970 0.83238 0.96153 0.92555 1.86486 1.50734 1.30449 1.69848 1.21522 0.98829 0.87401 0.92902 0.93426 0.88883 0.95835 0.91972 0.92289 0.76911 0.85356 0.85368 0.85667 0.83459 0.81123 0.77965 0.92134 0.95333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.77 11.20 55.49 0.62 -25.15 16 2 C 0.01 0.14 4.92 -17.43 -0.09 0.06 16 3 Si 0.90 21.19 29.59 -169.99 -5.03 16.16 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.26 -6.92 9.58 -15.06 -0.14 -7.06 16 8 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 9 N -0.59 -14.34 2.99 -172.32 -0.52 -14.86 16 10 C 0.17 4.11 5.30 -3.71 -0.02 4.09 16 11 C -0.15 -2.90 5.65 -26.61 -0.15 -3.05 16 12 C 0.16 2.97 2.12 -67.88 -0.14 2.82 16 13 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 14 N -0.71 -10.96 4.87 -54.81 -0.27 -11.23 16 15 C 0.56 9.27 7.73 -12.48 -0.10 9.18 16 16 O -0.56 -10.71 14.82 5.29 0.08 -10.63 16 17 C -0.14 -2.02 5.88 -104.87 -0.62 -2.64 16 18 C -0.06 -0.67 9.52 -39.14 -0.37 -1.04 16 19 C -0.16 -1.52 10.00 -39.67 -0.40 -1.92 16 20 C -0.05 -0.46 10.09 -39.22 -0.40 -0.85 16 21 C -0.12 -1.47 6.37 -105.15 -0.67 -2.14 16 22 C -0.21 -2.05 11.09 -37.64 -0.42 -2.47 16 23 C 0.05 0.48 11.82 -16.71 -0.20 0.28 16 24 N -0.58 -7.21 5.87 -10.45 -0.06 -7.27 16 25 H 0.43 5.45 7.54 -40.82 -0.31 5.14 16 26 C 0.15 2.07 6.87 -83.76 -0.58 1.50 16 27 C 0.08 1.35 3.14 -26.61 -0.08 1.27 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 O -0.57 -8.53 13.16 -35.23 -0.46 -8.99 16 30 C 0.12 2.45 6.14 -3.71 -0.02 2.43 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.09 2.47 6.06 -51.93 -0.31 2.15 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.40 5.09 6.62 -40.82 -0.27 4.82 16 37 H 0.13 1.16 6.37 -52.49 -0.33 0.82 16 38 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 39 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.37 3.97 9.08 45.56 0.41 4.39 16 43 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 360.38 15.07 5.43 5.43 Total: -1.00 -33.17 360.38 -9.57 -42.74 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -4.97 Total: 13.35 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -4.39 Total: 0.45 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: -0.22 Total: -58.51 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.39 Total: -19.62 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.17 -9.57 -42.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090584849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.884 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds