Wall clock time and date at job start Tue Mar 31 2020 06:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48504 * 109.46788 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47041 * 299.99656 * 3 2 1 6 6 H 1.48497 * 109.47258 * 59.99785 * 3 2 1 7 7 C 1.38815 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99853 * 163.17555 * 7 2 1 9 9 N 1.36933 * 119.99826 * 343.17890 * 7 2 1 10 10 C 1.46930 * 120.63005 * 151.86766 * 9 7 2 11 11 C 1.53196 * 108.77199 * 126.11515 * 10 9 7 12 12 C 1.53033 * 109.31405 * 54.63584 * 11 10 9 13 13 H 1.08998 * 109.45769 * 178.62363 * 12 11 10 14 14 N 1.46501 * 109.45995 * 58.65577 * 12 11 10 15 15 C 1.34776 * 120.00264 * 84.99972 * 14 12 11 16 16 O 1.21644 * 120.00024 * 359.97438 * 15 14 12 17 17 C 1.47056 * 119.99941 * 179.97438 * 15 14 12 18 18 C 1.35871 * 125.43164 * 179.97438 * 17 15 14 19 19 C 1.41580 * 107.72721 * 179.97438 * 18 17 15 20 20 C 1.40110 * 133.37887 * 180.02562 * 19 18 17 21 21 C 1.36429 * 119.83024 * 180.02562 * 20 19 18 22 22 C 1.38935 * 120.61947 * 359.91453 * 21 20 19 23 23 C 1.37675 * 120.64730 * 0.06590 * 22 21 20 24 24 C 1.39226 * 119.80932 * 359.97438 * 23 22 21 25 25 N 1.37480 * 133.17987 * 180.29693 * 24 23 22 26 26 H 0.96996 * 125.60697 * 359.96398 * 25 24 23 27 27 C 1.53031 * 109.54059 * 298.63287 * 12 11 10 28 28 H 1.09005 * 109.49738 * 301.38321 * 27 12 11 29 29 O 1.42903 * 109.50230 * 181.31794 * 27 12 11 30 30 C 1.46923 * 120.63142 * 331.58665 * 9 7 2 31 31 H 0.97002 * 120.00123 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.58579 * 245.89878 * 10 9 7 33 33 H 1.08997 * 109.58590 * 6.32998 * 10 9 7 34 34 H 1.09004 * 109.49340 * 174.58975 * 11 10 9 35 35 H 1.09001 * 109.49507 * 294.64560 * 11 10 9 36 36 H 0.97004 * 119.99952 * 264.99548 * 14 12 11 37 37 H 1.07998 * 126.13255 * 359.94615 * 18 17 15 38 38 H 1.08008 * 120.07782 * 0.02562 * 20 19 18 39 39 H 1.08001 * 119.69195 * 179.97438 * 21 20 19 40 40 H 1.08003 * 119.68045 * 180.02562 * 22 21 20 41 41 H 1.08005 * 120.09376 * 179.97438 * 23 22 21 42 42 H 0.96697 * 114.00073 * 179.97438 * 29 27 12 43 43 H 1.08999 * 109.59186 * 353.67075 * 30 9 7 44 44 H 1.08997 * 109.58930 * 114.09788 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0556 -1.2223 -0.2702 9 7 1.3695 -2.3625 0.3442 10 6 1.8147 -3.6528 -0.1995 11 6 2.0730 -4.6154 0.9640 12 6 0.8198 -4.7005 1.8382 13 1 0.9926 -5.4035 2.6531 14 7 -0.3103 -5.1610 1.0277 15 6 -0.5102 -6.4803 0.8380 16 8 0.2481 -7.2887 1.3393 17 6 -1.6450 -6.9426 0.0249 18 6 -1.9489 -8.2406 -0.2376 19 6 -3.1082 -8.2561 -1.0501 20 6 -3.8690 -9.2844 -1.6218 21 6 -4.9633 -8.9795 -2.3773 22 6 -5.3335 -7.6566 -2.5851 23 6 -4.6024 -6.6284 -2.0338 24 6 -3.4811 -6.9140 -1.2596 25 7 -2.5755 -6.1266 -0.5889 26 1 -2.5867 -5.1573 -0.5542 27 6 0.5037 -3.3189 2.4155 28 1 1.3539 -2.9651 2.9988 29 8 -0.6486 -3.4054 3.2562 30 6 0.2276 -2.3416 1.2685 31 1 -0.4850 0.8401 -0.0004 32 1 1.0404 -4.0628 -0.8479 33 1 2.7338 -3.5121 -0.7682 34 1 2.3110 -5.6043 0.5720 35 1 2.9090 -4.2495 1.5601 36 1 -0.9149 -4.5165 0.6277 37 1 -1.4036 -9.1053 0.1107 38 1 -3.5898 -10.3159 -1.4646 39 1 -5.5480 -9.7739 -2.8172 40 1 -6.2028 -7.4324 -3.1855 41 1 -4.8980 -5.6032 -2.2014 42 1 -0.9069 -2.5643 3.6573 43 1 0.0995 -1.3357 1.6685 44 1 -0.6761 -2.6446 0.7398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090795841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:52 Heat of formation + Delta-G solvation = -3.005669 kcal Electronic energy + Delta-G solvation = -28182.331034 eV Core-core repulsion = 24293.514495 eV Total energy + Delta-G solvation = -3888.816540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.61091 -39.73791 -37.94634 -36.77469 -35.39239 -34.25258 -32.30455 -32.04890 -30.16126 -29.37516 -29.08710 -28.70857 -25.55503 -24.07655 -22.44987 -22.21570 -21.90856 -21.31422 -20.16179 -18.86898 -18.50770 -17.21519 -17.06611 -16.65727 -15.96207 -15.50490 -15.24202 -15.01388 -14.74273 -14.30500 -14.21433 -14.00432 -13.85358 -13.77350 -13.51796 -13.40922 -12.96647 -12.79606 -12.37872 -11.96868 -11.86521 -11.78326 -11.67886 -11.18143 -11.11745 -11.03395 -10.92388 -10.52122 -10.30040 -10.09747 -10.01598 -9.97679 -9.69330 -9.44486 -8.86814 -8.65987 -8.32439 -7.85624 -6.88315 -5.98890 -3.42632 0.72044 1.52361 2.11239 2.87112 3.24951 3.28562 3.34476 3.36316 3.45557 3.80917 4.31790 4.48473 4.58410 4.80718 4.89846 5.01567 5.15925 5.22717 5.29046 5.30001 5.33683 5.44884 5.59302 5.63869 5.72320 5.82812 5.86516 5.92242 5.92972 6.12067 6.28951 6.33368 6.35669 6.43413 6.50658 6.60214 6.61676 6.67991 6.79653 6.93034 6.97959 7.27525 7.29811 7.62756 7.68654 7.99059 8.24606 8.29416 8.99819 9.62325 10.17810 11.09467 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.015640 B = 0.003184 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.801258 B = 8791.993729 C = 9729.041620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.588 5.588 10 C 0.145 3.855 11 C -0.146 4.146 12 C 0.166 3.834 13 H 0.083 0.917 14 N -0.700 5.700 15 C 0.581 3.419 16 O -0.532 6.532 17 C 0.028 3.972 18 C -0.116 4.116 19 C -0.119 4.119 20 C -0.063 4.063 21 C -0.152 4.152 22 C -0.093 4.093 23 C -0.130 4.130 24 C 0.112 3.888 25 N -0.575 5.575 26 H 0.421 0.579 27 C 0.065 3.935 28 H 0.065 0.935 29 O -0.573 6.573 30 C 0.147 3.853 31 H 0.255 0.745 32 H 0.018 0.982 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.400 0.600 37 H 0.155 0.845 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.377 0.623 43 H 0.094 0.906 44 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.241 -12.698 -1.058 15.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.312 5.312 10 C 0.019 3.981 11 C -0.186 4.186 12 C 0.061 3.939 13 H 0.101 0.899 14 N -0.351 5.351 15 C 0.366 3.634 16 O -0.409 6.409 17 C -0.082 4.082 18 C -0.143 4.143 19 C -0.123 4.123 20 C -0.081 4.081 21 C -0.171 4.171 22 C -0.113 4.113 23 C -0.150 4.150 24 C 0.001 3.999 25 N -0.179 5.179 26 H 0.259 0.741 27 C 0.005 3.995 28 H 0.083 0.917 29 O -0.378 6.378 30 C 0.020 3.980 31 H 0.065 0.935 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.235 0.765 37 H 0.172 0.828 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.224 0.776 43 H 0.112 0.888 44 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -7.674 -13.567 -0.816 15.608 hybrid contribution 0.030 2.439 -0.073 2.440 sum -7.643 -11.128 -0.889 13.529 Atomic orbital electron populations 1.70010 1.05293 1.25660 1.53790 1.25070 0.95351 0.98587 1.00513 0.86197 0.79463 0.83607 0.77363 1.20135 1.21605 1.21480 1.19252 0.92748 0.84519 1.41920 0.91311 1.43966 1.35764 1.01940 1.49498 1.20931 0.97983 0.86342 0.92865 1.22422 0.96448 1.00471 0.99244 1.20881 0.85515 0.94783 0.92688 0.89911 1.45908 1.30685 1.06180 1.52286 1.17175 0.83258 0.82855 0.80075 1.90808 1.46152 1.54016 1.49961 1.20302 0.94107 0.91020 1.02732 1.20857 0.97159 0.95340 1.00929 1.18216 0.98256 0.92562 1.03298 1.20384 0.94038 0.97910 0.95813 1.20603 0.98397 0.96439 1.01668 1.20848 0.99102 0.92242 0.99076 1.20125 0.94603 0.99973 1.00327 1.18353 0.93302 0.90403 0.97834 1.42053 1.23399 1.08761 1.43664 0.74070 1.22963 0.87991 0.95672 0.92922 0.91728 1.86415 1.48390 1.36949 1.66030 1.21385 0.89406 0.98625 0.88603 0.93546 0.96375 0.92277 0.91501 0.90843 0.76453 0.82759 0.85867 0.86050 0.85690 0.85894 0.77635 0.88816 0.96161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.17 11.20 55.49 0.62 -23.55 16 2 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 3 Si 0.90 20.50 29.59 -169.99 -5.03 15.47 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.26 -6.51 9.58 -15.06 -0.14 -6.66 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -13.40 2.99 -172.32 -0.52 -13.91 16 10 C 0.14 2.87 6.26 -3.71 -0.02 2.84 16 11 C -0.15 -2.52 5.77 -26.61 -0.15 -2.68 16 12 C 0.17 2.87 2.47 -67.90 -0.17 2.70 16 13 H 0.08 1.49 7.57 -51.93 -0.39 1.10 16 14 N -0.70 -11.49 4.15 -54.97 -0.23 -11.72 16 15 C 0.58 9.75 7.76 -12.69 -0.10 9.65 16 16 O -0.53 -10.22 16.50 5.24 0.09 -10.13 16 17 C 0.03 0.42 6.97 -82.29 -0.57 -0.15 16 18 C -0.12 -1.62 10.53 -39.16 -0.41 -2.03 16 19 C -0.12 -1.55 6.16 -106.93 -0.66 -2.21 16 20 C -0.06 -0.67 10.06 -39.53 -0.40 -1.07 16 21 C -0.15 -1.43 9.96 -39.98 -0.40 -1.83 16 22 C -0.09 -0.88 10.01 -39.53 -0.40 -1.28 16 23 C -0.13 -1.42 10.08 -39.42 -0.40 -1.81 16 24 C 0.11 1.44 7.25 -83.98 -0.61 0.83 16 25 N -0.57 -7.53 6.07 -7.36 -0.04 -7.58 16 26 H 0.42 4.92 8.12 -40.82 -0.33 4.59 16 27 C 0.07 1.16 3.36 -26.61 -0.09 1.07 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 O -0.57 -9.36 13.21 -35.23 -0.47 -9.83 16 30 C 0.15 3.08 4.64 -3.71 -0.02 3.06 16 31 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 32 H 0.02 0.37 7.74 -51.93 -0.40 -0.03 16 33 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.40 6.40 5.92 -40.82 -0.24 6.16 16 37 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 38 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 39 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 40 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 41 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 42 H 0.38 4.89 9.08 45.56 0.41 5.30 16 43 H 0.09 2.22 6.06 -51.93 -0.31 1.90 16 44 H 0.02 0.44 6.64 -51.93 -0.34 0.10 16 LS Contribution 360.80 15.07 5.44 5.44 Total: -1.00 -30.35 360.80 -9.72 -40.07 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -4.96 Total: 15.31 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -4.62 Total: 0.45 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.17 Total: -56.76 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.38 Total: -19.96 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.35 -9.72 -40.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090795841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.064 kcal (2) G-P(sol) polarization free energy of solvation -30.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds