Wall clock time and date at job start Tue Mar 31 2020 06:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00041 * 2 1 4 4 H 1.48499 * 109.47407 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47306 * 300.00656 * 3 2 1 6 6 H 1.48502 * 109.46787 * 60.00216 * 3 2 1 7 7 C 1.38810 * 120.00470 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00248 * 197.36436 * 7 2 1 9 9 N 1.36945 * 119.99637 * 17.36594 * 7 2 1 10 10 C 1.46928 * 120.63111 * 27.67920 * 9 7 2 11 11 C 1.53191 * 108.77353 * 126.39008 * 10 9 7 12 12 C 1.53043 * 109.31243 * 54.63673 * 11 10 9 13 13 H 1.08997 * 109.46225 * 58.64865 * 12 11 10 14 14 N 1.46501 * 109.45850 * 178.61294 * 12 11 10 15 15 C 1.34783 * 119.99925 * 275.06599 * 14 12 11 16 16 O 1.21597 * 119.99596 * 359.97438 * 15 14 12 17 17 C 1.47504 * 119.99729 * 180.02562 * 15 14 12 18 18 C 1.39340 * 120.21007 * 359.97438 * 17 15 14 19 19 C 1.38324 * 120.49997 * 179.97438 * 18 17 15 20 20 C 1.37906 * 120.58730 * 359.97438 * 19 18 17 21 21 C 1.39547 * 119.99158 * 0.02562 * 20 19 18 22 22 C 1.46562 * 133.95066 * 179.97438 * 21 20 19 23 23 C 1.34218 * 106.88959 * 180.02562 * 22 21 20 24 24 N 1.36897 * 109.88231 * 0.02562 * 23 22 21 25 25 H 0.97006 * 125.01900 * 180.02562 * 24 23 22 26 26 C 1.37129 * 109.97024 * 359.71308 * 24 23 22 27 27 C 1.53040 * 109.53651 * 298.63192 * 12 11 10 28 28 H 1.09001 * 109.52302 * 301.39677 * 27 12 11 29 29 O 1.42902 * 109.49884 * 181.31879 * 27 12 11 30 30 C 1.46929 * 120.62577 * 207.67770 * 9 7 2 31 31 H 0.97000 * 120.00650 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.58585 * 6.60218 * 10 9 7 33 33 H 1.08998 * 109.69855 * 246.24843 * 10 9 7 34 34 H 1.09000 * 109.49750 * 294.68564 * 11 10 9 35 35 H 1.09001 * 109.49685 * 174.58630 * 11 10 9 36 36 H 0.97000 * 120.00039 * 95.06706 * 14 12 11 37 37 H 1.08003 * 119.75159 * 359.97438 * 18 17 15 38 38 H 1.07998 * 119.70668 * 180.02562 * 19 18 17 39 39 H 1.07997 * 120.00445 * 180.02562 * 20 19 18 40 40 H 1.07994 * 126.55828 * 0.02562 * 22 21 20 41 41 H 1.08003 * 125.05632 * 179.97438 * 23 22 21 42 42 H 0.96696 * 113.99852 * 180.16193 * 29 27 12 43 43 H 1.09005 * 109.58370 * 113.82390 * 30 9 7 44 44 H 1.08994 * 109.58909 * 353.39446 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0533 -1.2235 0.2786 9 7 1.3724 -2.3609 -0.3551 10 6 0.2280 -2.3338 -1.2761 11 6 0.5013 -3.3030 -2.4306 12 6 0.8193 -4.6885 -1.8638 13 1 -0.0198 -5.0356 -1.2609 14 7 1.0487 -5.6258 -2.9661 15 6 0.0051 -6.2457 -3.5519 16 8 -1.1269 -6.0272 -3.1652 17 6 0.2362 -7.1898 -4.6614 18 6 1.5315 -7.4437 -5.1076 19 6 1.7552 -8.3284 -6.1472 20 6 0.7009 -8.9737 -6.7586 21 6 -0.6057 -8.7361 -6.3297 22 6 -1.9193 -9.2364 -6.7447 23 6 -2.8293 -8.6428 -5.9567 24 7 -2.2042 -7.8043 -5.0734 25 1 -2.6539 -7.2660 -4.4034 26 6 -0.8477 -7.8430 -5.2708 27 6 2.0749 -4.6091 -0.9924 28 1 2.9091 -4.2389 -1.5883 29 8 2.3887 -5.9090 -0.4884 30 6 1.8195 -3.6548 0.1785 31 1 -0.4851 0.8400 0.0004 32 1 0.0986 -1.3252 -1.6686 33 1 -0.6755 -2.6394 -0.7486 34 1 1.3500 -2.9446 -3.0132 35 1 -0.3794 -3.3648 -3.0699 36 1 1.9518 -5.8004 -3.2743 37 1 2.3673 -6.9461 -4.6383 38 1 2.7645 -8.5160 -6.4826 39 1 0.8863 -9.6629 -7.5692 40 1 -2.1172 -9.9468 -7.5336 41 1 -3.8961 -8.8022 -6.0120 42 1 3.1737 -5.9332 0.0756 43 1 1.0471 -4.0695 0.8262 44 1 2.7401 -3.5178 0.7457 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090584852.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:14 Heat of formation + Delta-G solvation = -3.819675 kcal Electronic energy + Delta-G solvation = -27927.246511 eV Core-core repulsion = 24038.394674 eV Total energy + Delta-G solvation = -3888.851837 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.47186 -39.63624 -37.94296 -36.86274 -35.42939 -34.34227 -32.39674 -31.74246 -30.14156 -29.55682 -28.96239 -28.35134 -25.35159 -23.88658 -22.41644 -22.05230 -21.82073 -21.01743 -20.20114 -19.55125 -18.13119 -17.28436 -16.91814 -16.54676 -16.25531 -15.85293 -15.10477 -14.99080 -14.82107 -14.25659 -14.12897 -14.03509 -13.91878 -13.65440 -13.31190 -13.18472 -12.79439 -12.73544 -12.31062 -12.11661 -11.96797 -11.73473 -11.64077 -11.50681 -11.13467 -10.91253 -10.69369 -10.34772 -10.27761 -9.98272 -9.89320 -9.86092 -9.73771 -9.45645 -8.80153 -8.48992 -8.40088 -7.89144 -6.80325 -5.87447 -3.31518 0.59812 1.48177 2.41262 3.09537 3.11088 3.31178 3.35308 3.40300 3.42226 3.87951 4.34397 4.48651 4.52342 4.68584 4.78876 4.90575 5.09047 5.22396 5.27347 5.30481 5.37510 5.45489 5.52843 5.63197 5.72625 5.73683 5.76782 5.94719 6.08696 6.13128 6.28101 6.33825 6.45610 6.47853 6.51650 6.57408 6.64200 6.74343 6.83244 6.97328 7.25908 7.45101 7.57802 7.70866 7.71818 7.89960 8.34845 8.38714 9.10483 9.72983 10.28660 11.21156 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.021171 B = 0.002746 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.229630 B =10192.948376 C =10637.378059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.259 4.259 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.146 4.146 12 C 0.163 3.837 13 H 0.088 0.912 14 N -0.708 5.708 15 C 0.561 3.439 16 O -0.555 6.555 17 C -0.144 4.144 18 C -0.060 4.060 19 C -0.159 4.159 20 C -0.046 4.046 21 C -0.123 4.123 22 C -0.208 4.208 23 C 0.050 3.950 24 N -0.578 5.578 25 H 0.428 0.572 26 C 0.150 3.850 27 C 0.080 3.920 28 H 0.057 0.943 29 O -0.571 6.571 30 C 0.121 3.879 31 H 0.255 0.745 32 H 0.093 0.907 33 H 0.023 0.977 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.396 0.604 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.148 0.852 41 H 0.172 0.828 42 H 0.374 0.626 43 H 0.029 0.971 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.507 -18.090 -12.839 22.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.388 4.388 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.187 4.187 12 C 0.059 3.941 13 H 0.106 0.894 14 N -0.357 5.357 15 C 0.349 3.651 16 O -0.436 6.436 17 C -0.150 4.150 18 C -0.080 4.080 19 C -0.178 4.178 20 C -0.065 4.065 21 C -0.128 4.128 22 C -0.233 4.233 23 C -0.076 4.076 24 N -0.181 5.181 25 H 0.268 0.732 26 C 0.038 3.962 27 C 0.019 3.981 28 H 0.075 0.925 29 O -0.375 6.375 30 C -0.007 4.007 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.231 0.769 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.165 0.835 41 H 0.189 0.811 42 H 0.220 0.780 43 H 0.047 0.953 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.042 -17.849 -12.771 21.948 hybrid contribution 1.113 1.206 0.499 1.715 sum 1.071 -16.643 -12.273 20.707 Atomic orbital electron populations 1.70041 1.05314 1.25659 1.53230 1.25072 0.95300 0.98564 1.00508 0.86210 0.79319 0.83764 0.77363 1.20208 1.21447 1.21629 1.19201 0.92734 0.84638 1.42263 0.91455 1.44058 1.35861 1.01034 1.50260 1.20823 0.88678 0.98413 0.87554 1.22607 1.01043 0.94233 1.00778 1.21029 0.97610 0.89265 0.86156 0.89392 1.45980 1.09104 1.44619 1.35961 1.18130 0.85051 0.79989 0.81974 1.90682 1.22599 1.65295 1.64980 1.19027 0.92266 1.02958 1.00707 1.21057 0.94535 0.96614 0.95792 1.20784 0.99038 0.99654 0.98344 1.20676 0.90336 0.97426 0.98032 1.19225 0.94073 1.00991 0.98501 1.21663 0.90106 1.06759 1.04729 1.21959 0.98590 0.94450 0.92634 1.42036 1.04836 1.38931 1.32287 0.73170 1.17969 0.83883 0.97713 0.96606 1.22781 0.95950 0.83149 0.96262 0.92549 1.86489 1.50814 1.30171 1.70043 1.21528 0.98809 0.87408 0.92923 0.93475 0.88845 0.95845 0.92290 0.91970 0.76911 0.85356 0.85365 0.85666 0.83460 0.81122 0.77965 0.95318 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.76 11.19 55.49 0.62 -25.14 16 2 C 0.00 0.13 4.91 -17.43 -0.09 0.04 16 3 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.26 -6.89 9.59 -15.06 -0.14 -7.03 16 8 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.33 3.00 -172.32 -0.52 -14.85 16 10 C 0.17 4.10 5.31 -3.71 -0.02 4.08 16 11 C -0.15 -2.90 5.65 -26.61 -0.15 -3.05 16 12 C 0.16 2.96 2.12 -67.89 -0.14 2.82 16 13 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 14 N -0.71 -10.96 4.87 -54.81 -0.27 -11.22 16 15 C 0.56 9.27 7.73 -12.48 -0.10 9.17 16 16 O -0.56 -10.71 14.83 5.28 0.08 -10.63 16 17 C -0.14 -2.02 5.88 -104.88 -0.62 -2.64 16 18 C -0.06 -0.67 9.52 -39.14 -0.37 -1.04 16 19 C -0.16 -1.52 10.00 -39.67 -0.40 -1.92 16 20 C -0.05 -0.46 10.09 -39.22 -0.40 -0.85 16 21 C -0.12 -1.47 6.37 -105.15 -0.67 -2.14 16 22 C -0.21 -2.05 11.09 -37.64 -0.42 -2.47 16 23 C 0.05 0.48 11.82 -16.71 -0.20 0.28 16 24 N -0.58 -7.21 5.87 -10.45 -0.06 -7.27 16 25 H 0.43 5.45 7.54 -40.82 -0.31 5.14 16 26 C 0.15 2.07 6.87 -83.76 -0.58 1.50 16 27 C 0.08 1.35 3.14 -26.61 -0.08 1.26 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 O -0.57 -8.52 13.16 -35.23 -0.46 -8.98 16 30 C 0.12 2.45 6.14 -3.71 -0.02 2.42 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 32 H 0.09 2.48 6.04 -51.93 -0.31 2.17 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.40 5.08 6.62 -40.82 -0.27 4.81 16 37 H 0.13 1.16 6.38 -52.48 -0.33 0.82 16 38 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.17 0.98 8.06 -52.48 -0.42 0.56 16 42 H 0.37 3.97 9.08 45.56 0.41 4.38 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 LS Contribution 360.35 15.07 5.43 5.43 Total: -1.00 -33.17 360.35 -9.57 -42.74 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -4.97 Total: 13.31 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -4.39 Total: 0.45 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.22 Total: -58.48 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.39 Total: -19.61 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.17 -9.57 -42.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090584852.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.918 kcal (2) G-P(sol) polarization free energy of solvation -33.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds