Wall clock time and date at job start Tue Mar 31 2020 06:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00289 * 2 1 4 4 H 1.48500 * 109.47349 * 270.00480 * 3 2 1 5 5 H 1.48508 * 109.47009 * 30.00172 * 3 2 1 6 6 H 1.48502 * 109.47158 * 150.00250 * 3 2 1 7 7 C 1.38816 * 119.99516 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99458 * 163.08026 * 7 2 1 9 9 N 1.36933 * 120.00203 * 343.08552 * 7 2 1 10 10 C 1.46932 * 120.62900 * 331.80364 * 9 7 2 11 11 C 1.53185 * 108.76598 * 233.64180 * 10 9 7 12 12 C 1.53040 * 109.31332 * 305.34652 * 11 10 9 13 13 H 1.09005 * 109.46029 * 301.37053 * 12 11 10 14 14 N 1.46507 * 109.45965 * 181.39737 * 12 11 10 15 15 C 1.34780 * 119.99374 * 84.97624 * 14 12 11 16 16 O 1.21588 * 120.00563 * 359.97438 * 15 14 12 17 17 C 1.47506 * 119.99335 * 179.97438 * 15 14 12 18 18 C 1.39346 * 120.21290 * 0.02562 * 17 15 14 19 19 C 1.38319 * 120.49462 * 179.74614 * 18 17 15 20 20 C 1.37906 * 120.59847 * 0.27255 * 19 18 17 21 21 C 1.39542 * 119.98755 * 359.97438 * 20 19 18 22 22 C 1.46569 * 133.95814 * 180.02562 * 21 20 19 23 23 C 1.34213 * 106.89195 * 180.02562 * 22 21 20 24 24 N 1.36902 * 109.88511 * 359.97438 * 23 22 21 25 25 H 0.96999 * 125.01823 * 180.02562 * 24 23 22 26 26 C 1.37130 * 109.96593 * 0.02562 * 24 23 22 27 27 C 1.53041 * 109.52945 * 61.38774 * 12 11 10 28 28 H 1.09007 * 109.49510 * 58.60800 * 27 12 11 29 29 O 1.42890 * 109.50129 * 178.67576 * 27 12 11 30 30 C 1.46927 * 120.63091 * 151.83418 * 9 7 2 31 31 H 0.97008 * 120.00068 * 359.97438 * 1 2 3 32 32 H 1.08994 * 109.58753 * 353.42625 * 10 9 7 33 33 H 1.09001 * 109.57916 * 113.84723 * 10 9 7 34 34 H 1.09003 * 109.48531 * 185.40027 * 11 10 9 35 35 H 1.09006 * 109.51129 * 65.30360 * 11 10 9 36 36 H 0.96998 * 120.00276 * 264.97354 * 14 12 11 37 37 H 1.07996 * 119.74908 * 0.02562 * 18 17 15 38 38 H 1.08007 * 119.69910 * 180.24739 * 19 18 17 39 39 H 1.07994 * 120.00856 * 179.97438 * 20 19 18 40 40 H 1.08001 * 126.55509 * 359.97270 * 22 21 20 41 41 H 1.08002 * 125.05653 * 179.97438 * 23 22 21 42 42 H 0.96699 * 114.00464 * 179.97438 * 29 27 12 43 43 H 1.09002 * 109.58604 * 6.57583 * 30 9 7 44 44 H 1.08998 * 109.70028 * 246.21703 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2728 9 7 1.3699 -2.3626 0.3440 10 6 0.2263 -2.3411 1.2662 11 6 0.4987 -3.3207 2.4120 12 6 0.8130 -4.7020 1.8329 13 1 -0.0274 -5.0419 1.2277 14 7 1.0414 -5.6494 2.9269 15 6 -0.0031 -6.2725 3.5077 16 8 -1.1349 -6.0480 3.1241 17 6 0.2268 -7.2268 4.6087 18 6 1.5220 -7.4869 5.0521 19 6 1.7439 -8.3767 6.0876 20 6 0.6888 -9.0250 6.6944 21 6 -0.6171 -8.7852 6.2649 22 6 -1.9315 -9.2873 6.6754 23 6 -2.8401 -8.6906 5.8883 24 7 -2.2136 -7.8483 5.0095 25 1 -2.6623 -7.3068 4.3414 26 6 -0.8579 -7.8833 5.2131 27 6 2.0681 -4.6178 0.9612 28 1 2.9033 -4.2547 1.5601 29 8 2.3787 -5.9138 0.4458 30 6 1.8138 -3.6528 -0.2011 31 1 -0.4851 0.8401 0.0004 32 1 0.0993 -1.3357 1.6675 33 1 -0.6770 -2.6416 0.7352 34 1 -0.3815 -3.3860 3.0516 35 1 1.3488 -2.9695 2.9969 36 1 1.9442 -5.8283 3.2331 37 1 2.3583 -6.9866 4.5868 38 1 2.7528 -8.5657 6.4237 39 1 0.8730 -9.7181 7.5018 40 1 -2.1307 -10.0017 7.4605 41 1 -3.9069 -8.8509 5.9404 42 1 3.1645 -5.9353 -0.1174 43 1 2.7342 -3.5127 -0.7679 44 1 1.0417 -4.0614 -0.8530 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090584849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:00 Heat of formation + Delta-G solvation = -28.128517 kcal Electronic energy + Delta-G solvation = -27927.011867 eV Core-core repulsion = 24037.105919 eV Total energy + Delta-G solvation = -3889.905948 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.33203 -40.95127 -39.38244 -37.72175 -37.00241 -35.80240 -33.90532 -33.00794 -31.71172 -30.51422 -30.21001 -29.53172 -27.10481 -25.08377 -23.99133 -23.52848 -22.73317 -21.98737 -21.46460 -21.02329 -19.26609 -18.74548 -18.07704 -18.01959 -17.31357 -17.08165 -16.73265 -16.15505 -15.95958 -15.72416 -15.47612 -15.24346 -15.09616 -14.90981 -14.86055 -14.47741 -13.96729 -13.90078 -13.65800 -13.50992 -13.30037 -13.00713 -12.77128 -12.72259 -12.56789 -12.42448 -12.33145 -12.11725 -12.10796 -11.90507 -11.43209 -11.12523 -10.90987 -10.74581 -10.58698 -10.10845 -9.22772 -8.78790 -8.71129 -7.92254 -5.40209 -0.28011 0.66061 1.47206 1.49102 1.54933 1.58738 2.07741 2.08754 2.30309 2.47921 2.96727 3.09356 3.25398 3.59453 3.64286 3.80362 3.88584 4.02002 4.03353 4.11022 4.19177 4.32912 4.36037 4.45600 4.49538 4.65307 4.66067 4.80747 4.86779 4.91279 4.95775 4.98286 5.03630 5.09235 5.33261 5.35784 5.42248 5.55011 5.57303 5.63084 5.77120 5.82044 6.16957 6.31848 6.48601 6.61284 6.87153 7.07389 7.16816 7.75539 8.28674 9.15292 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.021224 B = 0.002744 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.968467 B =10202.071738 C =10646.214163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.051 4.051 3 Si 0.972 3.028 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.264 1.264 7 C -0.266 4.266 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.182 3.818 11 C -0.128 4.128 12 C 0.171 3.829 13 H 0.054 0.946 14 N -0.697 5.697 15 C 0.555 3.445 16 O -0.594 6.594 17 C -0.176 4.176 18 C -0.055 4.055 19 C -0.159 4.159 20 C -0.039 4.039 21 C -0.143 4.143 22 C -0.210 4.210 23 C 0.043 3.957 24 N -0.592 5.592 25 H 0.421 0.579 26 C 0.116 3.884 27 C 0.103 3.897 28 H 0.076 0.924 29 O -0.571 6.571 30 C 0.118 3.882 31 H 0.251 0.749 32 H 0.063 0.937 33 H -0.010 1.010 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.412 0.588 37 H 0.149 0.851 38 H 0.164 0.836 39 H 0.158 0.842 40 H 0.177 0.823 41 H 0.204 0.796 42 H 0.397 0.603 43 H 0.078 0.922 44 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.226 -20.134 14.652 25.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.799 3.201 4 H -0.211 1.211 5 H -0.222 1.222 6 H -0.189 1.189 7 C -0.396 4.396 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.055 3.945 11 C -0.169 4.169 12 C 0.066 3.934 13 H 0.072 0.928 14 N -0.346 5.346 15 C 0.345 3.655 16 O -0.477 6.477 17 C -0.182 4.182 18 C -0.074 4.074 19 C -0.177 4.177 20 C -0.057 4.057 21 C -0.148 4.148 22 C -0.234 4.234 23 C -0.082 4.082 24 N -0.195 5.195 25 H 0.259 0.741 26 C 0.005 3.995 27 C 0.041 3.959 28 H 0.094 0.906 29 O -0.378 6.378 30 C -0.009 4.009 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.008 0.992 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.250 0.750 37 H 0.166 0.834 38 H 0.181 0.819 39 H 0.175 0.825 40 H 0.194 0.806 41 H 0.221 0.779 42 H 0.247 0.753 43 H 0.096 0.904 44 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 2.737 -19.947 14.600 24.870 hybrid contribution 0.258 1.686 -1.114 2.037 sum 2.995 -18.261 13.485 22.897 Atomic orbital electron populations 1.70209 1.06993 1.26083 1.55001 1.25914 0.95998 1.01924 1.00848 0.85220 0.78161 0.79097 0.77603 1.21096 1.22222 1.18895 1.19567 0.93128 0.85398 1.41477 0.90433 1.44245 1.35682 1.02306 1.50528 1.20521 0.87842 0.97536 0.88569 1.22322 1.01127 0.94475 0.98930 1.20654 0.97376 0.88354 0.86994 0.92762 1.45714 1.09891 1.43329 1.35713 1.18663 0.84488 0.80127 0.82172 1.90652 1.24169 1.66823 1.66061 1.18984 0.93929 1.03936 1.01370 1.21380 0.93766 0.96432 0.95839 1.21203 1.00682 0.98483 0.97372 1.21155 0.89506 0.97010 0.98027 1.19682 0.95793 1.00804 0.98477 1.22079 0.89189 1.06877 1.05227 1.22613 1.00278 0.93501 0.91831 1.42235 1.04954 1.39302 1.32980 0.74079 1.18388 0.84416 0.98827 0.97879 1.22308 0.95655 0.83314 0.94576 0.90604 1.86461 1.52343 1.28628 1.70394 1.21692 0.98757 0.86258 0.94187 0.94031 0.91881 0.99178 0.92761 0.91088 0.75034 0.83393 0.81872 0.82452 0.80609 0.77885 0.75305 0.90404 0.97154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.82 11.20 21.65 0.24 -55.58 16 2 C -0.05 -2.83 4.92 84.86 0.42 -2.41 16 3 Si 0.97 43.93 29.59 68.60 2.03 45.96 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 7 C -0.27 -14.16 9.58 84.03 0.81 -13.36 16 8 H 0.08 3.89 7.88 -2.91 -0.02 3.87 16 9 N -0.60 -29.89 2.99 -699.10 -2.09 -31.98 16 10 C 0.18 9.13 5.30 86.36 0.46 9.59 16 11 C -0.13 -5.22 5.65 30.67 0.17 -5.05 16 12 C 0.17 6.29 2.12 45.02 0.10 6.39 16 13 H 0.05 2.38 7.58 -2.38 -0.02 2.36 16 14 N -0.70 -21.23 4.87 -445.58 -2.17 -23.40 16 15 C 0.56 18.78 7.73 86.69 0.67 19.45 16 16 O -0.59 -24.29 14.82 -3.99 -0.06 -24.35 16 17 C -0.18 -4.91 5.88 -20.03 -0.12 -5.03 16 18 C -0.05 -1.10 9.52 22.56 0.21 -0.88 16 19 C -0.16 -2.46 10.00 22.21 0.22 -2.24 16 20 C -0.04 -0.64 10.09 22.51 0.23 -0.41 16 21 C -0.14 -3.16 6.37 -20.21 -0.13 -3.29 16 22 C -0.21 -3.72 11.09 23.53 0.26 -3.46 16 23 C 0.04 0.79 11.82 82.98 0.98 1.77 16 24 N -0.59 -15.18 5.87 -186.97 -1.10 -16.28 16 25 H 0.42 11.55 7.54 -92.71 -0.70 10.85 16 26 C 0.12 3.22 6.87 39.44 0.27 3.49 16 27 C 0.10 3.33 3.14 30.67 0.10 3.43 16 28 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 29 O -0.57 -15.69 13.16 -148.98 -1.96 -17.65 16 30 C 0.12 4.72 6.14 86.36 0.53 5.25 16 31 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 32 H 0.06 3.53 6.06 -2.39 -0.01 3.52 16 33 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 36 H 0.41 9.74 6.62 -92.71 -0.61 9.12 16 37 H 0.15 2.21 6.37 -2.91 -0.02 2.20 16 38 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 39 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 40 H 0.18 1.95 8.06 -2.91 -0.02 1.92 16 41 H 0.20 2.02 8.06 -2.91 -0.02 1.99 16 42 H 0.40 7.08 9.08 -74.06 -0.67 6.41 16 43 H 0.08 2.82 7.93 -2.39 -0.02 2.80 16 44 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -75.90 360.38 -0.85 -76.75 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: -0.92 Total: 33.31 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 5.18 Total: 13.22 kcal Atomic # 7 Polarization: -122.12 SS G_CDS: -5.12 Total: -127.24 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -2.02 Total: -42.00 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -75.90 -0.85 -76.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090584849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.626 kcal (2) G-P(sol) polarization free energy of solvation -75.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds