Wall clock time and date at job start Tue Mar 31 2020 06:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00041 * 2 1 4 4 H 1.48494 * 109.47648 * 270.00530 * 3 2 1 5 5 H 1.48507 * 109.46657 * 30.00379 * 3 2 1 6 6 H 1.48497 * 109.47094 * 149.99949 * 3 2 1 7 7 C 1.38810 * 120.00470 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00372 * 197.35708 * 7 2 1 9 9 N 1.36945 * 119.99610 * 17.35758 * 7 2 1 10 10 C 1.46926 * 120.63209 * 27.68307 * 9 7 2 11 11 C 1.53187 * 108.77487 * 126.39128 * 10 9 7 12 12 C 1.53049 * 109.31337 * 54.63587 * 11 10 9 13 13 H 1.08999 * 109.46088 * 58.65254 * 12 11 10 14 14 N 1.46498 * 109.45961 * 178.61259 * 12 11 10 15 15 C 1.34772 * 119.99746 * 275.06313 * 14 12 11 16 16 O 1.21642 * 120.00708 * 0.02562 * 15 14 12 17 17 C 1.47065 * 119.99726 * 179.97438 * 15 14 12 18 18 C 1.35868 * 125.43073 * 179.69851 * 17 15 14 19 19 C 1.41585 * 107.72426 * 179.84912 * 18 17 15 20 20 C 1.40103 * 133.37808 * 180.12974 * 19 18 17 21 21 C 1.36440 * 119.83218 * 180.30279 * 20 19 18 22 22 C 1.38943 * 120.61257 * 0.02562 * 21 20 19 23 23 C 1.37667 * 120.65051 * 359.97438 * 22 21 20 24 24 C 1.39229 * 119.81058 * 359.97438 * 23 22 21 25 25 N 1.37479 * 133.17889 * 180.02562 * 24 23 22 26 26 H 0.96996 * 125.60644 * 359.96291 * 25 24 23 27 27 C 1.53040 * 109.53586 * 298.63455 * 12 11 10 28 28 H 1.09003 * 109.52515 * 301.39593 * 27 12 11 29 29 O 1.42894 * 109.49941 * 181.31620 * 27 12 11 30 30 C 1.46926 * 120.62880 * 207.68431 * 9 7 2 31 31 H 0.97000 * 120.00650 * 359.97438 * 1 2 3 32 32 H 1.08994 * 109.58447 * 6.60177 * 10 9 7 33 33 H 1.08999 * 109.70080 * 246.24849 * 10 9 7 34 34 H 1.08994 * 109.50056 * 294.68606 * 11 10 9 35 35 H 1.09000 * 109.49857 * 174.58427 * 11 10 9 36 36 H 0.97004 * 119.99992 * 95.06767 * 14 12 11 37 37 H 1.08003 * 126.13524 * 0.02562 * 18 17 15 38 38 H 1.08004 * 120.08452 * 0.28955 * 20 19 18 39 39 H 1.08002 * 119.69308 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.67068 * 180.02562 * 22 21 20 41 41 H 1.07998 * 120.09308 * 180.02562 * 23 22 21 42 42 H 0.96692 * 114.00682 * 180.16023 * 29 27 12 43 43 H 1.09003 * 109.58984 * 113.81556 * 30 9 7 44 44 H 1.09001 * 109.58684 * 353.39320 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0533 -1.2235 0.2784 9 7 1.3723 -2.3609 -0.3549 10 6 0.2279 -2.3339 -1.2759 11 6 0.5010 -3.3032 -2.4302 12 6 0.8191 -4.6888 -1.8633 13 1 -0.0200 -5.0358 -1.2603 14 7 1.0484 -5.6262 -2.9655 15 6 0.0047 -6.2460 -3.5510 16 8 -1.1277 -6.0269 -3.1647 17 6 0.2348 -7.1867 -4.6578 18 6 -0.7314 -7.8740 -5.3212 19 6 -0.0968 -8.6626 -6.3112 20 6 -0.5719 -9.5564 -7.2799 21 6 0.3075 -10.1876 -8.1104 22 6 1.6730 -9.9533 -8.0050 23 6 2.1644 -9.0797 -7.0614 24 6 1.2869 -8.4225 -6.2030 25 7 1.4684 -7.5161 -5.1855 26 1 2.3222 -7.1666 -4.8861 27 6 2.0747 -4.6093 -0.9919 28 1 2.9089 -4.2391 -1.5879 29 8 2.3885 -5.9090 -0.4878 30 6 1.8194 -3.6548 0.1787 31 1 -0.4851 0.8400 0.0004 32 1 0.0985 -1.3254 -1.6684 33 1 -0.6756 -2.6394 -0.7482 34 1 1.3496 -2.9451 -3.0130 35 1 -0.3797 -3.3651 -3.0694 36 1 1.9514 -5.8008 -3.2738 37 1 -1.7932 -7.8251 -5.1297 38 1 -1.6316 -9.7454 -7.3689 39 1 -0.0612 -10.8759 -8.8566 40 1 2.3554 -10.4609 -8.6706 41 1 3.2274 -8.9039 -6.9876 42 1 3.1736 -5.9332 0.0761 43 1 1.0471 -4.0694 0.8266 44 1 2.7401 -3.5177 0.7459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090795843.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:02 Heat of formation + Delta-G solvation = -3.376677 kcal Electronic energy + Delta-G solvation = -27504.135800 eV Core-core repulsion = 23615.303172 eV Total energy + Delta-G solvation = -3888.832628 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.74421 -39.67043 -38.02892 -36.90912 -35.48614 -34.49863 -32.39702 -32.04044 -30.39477 -29.57487 -29.14146 -28.50169 -25.51078 -23.92440 -22.52433 -22.31207 -21.90705 -21.16790 -20.17175 -19.59784 -18.48365 -17.37405 -17.06675 -16.68184 -16.18821 -15.73604 -15.29830 -15.05786 -14.79719 -14.31072 -14.15215 -14.08063 -14.00796 -13.75064 -13.62552 -13.24616 -13.06401 -12.82252 -12.37090 -12.18829 -11.97444 -11.81483 -11.64860 -11.17858 -11.16008 -10.93071 -10.77123 -10.41522 -10.31307 -10.14001 -10.10961 -9.97962 -9.82085 -9.55728 -8.93080 -8.53897 -8.45207 -7.99191 -6.83599 -5.89619 -3.34219 0.59006 1.38269 1.99416 2.69683 3.13912 3.31564 3.35094 3.38139 3.39837 3.67765 4.29004 4.42731 4.45484 4.67151 4.76442 4.87941 5.07326 5.17379 5.18688 5.26623 5.31001 5.41116 5.44892 5.50275 5.68176 5.74901 5.80102 5.87834 6.01939 6.17232 6.19399 6.27606 6.37152 6.40458 6.43738 6.47614 6.59682 6.69849 6.72762 6.84146 7.13544 7.22625 7.53099 7.57052 7.68216 7.82653 8.20132 8.32415 9.07928 9.70194 10.25692 11.18944 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.024074 B = 0.002410 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.810621 B =11617.413828 C =11739.829261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.006 3.994 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.261 4.261 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.147 4.147 12 C 0.163 3.837 13 H 0.092 0.908 14 N -0.712 5.712 15 C 0.579 3.421 16 O -0.520 6.520 17 C 0.027 3.973 18 C -0.113 4.113 19 C -0.118 4.118 20 C -0.061 4.061 21 C -0.152 4.152 22 C -0.092 4.092 23 C -0.132 4.132 24 C 0.110 3.890 25 N -0.578 5.578 26 H 0.417 0.583 27 C 0.079 3.921 28 H 0.056 0.944 29 O -0.572 6.572 30 C 0.121 3.879 31 H 0.256 0.744 32 H 0.094 0.906 33 H 0.025 0.975 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.391 0.609 37 H 0.156 0.844 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.375 0.625 43 H 0.030 0.970 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.140 -18.418 -13.691 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.194 4.194 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.391 4.391 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.044 3.956 11 C -0.187 4.187 12 C 0.060 3.940 13 H 0.110 0.890 14 N -0.361 5.361 15 C 0.364 3.636 16 O -0.396 6.396 17 C -0.083 4.083 18 C -0.140 4.140 19 C -0.123 4.123 20 C -0.079 4.079 21 C -0.171 4.171 22 C -0.111 4.111 23 C -0.153 4.153 24 C 0.000 4.000 25 N -0.182 5.182 26 H 0.255 0.745 27 C 0.018 3.982 28 H 0.074 0.926 29 O -0.376 6.376 30 C -0.007 4.007 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.224 0.776 37 H 0.174 0.826 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.139 0.861 42 H 0.221 0.779 43 H 0.048 0.952 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.763 -18.140 -13.592 22.978 hybrid contribution 1.891 1.138 0.323 2.230 sum 5.653 -17.002 -13.270 22.296 Atomic orbital electron populations 1.70027 1.05293 1.25844 1.52974 1.25079 0.95314 0.98576 1.00410 0.86258 0.79073 0.83457 0.77748 1.21332 1.21634 1.20399 1.19160 0.92718 0.84632 1.42544 0.91484 1.44056 1.35857 1.01025 1.50250 1.20839 0.88745 0.98446 0.87527 1.22625 1.01141 0.94079 1.00905 1.21097 0.97841 0.89201 0.85905 0.89020 1.46018 1.08559 1.45049 1.36441 1.17183 0.85470 0.79692 0.81208 1.90863 1.22000 1.63560 1.63154 1.20350 0.84898 1.03126 0.99901 1.20923 0.99311 0.97722 0.96022 1.18231 0.92238 1.01922 0.99886 1.20423 0.99801 0.94351 0.93357 1.20628 0.93234 1.02192 1.01035 1.20858 0.95616 0.97252 0.97386 1.20070 0.98289 0.99841 0.97090 1.18348 0.95246 0.94324 0.92085 1.41967 1.07940 1.38306 1.29993 0.74454 1.22790 0.95824 0.83203 0.96334 0.92621 1.86478 1.50883 1.30188 1.70061 1.21523 0.98898 0.87412 0.92845 0.93353 0.88745 0.95649 0.92328 0.91727 0.77637 0.82606 0.85736 0.85950 0.85665 0.86057 0.77893 0.95188 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.52 11.19 55.49 0.62 -24.90 16 2 C 0.01 0.15 4.91 -17.43 -0.09 0.07 16 3 Si 0.91 21.04 29.59 -169.99 -5.03 16.01 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.26 -6.86 9.59 -15.06 -0.14 -7.00 16 8 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 9 N -0.59 -14.09 3.00 -172.33 -0.52 -14.61 16 10 C 0.17 4.01 5.31 -3.71 -0.02 3.99 16 11 C -0.15 -2.83 5.65 -26.61 -0.15 -2.98 16 12 C 0.16 2.85 2.12 -67.89 -0.14 2.71 16 13 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 14 N -0.71 -10.35 4.91 -54.95 -0.27 -10.62 16 15 C 0.58 9.17 7.76 -12.68 -0.10 9.08 16 16 O -0.52 -10.15 16.50 5.24 0.09 -10.06 16 17 C 0.03 0.36 6.97 -82.29 -0.57 -0.22 16 18 C -0.11 -1.46 10.53 -39.16 -0.41 -1.88 16 19 C -0.12 -1.38 6.16 -106.93 -0.66 -2.04 16 20 C -0.06 -0.58 10.06 -39.53 -0.40 -0.98 16 21 C -0.15 -1.23 9.97 -39.97 -0.40 -1.63 16 22 C -0.09 -0.72 10.01 -39.53 -0.40 -1.11 16 23 C -0.13 -1.16 10.08 -39.42 -0.40 -1.56 16 24 C 0.11 1.20 7.25 -83.97 -0.61 0.59 16 25 N -0.58 -6.07 6.07 -7.35 -0.04 -6.11 16 26 H 0.42 3.25 8.12 -40.82 -0.33 2.92 16 27 C 0.08 1.30 3.14 -26.61 -0.08 1.21 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 O -0.57 -8.17 13.16 -35.23 -0.46 -8.63 16 30 C 0.12 2.39 6.14 -3.71 -0.02 2.37 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.09 2.47 6.03 -51.93 -0.31 2.16 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.39 4.54 7.66 -40.82 -0.31 4.23 16 37 H 0.16 1.91 8.06 -52.48 -0.42 1.48 16 38 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 39 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.37 3.78 9.08 45.56 0.41 4.19 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 LS Contribution 364.99 15.07 5.50 5.50 Total: -1.00 -32.62 364.99 -9.83 -42.45 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -5.13 Total: 10.35 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -4.59 Total: 0.61 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.21 Total: -56.24 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.38 Total: -18.69 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.62 -9.83 -42.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090795843.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.077 kcal (2) G-P(sol) polarization free energy of solvation -32.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds