Wall clock time and date at job start Tue Mar 31 2020 05:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00101 * 2 1 4 4 H 1.48506 * 109.47183 * 354.93421 * 3 2 1 5 5 H 1.48505 * 109.47076 * 114.92958 * 3 2 1 6 6 H 1.48499 * 109.47553 * 234.93278 * 3 2 1 7 7 C 1.38817 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99789 * 354.52645 * 7 2 1 9 9 N 1.36937 * 120.00130 * 174.52272 * 7 2 1 10 10 C 1.47263 * 135.94026 * 7.25856 * 9 7 2 11 11 C 1.52706 * 87.62560 * 153.83322 * 10 9 7 12 12 C 1.47259 * 135.94465 * 187.62448 * 9 7 2 13 13 C 1.53382 * 115.74953 * 141.62298 * 11 10 9 14 14 C 1.54760 * 101.47030 * 156.53217 * 13 11 10 15 15 H 1.09004 * 110.57206 * 217.09046 * 14 13 11 16 16 N 1.46500 * 110.45955 * 94.56479 * 14 13 11 17 17 C 1.34770 * 120.00132 * 158.64971 * 16 14 13 18 18 O 1.21498 * 120.00022 * 359.97438 * 17 16 14 19 19 C 1.48335 * 120.00317 * 179.97438 * 17 16 14 20 20 C 1.42268 * 126.93805 * 179.97438 * 19 17 16 21 21 C 1.35318 * 103.91643 * 180.02562 * 20 19 17 22 22 O 1.34005 * 106.67223 * 359.97438 * 21 20 19 23 23 N 1.20903 * 111.84808 * 359.70863 * 22 21 20 24 24 C 1.51662 * 104.32008 * 335.85464 * 14 13 11 25 25 N 1.30852 * 141.38850 * 196.11397 * 24 14 13 26 26 C 1.33975 * 109.35500 * 180.26639 * 25 24 14 27 27 C 1.34516 * 108.05068 * 359.93912 * 26 25 24 28 28 N 1.35131 * 110.00067 * 16.24150 * 24 14 13 29 29 H 0.97002 * 119.99938 * 174.79480 * 1 2 3 30 30 H 1.09000 * 113.51054 * 268.49954 * 10 9 7 31 31 H 1.08992 * 113.51184 * 39.07558 * 10 9 7 32 32 H 1.08998 * 113.51223 * 320.92329 * 12 9 7 33 33 H 1.09004 * 113.50788 * 91.50404 * 12 9 7 34 34 H 1.09000 * 111.02497 * 274.58082 * 13 11 10 35 35 H 1.08999 * 111.02257 * 38.48669 * 13 11 10 36 36 H 0.97005 * 119.99770 * 338.64762 * 16 14 13 37 37 H 1.07999 * 128.04453 * 359.97438 * 20 19 17 38 38 H 1.08005 * 126.66150 * 180.02562 * 21 20 19 39 39 H 1.07999 * 125.97753 * 179.91499 * 26 25 24 40 40 H 1.07998 * 126.53710 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2899 2.7437 -0.1236 5 1 3.0088 1.7513 1.2697 6 1 3.1943 1.6443 -1.1459 7 6 2.0103 -1.2022 -0.0005 8 1 1.4739 -2.1354 0.0883 9 7 3.3749 -1.2049 -0.1137 10 6 4.4383 -0.1861 -0.1204 11 6 5.3886 -1.2660 0.3919 12 6 4.4204 -2.2272 -0.2885 13 6 6.8104 -1.2296 -0.1823 14 6 7.6071 -1.9658 0.9215 15 1 8.5904 -1.5134 1.0506 16 7 7.7376 -3.3883 0.5965 17 6 8.7207 -4.1201 1.1570 18 8 9.4991 -3.6000 1.9316 19 6 8.8526 -5.5606 0.8284 20 6 9.8285 -6.4661 1.3302 21 6 9.5208 -7.6404 0.7322 22 8 8.4536 -7.4083 -0.0444 23 7 8.0905 -6.2570 0.0222 24 6 6.7707 -1.7825 2.1734 25 7 6.8461 -1.8768 3.4763 26 6 5.6618 -1.5555 4.0140 27 6 4.8185 -1.2487 3.0119 28 7 5.5210 -1.3903 1.8410 29 1 -0.4850 -0.8366 -0.0762 30 1 4.6880 0.1752 -1.1180 31 1 4.2711 0.6216 0.5920 32 1 4.2381 -3.1375 0.2826 33 1 4.6653 -2.4246 -1.3321 34 1 6.8640 -1.7681 -1.1284 35 1 7.1592 -0.2034 -0.2979 36 1 7.1164 -3.8034 -0.0221 37 1 10.6292 -6.2634 2.0259 38 1 10.0350 -8.5819 0.8571 39 1 5.4253 -1.5450 5.0677 40 1 3.7859 -0.9480 3.1099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092349477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:51 Heat of formation + Delta-G solvation = 186.898886 kcal Electronic energy + Delta-G solvation = -28141.496968 eV Core-core repulsion = 24157.374965 eV Total energy + Delta-G solvation = -3984.122004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.41171 -42.47985 -39.70525 -38.96685 -35.93856 -34.32820 -33.45289 -32.31105 -31.97426 -30.75371 -28.59496 -27.62408 -25.95681 -25.48651 -23.90914 -23.30928 -21.93232 -21.08173 -20.99636 -20.15571 -19.02871 -18.85311 -18.06364 -17.68418 -17.15936 -16.85137 -16.10353 -15.20701 -15.05029 -14.86781 -14.70661 -14.50079 -14.11065 -13.94595 -13.73952 -13.65488 -13.43646 -13.31859 -12.99949 -12.52431 -12.28058 -12.22861 -12.02685 -11.33839 -11.07990 -10.77472 -10.74245 -10.63535 -10.49040 -10.12786 -9.71435 -9.66508 -9.53117 -9.33083 -9.13229 -9.06874 -8.13219 -7.43494 -6.47487 -3.44910 0.83253 1.37829 2.13221 2.66313 2.82862 2.94028 2.98580 3.24040 3.27245 3.45539 3.48026 3.69100 3.83253 4.23019 4.31452 4.33543 4.41898 4.49758 4.67602 4.68889 4.92183 5.07327 5.17844 5.26885 5.31850 5.45799 5.50507 5.52159 5.55839 5.80270 5.83340 5.91143 5.98266 6.01302 6.08305 6.24909 6.71857 6.78404 7.07564 7.12658 7.37739 7.65580 7.86427 8.05668 8.40205 8.77708 9.27855 10.08719 11.01966 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.018139 B = 0.003551 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.222793 B = 7883.424351 C = 8524.052270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.018 4.018 3 Si 1.065 2.935 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.310 4.310 8 H 0.085 0.915 9 N -0.619 5.619 10 C 0.099 3.901 11 C 0.106 3.894 12 C 0.123 3.877 13 C -0.118 4.118 14 C 0.233 3.767 15 H 0.120 0.880 16 N -0.704 5.704 17 C 0.603 3.397 18 O -0.503 6.503 19 C -0.026 4.026 20 C -0.183 4.183 21 C -0.060 4.060 22 O 0.123 5.877 23 N -0.330 5.330 24 C 0.152 3.848 25 N -0.461 5.461 26 C -0.042 4.042 27 C 0.004 3.996 28 N -0.432 5.432 29 H 0.263 0.737 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.409 0.591 37 H 0.182 0.818 38 H 0.225 0.775 39 H 0.173 0.827 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.464 -11.026 -1.204 23.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.218 4.218 3 Si 0.897 3.103 4 H -0.218 1.218 5 H -0.221 1.221 6 H -0.213 1.213 7 C -0.436 4.436 8 H 0.103 0.897 9 N -0.347 5.347 10 C -0.027 4.027 11 C 0.019 3.981 12 C -0.005 4.005 13 C -0.158 4.158 14 C 0.126 3.874 15 H 0.138 0.862 16 N -0.357 5.357 17 C 0.386 3.614 18 O -0.375 6.375 19 C -0.186 4.186 20 C -0.205 4.205 21 C -0.141 4.141 22 O 0.047 5.953 23 N -0.031 5.031 24 C -0.111 4.111 25 N -0.180 5.180 26 C -0.190 4.190 27 C -0.130 4.130 28 N -0.114 5.114 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.245 0.755 37 H 0.200 0.800 38 H 0.242 0.758 39 H 0.190 0.810 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 19.938 -8.776 -0.937 21.804 hybrid contribution -0.463 -1.771 -0.096 1.833 sum 19.475 -10.548 -1.033 22.172 Atomic orbital electron populations 1.70906 1.05394 1.29426 1.51044 1.25707 0.96435 1.00865 0.98811 0.83789 0.74096 0.76317 0.76101 1.21758 1.22054 1.21288 1.20131 0.77505 0.95984 1.49983 0.89734 1.46031 1.01592 1.01240 1.85814 1.23019 0.86741 0.93623 0.99365 1.22333 0.95031 1.02740 0.77994 1.22621 0.86618 0.93773 0.97451 1.22796 0.91891 1.03032 0.98052 1.19757 0.99164 0.80961 0.87490 0.86237 1.45825 1.32280 1.10029 1.47537 1.16838 0.81264 0.82914 0.80357 1.90852 1.42573 1.70701 1.33353 1.23597 0.96974 0.97440 1.00553 1.22798 1.02396 0.91050 1.04302 1.26073 0.91212 1.01772 0.95031 1.84805 1.37306 1.22040 1.51141 1.74208 1.19957 0.91151 1.17747 1.24366 0.87050 1.06662 0.92983 1.69799 1.24496 1.19452 1.04220 1.22247 0.89307 1.08380 0.99109 1.22585 0.99766 1.07897 0.82779 1.45697 1.11711 1.48507 1.05476 0.92656 0.91427 0.91837 0.92921 0.92254 0.87111 0.87164 0.75535 0.80042 0.75846 0.81015 0.80933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.36 13.70 55.49 0.76 -27.60 16 2 C -0.02 -0.52 5.50 -17.43 -0.10 -0.62 16 3 Si 1.06 25.54 25.17 -169.99 -4.28 21.26 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -6.72 6.49 56.52 0.37 -6.36 16 6 H -0.29 -6.23 6.18 56.52 0.35 -5.88 16 7 C -0.31 -8.51 11.08 -15.06 -0.17 -8.68 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.06 16 9 N -0.62 -14.10 3.70 -184.72 -0.68 -14.78 16 10 C 0.10 1.89 5.22 -7.78 -0.04 1.85 16 11 C 0.11 1.70 1.64 -133.41 -0.22 1.48 16 12 C 0.12 2.19 8.19 -7.91 -0.06 2.13 16 13 C -0.12 -1.34 6.15 -25.61 -0.16 -1.49 16 14 C 0.23 3.10 3.23 -67.68 -0.22 2.88 16 15 H 0.12 1.53 7.66 -51.93 -0.40 1.13 16 16 N -0.70 -8.89 5.12 -54.35 -0.28 -9.17 16 17 C 0.60 8.35 7.84 -12.11 -0.09 8.26 16 18 O -0.50 -8.35 16.66 5.37 0.09 -8.26 16 19 C -0.03 -0.31 7.19 -82.52 -0.59 -0.90 16 20 C -0.18 -1.56 10.99 -39.08 -0.43 -1.99 16 21 C -0.06 -0.35 12.28 29.69 0.36 0.02 16 22 O 0.12 1.08 11.18 17.27 0.19 1.27 16 23 N -0.33 -3.72 11.84 33.29 0.39 -3.32 16 24 C 0.15 2.64 8.22 -154.57 -1.27 1.37 16 25 N -0.46 -8.81 11.25 -10.49 -0.12 -8.93 16 26 C -0.04 -0.74 11.86 -17.93 -0.21 -0.96 16 27 C 0.00 0.07 12.03 -16.43 -0.20 -0.13 16 28 N -0.43 -7.74 3.41 -100.95 -0.34 -8.08 16 29 H 0.26 7.98 8.73 -40.82 -0.36 7.62 16 30 H 0.07 1.18 7.60 -51.93 -0.39 0.79 16 31 H 0.06 1.32 4.80 -51.93 -0.25 1.07 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.92 7.98 -51.93 -0.41 0.51 16 34 H 0.11 0.95 7.75 -51.93 -0.40 0.55 16 35 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.41 4.67 8.33 -40.82 -0.34 4.33 16 37 H 0.18 1.28 8.06 -52.49 -0.42 0.85 16 38 H 0.23 0.16 8.06 -52.48 -0.42 -0.26 16 39 H 0.17 2.50 8.06 -52.49 -0.42 2.07 16 40 H 0.17 3.27 8.06 -52.49 -0.42 2.85 16 LS Contribution 342.65 15.07 5.16 5.16 Total: -1.00 -36.60 342.65 -6.90 -43.49 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -4.40 Total: 5.75 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -3.40 Total: 3.21 kcal Atomic # 7 Polarization: -71.62 SS G_CDS: -0.27 Total: -71.89 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: 0.28 Total: -6.98 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -4.28 Total: 21.26 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.60 -6.90 -43.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092349477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.392 kcal (2) G-P(sol) polarization free energy of solvation -36.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 193.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 186.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds