Wall clock time and date at job start Tue Mar 31 2020 06:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 120.00074 * 2 1 4 4 H 1.48500 * 109.46737 * 272.92600 * 3 2 1 5 5 H 1.48492 * 109.47339 * 32.92501 * 3 2 1 6 6 H 1.48504 * 109.47205 * 152.92672 * 3 2 1 7 7 C 1.38811 * 119.99411 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00519 * 339.37170 * 7 2 1 9 9 N 1.36938 * 119.99643 * 159.37743 * 7 2 1 10 10 C 1.46935 * 120.62904 * 332.60324 * 9 7 2 11 11 C 1.53195 * 108.76249 * 233.63873 * 10 9 7 12 12 C 1.53035 * 109.31679 * 305.34463 * 11 10 9 13 13 H 1.08998 * 109.45724 * 301.37506 * 12 11 10 14 14 N 1.46497 * 109.46299 * 181.39737 * 12 11 10 15 15 C 1.34782 * 119.99667 * 84.97060 * 14 12 11 16 16 O 1.21643 * 119.99795 * 0.02562 * 15 14 12 17 17 C 1.47056 * 119.99737 * 179.97438 * 15 14 12 18 18 C 1.35869 * 125.42991 * 180.02562 * 17 15 14 19 19 C 1.41587 * 107.72989 * 180.02562 * 18 17 15 20 20 C 1.40101 * 133.37917 * 180.02562 * 19 18 17 21 21 C 1.36434 * 119.82649 * 180.02562 * 20 19 18 22 22 C 1.38941 * 120.61757 * 359.95379 * 21 20 19 23 23 C 1.37668 * 120.65170 * 0.05002 * 22 21 20 24 24 C 1.39227 * 119.80478 * 359.97232 * 23 22 21 25 25 N 1.37486 * 133.17836 * 180.34951 * 24 23 22 26 26 H 0.96999 * 125.60400 * 359.93363 * 25 24 23 27 27 C 1.53042 * 109.52509 * 61.38475 * 12 11 10 28 28 H 1.08997 * 109.49933 * 58.61346 * 27 12 11 29 29 O 1.42906 * 109.49532 * 178.67680 * 27 12 11 30 30 C 1.46922 * 120.63510 * 152.62843 * 9 7 2 31 31 H 0.96996 * 119.99436 * 0.02562 * 1 2 3 32 32 H 1.08990 * 109.58568 * 353.41820 * 10 9 7 33 33 H 1.08998 * 109.58605 * 113.84996 * 10 9 7 34 34 H 1.08996 * 109.48365 * 185.39674 * 11 10 9 35 35 H 1.09004 * 109.50566 * 65.30658 * 11 10 9 36 36 H 0.96999 * 120.00397 * 264.69833 * 14 12 11 37 37 H 1.08005 * 126.13514 * 0.02562 * 18 17 15 38 38 H 1.07999 * 120.08701 * 0.02562 * 20 19 18 39 39 H 1.08002 * 119.69370 * 180.02562 * 21 20 19 40 40 H 1.08005 * 119.67121 * 180.02562 * 22 21 20 41 41 H 1.07994 * 120.09747 * 179.97438 * 23 22 21 42 42 H 0.96698 * 113.99726 * 179.97438 * 29 27 12 43 43 H 1.09001 * 109.58205 * 6.57863 * 30 9 7 44 44 H 1.09002 * 109.70565 * 246.22913 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4358 2.0820 -1.3983 5 1 1.4801 2.6340 0.7609 6 1 3.5774 1.4230 0.6372 7 6 2.0102 -1.2022 0.0005 8 1 1.5222 -2.1073 0.3304 9 7 3.3138 -1.2404 -0.4172 10 6 3.8178 -0.2596 -1.3881 11 6 4.4621 -1.0103 -2.5578 12 6 5.5287 -1.9666 -2.0194 13 1 6.2779 -1.4005 -1.4661 14 7 6.1701 -2.6620 -3.1380 15 6 7.1997 -2.0850 -3.7889 16 8 7.5965 -0.9870 -3.4472 17 6 7.8439 -2.7832 -4.9113 18 6 8.8858 -2.3067 -5.6417 19 6 9.2054 -3.2776 -6.6214 20 6 10.1692 -3.3395 -7.6364 21 6 10.2338 -4.4365 -8.4449 22 6 9.3523 -5.4964 -8.2713 23 6 8.3964 -5.4593 -7.2813 24 6 8.3102 -4.3505 -6.4437 25 7 7.4892 -4.0302 -5.3885 26 1 6.7765 -4.5871 -5.0382 27 6 4.8746 -2.9913 -1.0898 28 1 4.1082 -3.5412 -1.6360 29 8 5.8661 -3.9028 -0.6117 30 6 4.2348 -2.2633 0.0966 31 1 -0.4849 0.8401 -0.0004 32 1 2.9915 0.3489 -1.7553 33 1 4.5606 0.3792 -0.9102 34 1 4.9245 -0.2953 -3.2381 35 1 3.6992 -1.5786 -3.0900 36 1 5.8565 -3.5394 -3.4077 37 1 9.3813 -1.3575 -5.5003 38 1 10.8592 -2.5208 -7.7784 39 1 10.9779 -4.4821 -9.2263 40 1 9.4174 -6.3576 -8.9199 41 1 7.7155 -6.2880 -7.1546 42 1 5.5215 -4.5814 -0.0152 43 1 3.6836 -2.9769 0.7090 44 1 5.0117 -1.7901 0.6971 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090795844.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:06 Heat of formation + Delta-G solvation = 2.569292 kcal Electronic energy + Delta-G solvation = -27603.747385 eV Core-core repulsion = 23715.172594 eV Total energy + Delta-G solvation = -3888.574791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.80406 -39.82499 -38.23161 -36.97019 -35.73454 -34.64011 -32.44873 -32.15995 -30.65601 -29.71718 -29.34699 -28.94954 -25.58284 -23.87278 -22.85837 -22.44017 -22.01326 -21.25551 -20.33303 -19.86614 -18.56393 -17.43778 -17.17026 -16.80551 -16.34651 -15.90410 -15.39186 -15.24148 -14.78873 -14.56935 -14.37599 -14.27733 -14.10438 -13.91045 -13.69967 -13.32624 -13.13180 -12.88009 -12.59737 -12.35768 -12.11934 -11.99614 -11.87222 -11.64309 -11.26134 -11.21451 -11.09278 -10.37562 -10.26004 -10.16558 -10.15593 -9.97868 -9.85156 -9.59390 -9.02432 -8.72409 -8.51453 -8.04524 -7.13816 -6.05346 -3.43858 0.53346 1.33917 1.92562 2.63813 3.01642 3.25529 3.28026 3.44872 3.47789 3.63256 4.17372 4.39264 4.44779 4.57797 4.72439 4.82696 4.83254 5.02655 5.03804 5.13185 5.24599 5.25800 5.30890 5.44620 5.47338 5.65681 5.69691 5.71006 5.75334 5.90227 6.10970 6.15177 6.19595 6.23258 6.31168 6.34342 6.42026 6.44578 6.49467 6.54703 6.71807 6.79126 7.07931 7.42666 7.67962 7.84434 8.08137 8.20554 8.79536 9.59488 9.94175 11.09891 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.024109 B = 0.002578 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.135345 B =10859.842637 C =11231.331016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.027 3.973 3 Si 0.881 3.119 4 H -0.286 1.286 5 H -0.301 1.301 6 H -0.269 1.269 7 C -0.268 4.268 8 H 0.087 0.913 9 N -0.602 5.602 10 C 0.126 3.874 11 C -0.141 4.141 12 C 0.162 3.838 13 H 0.093 0.907 14 N -0.712 5.712 15 C 0.581 3.419 16 O -0.522 6.522 17 C 0.025 3.975 18 C -0.111 4.111 19 C -0.119 4.119 20 C -0.061 4.061 21 C -0.151 4.151 22 C -0.091 4.091 23 C -0.132 4.132 24 C 0.111 3.889 25 N -0.577 5.577 26 H 0.418 0.582 27 C 0.079 3.921 28 H 0.061 0.939 29 O -0.570 6.570 30 C 0.124 3.876 31 H 0.264 0.736 32 H 0.080 0.920 33 H 0.032 0.968 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.393 0.607 37 H 0.156 0.844 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.377 0.623 43 H 0.071 0.929 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.496 -12.253 -14.177 25.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.173 4.173 3 Si 0.711 3.289 4 H -0.214 1.214 5 H -0.229 1.229 6 H -0.194 1.194 7 C -0.396 4.396 8 H 0.104 0.896 9 N -0.327 5.327 10 C 0.000 4.000 11 C -0.182 4.182 12 C 0.059 3.941 13 H 0.111 0.889 14 N -0.361 5.361 15 C 0.366 3.634 16 O -0.397 6.397 17 C -0.085 4.085 18 C -0.138 4.138 19 C -0.123 4.123 20 C -0.079 4.079 21 C -0.170 4.170 22 C -0.110 4.110 23 C -0.153 4.153 24 C 0.001 3.999 25 N -0.182 5.182 26 H 0.256 0.744 27 C 0.018 3.982 28 H 0.079 0.921 29 O -0.375 6.375 30 C -0.003 4.003 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.226 0.774 37 H 0.174 0.826 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.224 0.776 43 H 0.089 0.911 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 17.852 -11.016 -14.127 25.291 hybrid contribution -0.599 -0.149 0.382 0.726 sum 17.253 -11.165 -13.745 24.724 Atomic orbital electron populations 1.69828 1.05739 1.26789 1.52281 1.25271 0.95244 0.97701 0.99044 0.86985 0.80142 0.84481 0.77279 1.21378 1.22919 1.19361 1.18868 0.84597 0.94910 1.41182 0.89561 1.44327 1.08562 1.33096 1.46673 1.21400 0.97570 0.92076 0.88985 1.22445 0.97283 0.98576 0.99861 1.21032 0.95060 0.92697 0.85341 0.88879 1.45958 1.34014 1.21596 1.34493 1.17189 0.79713 0.85304 0.81152 1.90858 1.63728 1.19355 1.65780 1.20283 1.01034 0.87198 0.99954 1.20922 0.97244 1.00194 0.95457 1.18227 0.99225 0.95270 0.99618 1.20422 0.96321 0.98048 0.93136 1.20634 1.00913 0.94429 1.01068 1.20871 0.94567 0.98598 0.96983 1.20079 1.01729 0.96547 0.96929 1.18350 0.93482 0.96847 0.91227 1.41960 1.31376 1.16463 1.28393 0.74419 1.22745 0.89192 0.90118 0.96141 0.92086 1.86477 1.37679 1.45267 1.68054 1.21542 0.93183 0.92447 0.93143 0.92583 0.90209 0.94975 0.91250 0.91250 0.77380 0.82627 0.85727 0.85915 0.85613 0.85998 0.77607 0.91103 0.94706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.97 55.49 0.78 -26.23 16 2 C 0.03 0.76 5.23 -17.43 -0.09 0.67 16 3 Si 0.88 22.06 24.35 -169.99 -4.14 17.92 16 4 H -0.29 -6.94 6.62 56.52 0.37 -6.57 16 5 H -0.30 -7.68 7.11 56.52 0.40 -7.27 16 6 H -0.27 -6.65 6.64 56.52 0.38 -6.28 16 7 C -0.27 -7.16 10.04 -15.06 -0.15 -7.31 16 8 H 0.09 2.44 8.05 -52.49 -0.42 2.02 16 9 N -0.60 -13.62 2.77 -172.32 -0.48 -14.10 16 10 C 0.13 2.70 4.20 -3.70 -0.02 2.68 16 11 C -0.14 -2.52 5.65 -26.61 -0.15 -2.67 16 12 C 0.16 2.63 2.12 -67.89 -0.14 2.49 16 13 H 0.09 1.72 7.57 -51.93 -0.39 1.32 16 14 N -0.71 -9.62 4.92 -54.96 -0.27 -9.89 16 15 C 0.58 8.65 7.76 -12.68 -0.10 8.55 16 16 O -0.52 -9.60 16.50 5.24 0.09 -9.51 16 17 C 0.02 0.31 6.97 -82.30 -0.57 -0.26 16 18 C -0.11 -1.37 10.53 -39.15 -0.41 -1.79 16 19 C -0.12 -1.33 6.16 -106.93 -0.66 -1.99 16 20 C -0.06 -0.55 10.06 -39.53 -0.40 -0.95 16 21 C -0.15 -1.18 9.96 -39.97 -0.40 -1.57 16 22 C -0.09 -0.68 10.01 -39.53 -0.40 -1.08 16 23 C -0.13 -1.11 10.08 -39.42 -0.40 -1.51 16 24 C 0.11 1.16 7.25 -83.97 -0.61 0.55 16 25 N -0.58 -5.75 6.07 -7.36 -0.04 -5.79 16 26 H 0.42 3.03 8.12 -40.82 -0.33 2.70 16 27 C 0.08 1.20 3.14 -26.61 -0.08 1.12 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 O -0.57 -7.52 13.16 -35.23 -0.46 -7.98 16 30 C 0.12 2.27 6.14 -3.71 -0.02 2.25 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.08 1.87 4.50 -51.93 -0.23 1.64 16 33 H 0.03 0.70 7.08 -51.93 -0.37 0.33 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.39 4.21 7.65 -40.82 -0.31 3.90 16 37 H 0.16 1.81 8.06 -52.48 -0.42 1.38 16 38 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.13 0.63 8.06 -52.48 -0.42 0.20 16 41 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.38 3.43 9.08 45.56 0.41 3.85 16 43 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 358.57 15.07 5.40 5.40 Total: -1.00 -33.63 358.57 -8.78 -42.42 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -5.05 Total: 8.58 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -4.60 Total: -0.82 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.02 Total: -56.01 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.38 Total: -17.49 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.14 Total: 17.92 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.63 -8.78 -42.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090795844.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.985 kcal (2) G-P(sol) polarization free energy of solvation -33.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds