Wall clock time and date at job start Tue Mar 31 2020 05:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 120.00086 * 2 1 4 4 H 1.48500 * 109.46781 * 269.72585 * 3 2 1 5 5 H 1.48496 * 109.47225 * 29.72144 * 3 2 1 6 6 H 1.48494 * 109.47296 * 149.72155 * 3 2 1 7 7 C 1.38815 * 120.00107 * 179.71730 * 2 1 3 8 8 H 1.08000 * 119.99641 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99715 * 0.02562 * 7 2 1 10 10 C 1.47259 * 135.94879 * 359.62566 * 9 7 2 11 11 C 1.52723 * 87.62330 * 153.82303 * 10 9 7 12 12 C 1.47271 * 135.94220 * 179.97438 * 9 7 2 13 13 C 1.53386 * 115.73579 * 141.63314 * 11 10 9 14 14 C 1.54762 * 101.46712 * 156.55152 * 13 11 10 15 15 H 1.09001 * 110.47981 * 94.55044 * 14 13 11 16 16 N 1.46497 * 110.56227 * 217.08267 * 14 13 11 17 17 C 1.34776 * 120.00207 * 201.40365 * 16 14 13 18 18 O 1.21504 * 120.00021 * 359.97438 * 17 16 14 19 19 C 1.48330 * 120.00371 * 179.97438 * 17 16 14 20 20 C 1.42266 * 126.93958 * 179.71127 * 19 17 16 21 21 C 1.35323 * 103.92331 * 179.88929 * 20 19 17 22 22 O 1.34019 * 106.66358 * 0.36984 * 21 20 19 23 23 N 1.20906 * 111.84588 * 359.74423 * 22 21 20 24 24 C 1.51668 * 104.31494 * 335.83937 * 14 13 11 25 25 N 1.30855 * 141.38778 * 196.13744 * 24 14 13 26 26 C 1.33978 * 109.35159 * 180.26409 * 25 24 14 27 27 C 1.34514 * 108.05201 * 359.93642 * 26 25 24 28 28 N 1.35128 * 110.00347 * 16.25821 * 24 14 13 29 29 H 0.97000 * 120.00330 * 0.27723 * 1 2 3 30 30 H 1.08996 * 113.51119 * 268.49747 * 10 9 7 31 31 H 1.09001 * 113.50848 * 39.06503 * 10 9 7 32 32 H 1.09003 * 113.50742 * 320.94063 * 12 9 7 33 33 H 1.08994 * 113.50722 * 91.51312 * 12 9 7 34 34 H 1.08996 * 111.02566 * 274.59235 * 13 11 10 35 35 H 1.08995 * 111.02459 * 38.49328 * 13 11 10 36 36 H 0.97000 * 119.99958 * 21.40452 * 16 14 13 37 37 H 1.07998 * 128.04262 * 0.02562 * 20 19 17 38 38 H 1.07992 * 126.66760 * 180.14966 * 21 20 19 39 39 H 1.08009 * 125.97359 * 179.91218 * 26 25 24 40 40 H 1.08005 * 126.53708 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5034 2.0430 -1.4001 5 1 1.4447 2.6544 0.6941 6 1 3.5447 1.4419 0.7059 7 6 2.0102 -1.2021 0.0059 8 1 3.0902 -1.2021 0.0063 9 7 1.3255 -2.3880 0.0113 10 6 -0.0904 -2.7925 0.0193 11 6 0.3432 -4.0928 -0.6543 12 6 1.6832 -3.8166 0.0177 13 6 -0.3895 -5.3587 -0.1923 14 6 -0.1932 -6.2904 -1.4124 15 1 0.6777 -6.9297 -1.2678 16 7 -1.3915 -7.1024 -1.6377 17 6 -1.3055 -8.2509 -2.3377 18 8 -0.2341 -8.6127 -2.7822 19 6 -2.5186 -9.0735 -2.5654 20 6 -2.5981 -10.2995 -3.2826 21 6 -3.9047 -10.6416 -3.1991 22 8 -4.5108 -9.6750 -2.4958 23 7 -3.7341 -8.8147 -2.1516 24 6 0.0318 -5.3430 -2.5753 25 7 0.0330 -5.3121 -3.8834 26 6 0.3381 -4.0752 -4.2980 27 6 0.5327 -3.3073 -3.2109 28 7 0.3369 -4.1099 -2.1145 29 1 -0.4850 0.8400 -0.0041 30 1 -0.4960 -2.9358 1.0208 31 1 -0.7250 -2.1667 -0.6082 32 1 2.5417 -4.0527 -0.6111 33 1 1.7632 -4.2402 1.0187 34 1 0.0777 -5.7778 0.6988 35 1 -1.4467 -5.1576 -0.0197 36 1 -2.2469 -6.8135 -1.2832 37 1 -1.8006 -10.8343 -3.7769 38 1 -4.3695 -11.5205 -3.6205 39 1 0.4148 -3.7513 -5.3255 40 1 0.7930 -2.2592 -3.2022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092349476.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:47 Heat of formation + Delta-G solvation = 180.805849 kcal Electronic energy + Delta-G solvation = -27701.582844 eV Core-core repulsion = 23717.196627 eV Total energy + Delta-G solvation = -3984.386217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.35878 -42.23054 -39.59123 -38.59845 -35.74367 -34.26790 -33.40321 -32.17932 -31.75560 -30.51400 -28.34624 -27.43626 -25.54103 -25.14234 -23.89220 -23.25220 -21.96028 -21.34018 -20.92435 -19.84503 -18.79380 -18.73390 -18.01305 -17.13254 -16.95835 -16.36247 -15.68093 -15.12941 -14.93721 -14.80118 -14.58791 -14.13677 -14.00726 -13.79936 -13.62810 -13.57389 -13.35145 -13.08204 -12.54215 -12.19650 -12.02833 -11.97459 -11.55348 -11.46878 -10.97903 -10.89439 -10.71148 -10.40399 -10.22045 -10.12111 -10.08004 -9.71718 -9.54709 -9.35540 -9.04719 -8.90431 -7.91399 -7.15559 -5.96721 -3.31296 0.89119 1.43647 2.38701 2.73042 2.88748 3.04183 3.22927 3.29111 3.34215 3.35892 3.59856 3.73481 4.05668 4.27346 4.35068 4.47197 4.69288 4.73673 4.79573 4.97579 5.07530 5.11939 5.33721 5.38004 5.47636 5.56731 5.67543 5.73799 5.83527 5.99541 6.12736 6.14265 6.24215 6.25510 6.71416 6.88522 6.94683 7.19541 7.24388 7.30519 7.60577 7.71763 7.74903 7.96659 8.58569 8.82463 9.49442 10.34867 11.20412 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.002812 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.003887 B = 9956.647271 C =10219.929723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.003 4.003 3 Si 0.916 3.084 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.224 4.224 8 H 0.084 0.916 9 N -0.603 5.603 10 C 0.161 3.839 11 C 0.096 3.904 12 C 0.119 3.881 13 C -0.115 4.115 14 C 0.236 3.764 15 H 0.118 0.882 16 N -0.702 5.702 17 C 0.604 3.396 18 O -0.506 6.506 19 C -0.023 4.023 20 C -0.183 4.183 21 C -0.061 4.061 22 O 0.121 5.879 23 N -0.332 5.332 24 C 0.150 3.850 25 N -0.467 5.467 26 C -0.049 4.049 27 C 0.010 3.990 28 N -0.426 5.426 29 H 0.257 0.743 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.408 0.592 37 H 0.182 0.818 38 H 0.225 0.775 39 H 0.169 0.831 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.832 -19.470 -2.729 21.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.200 4.200 3 Si 0.745 3.255 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.351 4.351 8 H 0.101 0.899 9 N -0.329 5.329 10 C 0.034 3.966 11 C 0.009 3.991 12 C -0.008 4.008 13 C -0.154 4.154 14 C 0.129 3.871 15 H 0.135 0.865 16 N -0.354 5.354 17 C 0.387 3.613 18 O -0.379 6.379 19 C -0.182 4.182 20 C -0.205 4.205 21 C -0.142 4.142 22 O 0.046 5.954 23 N -0.032 5.032 24 C -0.114 4.114 25 N -0.186 5.186 26 C -0.197 4.197 27 C -0.124 4.124 28 N -0.107 5.107 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.128 0.872 35 H 0.114 0.886 36 H 0.244 0.756 37 H 0.199 0.801 38 H 0.241 0.759 39 H 0.187 0.813 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -7.570 -18.754 -2.700 20.404 hybrid contribution 0.747 1.390 0.118 1.582 sum -6.823 -17.365 -2.582 18.835 Atomic orbital electron populations 1.69787 1.05071 1.25812 1.55788 1.24805 0.95716 0.97664 1.01802 0.86072 0.78609 0.82990 0.77797 1.21304 1.21476 1.20545 1.18903 0.90185 0.81002 1.44978 0.89863 1.45608 1.01912 0.99183 1.86151 1.22313 0.89882 0.87302 0.97090 1.22510 1.00973 0.97917 0.77726 1.22652 0.93484 0.87443 0.97202 1.22766 1.02814 0.92805 0.97061 1.19972 0.89082 0.89422 0.88631 0.86482 1.45743 1.12041 1.22086 1.55512 1.16805 0.85911 0.80271 0.78267 1.90839 1.27592 1.70849 1.48587 1.23614 0.93226 0.98172 1.03233 1.22801 0.98134 0.96234 1.03348 1.26055 0.92892 0.96341 0.98918 1.84799 1.34329 1.24499 1.51819 1.74185 1.01182 1.10587 1.17286 1.24338 1.07904 0.87423 0.91711 1.69744 1.19408 1.22040 1.07455 1.22186 1.09665 0.89396 0.98452 1.22529 1.07519 0.98409 0.83986 1.45609 1.49195 1.10081 1.05860 0.93351 0.93436 0.90057 0.93220 0.92644 0.87209 0.88580 0.75583 0.80085 0.75905 0.81335 0.80976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.87 11.51 55.49 0.64 -25.23 16 2 C 0.00 -0.07 5.50 -17.43 -0.10 -0.17 16 3 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.22 -5.95 10.74 -15.06 -0.16 -6.11 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.60 -14.36 3.79 -184.72 -0.70 -15.06 16 10 C 0.16 3.44 6.94 -7.78 -0.05 3.38 16 11 C 0.10 1.68 1.64 -133.40 -0.22 1.46 16 12 C 0.12 2.26 8.18 -7.92 -0.06 2.19 16 13 C -0.11 -1.46 6.24 -25.60 -0.16 -1.62 16 14 C 0.24 3.41 3.23 -67.68 -0.22 3.19 16 15 H 0.12 1.69 7.66 -51.93 -0.40 1.29 16 16 N -0.70 -9.26 5.16 -54.35 -0.28 -9.54 16 17 C 0.60 8.71 7.84 -12.11 -0.09 8.61 16 18 O -0.51 -8.80 16.66 5.36 0.09 -8.71 16 19 C -0.02 -0.28 7.19 -82.53 -0.59 -0.87 16 20 C -0.18 -1.60 10.99 -39.07 -0.43 -2.03 16 21 C -0.06 -0.36 12.28 29.69 0.36 0.01 16 22 O 0.12 1.05 11.18 17.24 0.19 1.24 16 23 N -0.33 -3.72 11.84 33.29 0.39 -3.32 16 24 C 0.15 2.76 8.22 -154.56 -1.27 1.49 16 25 N -0.47 -9.41 11.25 -10.48 -0.12 -9.53 16 26 C -0.05 -0.91 11.86 -17.93 -0.21 -1.13 16 27 C 0.01 0.19 12.03 -16.43 -0.20 0.00 16 28 N -0.43 -8.15 3.41 -100.94 -0.34 -8.50 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 2.02 7.15 -51.93 -0.37 1.64 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.92 7.98 -51.93 -0.41 0.51 16 34 H 0.11 1.09 7.87 -51.93 -0.41 0.68 16 35 H 0.10 1.09 7.80 -51.93 -0.41 0.69 16 36 H 0.41 4.67 8.15 -40.82 -0.33 4.33 16 37 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.22 0.16 8.06 -52.49 -0.42 -0.26 16 39 H 0.17 2.62 8.06 -52.48 -0.42 2.20 16 40 H 0.17 3.49 8.06 -52.48 -0.42 3.07 16 LS Contribution 349.83 15.07 5.27 5.27 Total: -1.00 -34.97 349.83 -7.70 -42.67 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -4.41 Total: 5.96 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: -3.41 Total: 8.39 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: -0.41 Total: -71.18 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.28 Total: -7.47 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.97 -7.70 -42.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092349476.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.480 kcal (2) G-P(sol) polarization free energy of solvation -34.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds