Wall clock time and date at job start Tue Mar 31 2020 06:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99858 * 2 1 4 4 H 1.48507 * 109.46895 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47623 * 299.99888 * 3 2 1 6 6 H 1.48494 * 109.47048 * 60.00483 * 3 2 1 7 7 C 1.38813 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99712 * 163.07624 * 7 2 1 9 9 N 1.36938 * 119.99814 * 343.08140 * 7 2 1 10 10 C 1.46928 * 120.62972 * 151.83553 * 9 7 2 11 11 C 1.53193 * 108.77614 * 126.36747 * 10 9 7 12 12 C 1.53041 * 109.31328 * 54.63120 * 11 10 9 13 13 H 1.09003 * 109.45797 * 58.64633 * 12 11 10 14 14 N 1.46496 * 109.45672 * 178.61704 * 12 11 10 15 15 C 1.34783 * 119.99970 * 275.02340 * 14 12 11 16 16 O 1.21595 * 119.99779 * 0.02562 * 15 14 12 17 17 C 1.47499 * 120.00064 * 180.02562 * 15 14 12 18 18 C 1.39347 * 120.21166 * 0.02886 * 17 15 14 19 19 C 1.38322 * 120.49794 * 179.67895 * 18 17 15 20 20 C 1.37915 * 120.59048 * 0.57696 * 19 18 17 21 21 C 1.39541 * 119.99105 * 359.44755 * 20 19 18 22 22 C 1.46560 * 133.96117 * 180.25834 * 21 20 19 23 23 C 1.34208 * 106.89523 * 179.97438 * 22 21 20 24 24 N 1.36905 * 109.88227 * 359.97438 * 23 22 21 25 25 H 0.97001 * 125.00988 * 180.02562 * 24 23 22 26 26 C 1.37115 * 109.96613 * 359.97438 * 24 23 22 27 27 C 1.53035 * 109.52758 * 298.63075 * 12 11 10 28 28 H 1.09002 * 109.49795 * 181.32116 * 27 12 11 29 29 O 1.42901 * 109.49737 * 301.41665 * 27 12 11 30 30 C 1.46927 * 120.63215 * 331.80913 * 9 7 2 31 31 H 0.97002 * 119.99999 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.58756 * 6.57806 * 10 9 7 33 33 H 1.08996 * 109.58311 * 246.15578 * 10 9 7 34 34 H 1.09001 * 109.49703 * 294.68096 * 11 10 9 35 35 H 1.08999 * 109.49694 * 174.58484 * 11 10 9 36 36 H 0.96997 * 120.00275 * 95.03235 * 14 12 11 37 37 H 1.08004 * 119.74679 * 359.97438 * 18 17 15 38 38 H 1.07997 * 119.70214 * 180.27515 * 19 18 17 39 39 H 1.07995 * 119.99947 * 179.72121 * 20 19 18 40 40 H 1.08005 * 126.55217 * 359.97438 * 22 21 20 41 41 H 1.08005 * 125.05580 * 180.02562 * 23 22 21 42 42 H 0.96703 * 114.00025 * 179.97438 * 29 27 12 43 43 H 1.09003 * 109.58369 * 353.41753 * 30 9 7 44 44 H 1.08996 * 109.58727 * 113.70126 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0552 -1.2223 -0.2728 9 7 1.3700 -2.3625 0.3441 10 6 1.8139 -3.6528 -0.2009 11 6 2.0682 -4.6177 0.9614 12 6 0.8132 -4.7020 1.8332 13 1 -0.0272 -5.0419 1.2280 14 7 1.0416 -5.6492 2.9271 15 6 0.8377 -6.9670 2.7311 16 8 0.4645 -7.3696 1.6461 17 6 1.0671 -7.9207 3.8326 18 6 1.4942 -7.4640 5.0779 19 6 1.7048 -8.3525 6.1170 20 6 1.5073 -9.7052 5.9348 21 6 1.0801 -10.1872 4.6969 22 6 0.7761 -11.5225 4.1749 23 6 0.4055 -11.3657 2.8946 24 7 0.4475 -10.0397 2.5567 25 1 0.2221 -9.6802 1.6844 26 6 0.8541 -9.2948 3.6337 27 6 0.4989 -3.3207 2.4121 28 1 -0.3814 -3.3859 3.0517 29 8 1.6133 -2.8600 3.1789 30 6 0.2263 -2.3411 1.2663 31 1 -0.4850 0.8401 -0.0004 32 1 2.7343 -3.5128 -0.7677 33 1 1.0401 -4.0602 -0.8515 34 1 2.9033 -4.2541 1.5601 35 1 2.3051 -5.6064 0.5682 36 1 1.3395 -5.3281 3.7925 37 1 1.6573 -6.4079 5.2343 38 1 2.0315 -7.9840 7.0782 39 1 1.6789 -10.3907 6.7513 40 1 0.8384 -12.4546 4.7170 41 1 0.1163 -12.1665 2.2300 42 1 1.4837 -1.9880 3.5764 43 1 0.0994 -1.3356 1.6676 44 1 -0.6773 -2.6391 0.7347 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090584850.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:05 Heat of formation + Delta-G solvation = -2.591901 kcal Electronic energy + Delta-G solvation = -28033.386295 eV Core-core repulsion = 24144.587698 eV Total energy + Delta-G solvation = -3888.798597 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.50287 -39.65571 -37.93593 -36.88985 -34.81587 -34.33923 -32.47051 -31.81552 -29.85809 -29.43324 -29.12921 -28.58416 -25.32554 -23.89213 -22.39972 -22.03339 -21.82412 -21.03491 -20.15783 -19.47264 -18.13344 -17.34710 -16.98048 -16.27944 -16.04885 -15.48170 -15.12329 -15.07355 -14.87740 -14.24692 -14.14211 -14.03090 -13.83202 -13.75208 -13.31526 -13.22650 -12.88167 -12.69667 -12.17076 -12.02409 -11.98788 -11.77636 -11.55920 -11.28921 -11.16473 -10.83154 -10.59337 -10.50448 -10.20895 -10.05673 -9.91971 -9.84510 -9.63050 -9.20554 -8.75109 -8.52748 -8.42731 -7.92036 -6.70205 -5.83798 -3.24820 0.56803 1.45789 2.37687 3.04940 3.07586 3.31563 3.35473 3.42720 3.45470 3.84533 4.45986 4.49512 4.62836 4.77504 4.80932 4.89225 5.06322 5.20363 5.28922 5.34628 5.38353 5.44268 5.55297 5.61397 5.70635 5.73536 5.93162 6.01680 6.11341 6.19255 6.24508 6.32352 6.43478 6.48093 6.53636 6.54499 6.77244 6.82473 6.93677 6.97039 7.14609 7.40283 7.42329 7.71462 7.76942 8.21498 8.34939 8.40801 9.15731 9.78683 10.35711 11.25078 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.028893 B = 0.002661 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.866866 B =10518.419922 C =11065.018606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.001 4.001 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.242 4.242 8 H 0.066 0.934 9 N -0.583 5.583 10 C 0.148 3.852 11 C -0.136 4.136 12 C 0.163 3.837 13 H 0.091 0.909 14 N -0.710 5.710 15 C 0.558 3.442 16 O -0.558 6.558 17 C -0.146 4.146 18 C -0.059 4.059 19 C -0.159 4.159 20 C -0.045 4.045 21 C -0.124 4.124 22 C -0.207 4.207 23 C 0.050 3.950 24 N -0.579 5.579 25 H 0.428 0.572 26 C 0.150 3.850 27 C 0.073 3.927 28 H 0.044 0.956 29 O -0.560 6.560 30 C 0.146 3.854 31 H 0.253 0.747 32 H 0.057 0.943 33 H 0.019 0.981 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.402 0.598 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.148 0.852 41 H 0.172 0.828 42 H 0.375 0.625 43 H 0.096 0.904 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.610 -19.268 12.346 22.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.199 4.199 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.372 4.372 8 H 0.084 0.916 9 N -0.305 5.305 10 C 0.022 3.978 11 C -0.176 4.176 12 C 0.059 3.941 13 H 0.108 0.892 14 N -0.360 5.360 15 C 0.346 3.654 16 O -0.439 6.439 17 C -0.152 4.152 18 C -0.079 4.079 19 C -0.178 4.178 20 C -0.064 4.064 21 C -0.129 4.129 22 C -0.232 4.232 23 C -0.077 4.077 24 N -0.181 5.181 25 H 0.268 0.732 26 C 0.039 3.961 27 C 0.012 3.988 28 H 0.061 0.939 29 O -0.365 6.365 30 C 0.018 3.982 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.037 0.963 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.238 0.762 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.165 0.835 41 H 0.189 0.811 42 H 0.222 0.778 43 H 0.114 0.886 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 0.451 -19.925 11.192 22.858 hybrid contribution 0.133 1.731 0.175 1.745 sum 0.584 -18.195 11.366 21.461 Atomic orbital electron populations 1.70027 1.05219 1.25400 1.54596 1.25035 0.95302 0.98400 1.01185 0.86209 0.79411 0.83859 0.77232 1.20261 1.21805 1.21617 1.19227 0.92589 0.84631 1.40722 0.91626 1.43885 1.35470 1.01762 1.49391 1.20891 0.97875 0.86425 0.92657 1.22304 0.97557 0.99276 0.98471 1.21034 0.99321 0.86279 0.87457 0.89151 1.46113 1.67690 1.05961 1.16195 1.18193 0.77258 0.82599 0.87321 1.90671 1.48307 1.78579 1.26333 1.19027 1.10426 0.90266 0.95495 1.21101 0.95798 0.99875 0.91150 1.20800 1.04867 0.92840 0.99286 1.20687 0.95415 0.95253 0.95037 1.19226 1.06572 0.93224 0.93829 1.21668 1.10763 0.95977 0.94771 1.21954 1.03112 0.85458 0.97182 1.42022 1.57213 1.05680 1.13220 0.73219 1.17967 0.99013 0.91230 0.87929 1.22834 0.87651 0.94056 0.94288 0.93851 1.86344 1.41863 1.38690 1.69625 1.21433 0.89690 0.98348 0.88686 0.93691 0.92434 0.96288 0.91155 0.92956 0.76243 0.85189 0.85310 0.85645 0.83452 0.81128 0.77767 0.88616 0.95436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.56 11.20 55.49 0.62 -24.94 16 2 C 0.00 -0.04 4.92 -17.43 -0.09 -0.12 16 3 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.52 9.58 -15.06 -0.14 -6.66 16 8 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.58 -14.30 2.93 -172.32 -0.51 -14.81 16 10 C 0.15 3.22 6.52 -3.71 -0.02 3.20 16 11 C -0.14 -2.60 5.51 -26.61 -0.15 -2.74 16 12 C 0.16 2.91 2.20 -67.89 -0.15 2.76 16 13 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 14 N -0.71 -10.83 5.00 -54.82 -0.27 -11.10 16 15 C 0.56 8.87 7.73 -12.48 -0.10 8.77 16 16 O -0.56 -10.21 14.82 5.28 0.08 -10.13 16 17 C -0.15 -2.00 5.88 -104.87 -0.62 -2.62 16 18 C -0.06 -0.65 9.52 -39.14 -0.37 -1.03 16 19 C -0.16 -1.50 10.00 -39.67 -0.40 -1.90 16 20 C -0.05 -0.44 10.09 -39.21 -0.40 -0.83 16 21 C -0.12 -1.44 6.37 -105.15 -0.67 -2.11 16 22 C -0.21 -1.97 11.09 -37.65 -0.42 -2.39 16 23 C 0.05 0.45 11.82 -16.71 -0.20 0.25 16 24 N -0.58 -6.88 5.87 -10.45 -0.06 -6.94 16 25 H 0.43 5.14 7.54 -40.82 -0.31 4.83 16 26 C 0.15 2.01 6.87 -83.76 -0.58 1.43 16 27 C 0.07 1.32 3.38 -26.61 -0.09 1.23 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 O -0.56 -9.72 12.08 -35.23 -0.43 -10.15 16 30 C 0.15 3.29 4.95 -3.71 -0.02 3.27 16 31 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 1.41 7.61 -51.93 -0.40 1.02 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.40 5.36 6.27 -40.82 -0.26 5.10 16 37 H 0.13 1.20 6.38 -52.48 -0.33 0.87 16 38 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.15 1.01 8.06 -52.48 -0.42 0.58 16 41 H 0.17 0.90 8.06 -52.48 -0.42 0.48 16 42 H 0.38 5.63 9.08 45.56 0.41 6.04 16 43 H 0.10 2.37 6.06 -51.93 -0.31 2.05 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 358.69 15.07 5.41 5.41 Total: -1.00 -32.33 358.69 -9.52 -41.85 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -4.93 Total: 14.04 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -4.40 Total: 0.51 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.22 Total: -57.80 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.35 Total: -20.28 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.33 -9.52 -41.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090584850.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.262 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds