Wall clock time and date at job start Tue Mar 31 2020 06:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00248 * 2 1 4 4 H 1.48500 * 109.46965 * 269.99531 * 3 2 1 5 5 H 1.48494 * 109.47337 * 29.99946 * 3 2 1 6 6 H 1.48506 * 109.46905 * 150.00041 * 3 2 1 7 7 C 1.38814 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00485 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99695 * 0.02562 * 7 2 1 10 10 C 1.47586 * 134.49353 * 180.02562 * 9 7 2 11 11 C 1.53947 * 86.11613 * 155.35630 * 10 9 7 12 12 N 1.46502 * 113.73654 * 137.95394 * 11 10 9 13 13 C 1.35314 * 125.86955 * 277.21603 * 12 11 10 14 14 C 1.35349 * 106.17556 * 180.19209 * 13 12 11 15 15 C 1.50701 * 126.74911 * 179.85168 * 14 13 12 16 16 N 1.46504 * 109.46923 * 94.71167 * 15 14 13 17 17 C 1.34777 * 119.99858 * 180.02562 * 16 15 14 18 18 O 1.21523 * 119.99904 * 359.97438 * 17 16 15 19 19 C 1.48146 * 120.00016 * 180.27150 * 17 16 15 20 20 C 1.39447 * 120.09969 * 179.72132 * 19 17 16 21 21 N 1.32076 * 119.87341 * 180.02562 * 20 19 17 22 22 C 1.32130 * 120.07295 * 359.97438 * 21 20 19 23 23 C 1.38724 * 120.19736 * 0.02562 * 22 21 20 24 24 N 1.31802 * 120.12690 * 359.71821 * 23 22 21 25 25 N 1.33765 * 106.49529 * 359.58874 * 14 13 12 26 26 N 1.28632 * 108.88753 * 0.26301 * 25 14 13 27 27 C 1.47820 * 134.45902 * 359.86563 * 9 7 2 28 28 H 0.96998 * 119.99448 * 0.02562 * 1 2 3 29 29 H 1.08997 * 113.76878 * 41.05454 * 10 9 7 30 30 H 1.09004 * 113.86503 * 269.67098 * 10 9 7 31 31 H 1.09001 * 113.73825 * 269.14844 * 11 10 9 32 32 H 1.08006 * 126.91167 * 0.03577 * 13 12 11 33 33 H 1.08998 * 109.47477 * 334.70846 * 15 14 13 34 34 H 1.08997 * 109.47150 * 214.70741 * 15 14 13 35 35 H 0.97001 * 120.00416 * 359.97438 * 16 15 14 36 36 H 1.07998 * 120.05725 * 359.97438 * 20 19 17 37 37 H 1.08010 * 119.90340 * 180.02562 * 22 21 20 38 38 H 1.08004 * 119.94112 * 180.02562 * 23 22 21 39 39 H 1.08998 * 113.76824 * 90.37905 * 27 9 7 40 40 H 1.09001 * 113.83359 * 318.91558 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 1.7199 -3.8102 0.0015 11 6 0.3463 -4.0826 0.6410 12 7 -0.3336 -5.2612 0.0981 13 6 -1.0705 -5.2992 -1.0362 14 6 -1.5121 -6.5729 -1.1565 15 6 -2.3793 -7.1264 -2.2578 16 7 -1.5323 -7.7295 -3.2898 17 6 -2.0936 -8.2912 -4.3788 18 8 -3.3023 -8.2978 -4.5043 19 6 -1.2374 -8.9065 -5.4195 20 6 -1.8162 -9.4934 -6.5442 21 7 -1.0487 -10.0411 -7.4691 22 6 0.2652 -10.0326 -7.3293 23 6 0.8442 -9.4495 -6.2116 24 7 0.0859 -8.8963 -5.2863 25 7 -1.0226 -7.2452 -0.1088 26 7 -0.3288 -6.4398 0.6155 27 6 -0.1059 -2.7570 0.0025 28 1 -0.4849 0.8401 -0.0004 29 1 2.5617 -4.0322 0.6574 30 1 1.8331 -4.2372 -0.9951 31 1 0.3581 -4.0631 1.7308 32 1 -1.2688 -4.4776 -1.7087 33 1 -2.9682 -6.3207 -2.6962 34 1 -3.0477 -7.8836 -1.8481 35 1 -0.5674 -7.7239 -3.1898 36 1 -2.8901 -9.5008 -6.6583 37 1 0.8903 -10.4809 -8.0875 38 1 1.9186 -9.4445 -6.1018 39 1 -0.5313 -2.8721 -0.9944 40 1 -0.7190 -2.1399 0.6594 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094271126.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:02 Heat of formation + Delta-G solvation = 180.009190 kcal Electronic energy + Delta-G solvation = -26233.137844 eV Core-core repulsion = 22281.009832 eV Total energy + Delta-G solvation = -3952.128012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.10559 -41.62885 -39.50892 -38.38755 -35.48710 -34.78290 -33.43033 -32.27831 -31.95378 -31.18185 -28.01554 -27.32159 -25.53203 -25.25280 -24.75773 -24.38507 -21.97540 -21.41197 -21.04917 -19.66016 -18.69189 -18.05395 -17.41390 -17.19073 -16.72366 -16.29264 -15.89322 -15.70657 -15.35094 -15.13522 -14.90097 -14.59248 -14.23902 -14.10478 -13.49448 -13.25745 -13.13251 -12.94360 -12.26578 -12.16361 -12.13103 -11.87211 -11.75562 -11.41922 -11.20769 -11.00265 -10.97981 -10.72822 -10.54831 -10.26025 -9.93161 -9.91702 -9.64366 -9.56974 -9.29246 -9.14358 -9.07771 -7.28535 -6.07181 -3.42581 -0.05086 0.57682 1.77428 2.33060 2.39264 2.61296 3.04156 3.24593 3.29982 3.31811 3.36978 3.58766 3.73216 3.98651 4.19601 4.30655 4.41182 4.67858 4.68332 4.71606 4.76080 4.89180 5.05569 5.10637 5.18064 5.37743 5.44243 5.55807 5.69981 5.78915 6.02459 6.08467 6.09954 6.12359 6.26652 6.50921 6.63022 6.76998 7.00054 7.08132 7.13786 7.30923 7.65181 7.83972 8.70560 8.73092 9.39346 10.16668 11.10090 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.014660 B = 0.002358 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.531495 B =11873.533710 C =12730.071468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.001 4.001 3 Si 0.920 3.080 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.232 4.232 8 H 0.087 0.913 9 N -0.599 5.599 10 C 0.120 3.880 11 C 0.077 3.923 12 N -0.264 5.264 13 C -0.012 4.012 14 C -0.065 4.065 15 C 0.214 3.786 16 N -0.699 5.699 17 C 0.576 3.424 18 O -0.528 6.528 19 C 0.032 3.968 20 C 0.110 3.890 21 N -0.440 5.440 22 C 0.072 3.928 23 C 0.052 3.948 24 N -0.411 5.411 25 N -0.266 5.266 26 N -0.087 5.087 27 C 0.164 3.836 28 H 0.259 0.741 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.132 0.868 32 H 0.191 0.809 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.414 0.586 36 H 0.184 0.816 37 H 0.177 0.823 38 H 0.179 0.821 39 H 0.041 0.959 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.753 -16.713 -10.840 19.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.199 4.199 3 Si 0.749 3.251 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.359 4.359 8 H 0.105 0.895 9 N -0.325 5.325 10 C -0.008 4.008 11 C -0.025 4.025 12 N -0.057 5.057 13 C -0.166 4.166 14 C -0.204 4.204 15 C 0.089 3.911 16 N -0.351 5.351 17 C 0.359 3.641 18 O -0.405 6.405 19 C -0.109 4.109 20 C -0.050 4.050 21 N -0.155 5.155 22 C -0.089 4.089 23 C -0.111 4.111 24 N -0.129 5.129 25 N -0.132 5.132 26 N -0.067 5.067 27 C 0.037 3.963 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.150 0.850 32 H 0.208 0.792 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.250 0.750 36 H 0.201 0.799 37 H 0.194 0.806 38 H 0.196 0.804 39 H 0.059 0.941 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.108 -17.157 -9.655 19.718 hybrid contribution 0.796 1.733 -0.876 2.099 sum -0.311 -15.424 -10.531 18.678 Atomic orbital electron populations 1.69759 1.05172 1.26176 1.55378 1.24856 0.95796 0.97942 1.01278 0.86012 0.78680 0.82615 0.77805 1.21280 1.21340 1.20325 1.19001 0.90426 0.80965 1.45527 0.89489 1.45676 1.01603 0.99356 1.85891 1.22936 0.93422 0.86615 0.97777 1.25291 0.95470 0.80565 1.01157 1.47917 1.31962 1.09867 1.15943 1.23508 0.99378 1.00449 0.93290 1.21652 1.07215 0.91892 0.99612 1.19380 0.90106 0.98142 0.83475 1.45903 1.11849 1.57336 1.19990 1.17576 0.86788 0.78513 0.81200 1.90824 1.13188 1.58650 1.77797 1.22210 0.91359 1.00406 0.96968 1.23870 1.02315 0.90520 0.88284 1.68642 1.05745 1.13692 1.27374 1.24143 0.92186 0.95011 0.97600 1.23899 1.01869 0.94592 0.90704 1.68372 1.04556 1.12044 1.27895 1.75017 1.09234 1.25419 1.03559 1.78274 1.18468 0.88646 1.21280 1.22744 0.89412 0.86219 0.97938 0.93081 0.91953 0.93934 0.85000 0.79172 0.89125 0.89264 0.75010 0.79884 0.80602 0.80421 0.94099 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.94 11.39 55.49 0.63 -24.31 16 2 C 0.00 -0.03 5.50 -17.43 -0.10 -0.13 16 3 Si 0.92 20.58 29.55 -169.99 -5.02 15.55 16 4 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 7 C -0.23 -5.94 10.70 -15.06 -0.16 -6.10 16 8 H 0.09 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.60 -13.69 3.70 -177.87 -0.66 -14.35 16 10 C 0.12 2.19 8.74 -2.96 -0.03 2.17 16 11 C 0.08 1.31 5.13 -70.15 -0.36 0.95 16 12 N -0.26 -4.26 3.54 -56.30 -0.20 -4.46 16 13 C -0.01 -0.18 10.72 -17.05 -0.18 -0.36 16 14 C -0.06 -0.90 6.62 -82.78 -0.55 -1.45 16 15 C 0.21 2.49 6.23 -5.19 -0.03 2.46 16 16 N -0.70 -8.01 5.54 -62.33 -0.35 -8.35 16 17 C 0.58 6.87 7.81 -12.19 -0.10 6.78 16 18 O -0.53 -7.38 16.35 5.35 0.09 -7.30 16 19 C 0.03 0.33 6.75 -82.84 -0.56 -0.23 16 20 C 0.11 1.04 10.77 -17.00 -0.18 0.86 16 21 N -0.44 -3.91 10.49 -12.71 -0.13 -4.04 16 22 C 0.07 0.44 11.23 -17.24 -0.19 0.25 16 23 C 0.05 0.34 11.22 -17.38 -0.20 0.15 16 24 N -0.41 -3.97 9.71 -9.61 -0.09 -4.07 16 25 N -0.27 -4.38 12.41 33.29 0.41 -3.97 16 26 N -0.09 -1.51 13.16 60.35 0.79 -0.72 16 27 C 0.16 3.31 6.90 -2.85 -0.02 3.29 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 32 H 0.19 2.40 6.74 -52.48 -0.35 2.04 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.41 4.69 7.82 -40.82 -0.32 4.37 16 36 H 0.18 1.54 7.65 -52.49 -0.40 1.13 16 37 H 0.18 0.44 8.06 -52.48 -0.42 0.01 16 38 H 0.18 0.58 8.06 -52.48 -0.42 0.16 16 39 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16 40 H 0.09 2.07 7.16 -51.93 -0.37 1.70 16 LS Contribution 354.15 15.07 5.34 5.34 Total: -1.00 -31.64 354.15 -6.12 -37.76 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.28 Total: 4.27 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: -2.65 Total: 8.64 kcal Atomic # 7 Polarization: -64.67 SS G_CDS: 0.41 Total: -64.27 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: 0.09 Total: -7.30 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.64 -6.12 -37.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094271126.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.769 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds