Wall clock time and date at job start Tue Mar 31 2020 06:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 120.00188 * 2 1 4 4 H 1.48497 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46783 * 299.99811 * 3 2 1 6 6 H 1.48496 * 109.46765 * 59.99537 * 3 2 1 7 7 C 1.38810 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99900 * 0.02562 * 7 2 1 10 10 C 1.47587 * 134.49160 * 180.02562 * 9 7 2 11 11 C 1.53943 * 86.11372 * 155.35584 * 10 9 7 12 12 N 1.46497 * 113.73765 * 137.95286 * 11 10 9 13 13 C 1.35317 * 125.87017 * 276.92228 * 12 11 10 14 14 C 1.35348 * 106.17735 * 180.21003 * 13 12 11 15 15 C 1.50695 * 126.75026 * 179.78015 * 14 13 12 16 16 N 1.46501 * 109.47705 * 94.99599 * 15 14 13 17 17 C 1.34773 * 120.00017 * 179.97438 * 16 15 14 18 18 O 1.21513 * 120.00528 * 0.02562 * 17 16 15 19 19 C 1.48133 * 119.99524 * 179.97438 * 17 16 15 20 20 C 1.40114 * 121.14539 * 179.72274 * 19 17 16 21 21 C 1.38501 * 117.82576 * 179.74219 * 20 19 17 22 22 N 1.31915 * 119.96724 * 0.54328 * 21 20 19 23 23 N 1.28277 * 122.51968 * 359.71510 * 22 21 20 24 24 C 1.31926 * 122.32356 * 0.02562 * 23 22 21 25 25 N 1.33774 * 106.49647 * 359.63857 * 14 13 12 26 26 N 1.28636 * 108.88665 * 0.37294 * 25 14 13 27 27 C 1.47811 * 134.45712 * 359.86196 * 9 7 2 28 28 H 0.97005 * 119.99940 * 0.02562 * 1 2 3 29 29 H 1.09000 * 113.76860 * 41.05573 * 10 9 7 30 30 H 1.09000 * 113.86642 * 269.67306 * 10 9 7 31 31 H 1.09004 * 113.74249 * 269.15104 * 11 10 9 32 32 H 1.08002 * 126.90702 * 359.93974 * 13 12 11 33 33 H 1.09004 * 109.46902 * 214.99581 * 15 14 13 34 34 H 1.09001 * 109.47591 * 334.99010 * 15 14 13 35 35 H 0.96996 * 119.99307 * 359.97438 * 16 15 14 36 36 H 1.08003 * 121.08897 * 359.97438 * 20 19 17 37 37 H 1.08001 * 120.01789 * 180.23410 * 21 20 19 38 38 H 1.07998 * 120.17720 * 179.97438 * 24 23 22 39 39 H 1.09001 * 113.76395 * 90.38187 * 27 9 7 40 40 H 1.08996 * 113.83516 * 318.92330 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 1.7201 -3.8102 0.0015 11 6 0.3466 -4.0826 0.6410 12 7 -0.3333 -5.2612 0.0981 13 6 -1.0749 -5.2979 -1.0332 14 6 -1.5148 -6.5721 -1.1545 15 6 -2.3868 -7.1242 -2.2526 16 7 -1.5447 -7.7293 -3.2875 17 6 -2.1110 -8.2911 -4.3738 18 8 -3.3200 -8.2955 -4.4951 19 6 -1.2593 -8.9023 -5.4204 20 6 -1.8227 -9.4980 -6.5566 21 6 -0.9621 -10.0439 -7.4944 22 7 0.3414 -10.0014 -7.2961 23 7 0.8634 -9.4623 -6.2557 24 6 0.1332 -8.9102 -5.3057 25 7 -1.0207 -7.2457 -0.1097 26 7 -0.3277 -6.4401 0.6151 27 6 -0.1058 -2.7571 0.0026 28 1 -0.4850 0.8401 -0.0004 29 1 2.5619 -4.0321 0.6574 30 1 1.8333 -4.2371 -0.9950 31 1 0.3582 -4.0631 1.7308 32 1 -1.2787 -4.4748 -1.7021 33 1 -3.0552 -7.8802 -1.8403 34 1 -2.9759 -6.3177 -2.6891 35 1 -0.5796 -7.7254 -3.1908 36 1 -2.8930 -9.5273 -6.6983 37 1 -1.3581 -10.5085 -8.3854 38 1 0.6093 -8.4663 -4.4439 39 1 -0.5311 -2.8722 -0.9944 40 1 -0.7188 -2.1399 0.6594 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094322903.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:51 Heat of formation + Delta-G solvation = 190.382969 kcal Electronic energy + Delta-G solvation = -26232.988693 eV Core-core repulsion = 22281.310522 eV Total energy + Delta-G solvation = -3951.678171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.19302 -41.61146 -39.74910 -38.44178 -35.62035 -33.82807 -33.49971 -33.06831 -32.03520 -31.31512 -28.07151 -27.50709 -25.54487 -25.25740 -24.85624 -24.44489 -22.04360 -21.47498 -21.23495 -19.72306 -18.85951 -18.12625 -17.44169 -16.93517 -16.72447 -16.39441 -15.90555 -15.76724 -15.53984 -15.17459 -15.10645 -14.72047 -14.14582 -14.07834 -13.92341 -13.55598 -13.25680 -13.00517 -12.33259 -12.18786 -11.93007 -11.51122 -11.44592 -11.24265 -11.08388 -11.02180 -10.91462 -10.70744 -10.61955 -10.61127 -10.26067 -10.11980 -9.95292 -9.65862 -9.50184 -9.24354 -9.12515 -7.31893 -6.10285 -3.45751 -0.14420 0.37992 1.68044 2.20608 2.33578 2.53578 2.94248 3.18306 3.22543 3.28753 3.30915 3.58146 3.81947 4.03491 4.12323 4.15687 4.22436 4.36178 4.61135 4.67513 4.77413 4.81729 5.01637 5.11485 5.14463 5.29162 5.32510 5.36384 5.48884 5.59248 5.61899 5.90075 5.96710 6.03033 6.04165 6.19863 6.44764 6.72874 6.93357 6.97873 7.10466 7.62462 7.63906 8.16154 8.62036 8.70088 9.36452 10.13015 11.07004 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.014507 B = 0.002357 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.698853 B =11877.982221 C =12744.677548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.001 4.001 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.232 4.232 8 H 0.088 0.912 9 N -0.598 5.598 10 C 0.120 3.880 11 C 0.076 3.924 12 N -0.264 5.264 13 C -0.012 4.012 14 C -0.069 4.069 15 C 0.216 3.784 16 N -0.711 5.711 17 C 0.564 3.436 18 O -0.524 6.524 19 C -0.130 4.130 20 C -0.057 4.057 21 C 0.038 3.962 22 N -0.228 5.228 23 N -0.240 5.240 24 C 0.072 3.928 25 N -0.266 5.266 26 N -0.086 5.086 27 C 0.163 3.837 28 H 0.259 0.741 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.133 0.867 32 H 0.192 0.808 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.404 0.596 36 H 0.165 0.835 37 H 0.182 0.818 38 H 0.175 0.825 39 H 0.041 0.959 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.788 -15.715 -9.484 18.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.199 4.199 3 Si 0.749 3.251 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.359 4.359 8 H 0.106 0.894 9 N -0.325 5.325 10 C -0.007 4.007 11 C -0.026 4.026 12 N -0.056 5.056 13 C -0.166 4.166 14 C -0.207 4.207 15 C 0.092 3.908 16 N -0.363 5.363 17 C 0.349 3.651 18 O -0.400 6.400 19 C -0.145 4.145 20 C -0.087 4.087 21 C -0.126 4.126 22 N -0.070 5.070 23 N -0.081 5.081 24 C -0.093 4.093 25 N -0.132 5.132 26 N -0.065 5.065 27 C 0.037 3.963 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.150 0.850 32 H 0.209 0.791 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.240 0.760 36 H 0.183 0.817 37 H 0.199 0.801 38 H 0.192 0.808 39 H 0.059 0.941 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.560 -16.557 -8.878 19.121 hybrid contribution -0.863 2.152 -0.244 2.331 sum -4.424 -14.405 -9.122 17.615 Atomic orbital electron populations 1.69765 1.05182 1.26098 1.55436 1.24857 0.95800 0.97969 1.01231 0.85942 0.78816 0.82848 0.77511 1.20178 1.21402 1.21345 1.19053 0.90470 0.80919 1.45456 0.89399 1.45680 1.01581 0.99374 1.85857 1.22934 0.93390 0.86634 0.97767 1.25334 0.95498 0.80500 1.01218 1.47958 1.31763 1.09896 1.15982 1.23531 0.99170 1.00422 0.93448 1.21650 1.07331 0.91932 0.99837 1.19363 0.90030 0.98157 0.83287 1.45956 1.11201 1.58409 1.20738 1.17827 0.87403 0.78536 0.81353 1.90817 1.13604 1.57872 1.77751 1.21238 0.95152 1.00889 0.97207 1.22666 1.03376 0.91360 0.91288 1.24446 0.91041 0.97051 1.00088 1.72929 1.12221 1.09135 1.12714 1.73125 1.31882 1.05493 0.97584 1.24602 0.90859 0.94746 0.99113 1.75033 1.09254 1.25468 1.03492 1.78298 1.18471 0.88649 1.21095 1.22746 0.89461 0.86198 0.97922 0.93117 0.91904 0.93945 0.84962 0.79117 0.89177 0.89031 0.76029 0.81743 0.80137 0.80777 0.94113 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.62 11.39 55.49 0.63 -23.99 16 2 C 0.00 -0.03 5.50 -17.43 -0.10 -0.12 16 3 Si 0.92 20.39 29.55 -169.99 -5.02 15.37 16 4 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.23 -5.85 10.70 -15.06 -0.16 -6.01 16 8 H 0.09 2.15 7.83 -52.48 -0.41 1.74 16 9 N -0.60 -13.39 3.70 -177.90 -0.66 -14.05 16 10 C 0.12 2.12 8.74 -2.96 -0.03 2.10 16 11 C 0.08 1.25 5.14 -70.16 -0.36 0.89 16 12 N -0.26 -4.00 3.54 -56.32 -0.20 -4.20 16 13 C -0.01 -0.15 10.72 -17.05 -0.18 -0.34 16 14 C -0.07 -0.86 6.61 -82.78 -0.55 -1.41 16 15 C 0.22 2.18 6.23 -5.20 -0.03 2.15 16 16 N -0.71 -6.45 5.51 -62.34 -0.34 -6.79 16 17 C 0.56 5.61 7.80 -12.20 -0.10 5.51 16 18 O -0.52 -6.67 16.49 5.35 0.09 -6.58 16 19 C -0.13 -1.11 5.92 -104.57 -0.62 -1.73 16 20 C -0.06 -0.40 9.77 -38.78 -0.38 -0.78 16 21 C 0.04 0.26 11.30 -17.42 -0.20 0.06 16 22 N -0.23 -2.32 11.48 30.53 0.35 -1.97 16 23 N -0.24 -2.59 11.49 30.78 0.35 -2.24 16 24 C 0.07 0.61 10.84 -16.95 -0.18 0.43 16 25 N -0.27 -4.06 12.41 33.29 0.41 -3.65 16 26 N -0.09 -1.40 13.17 60.35 0.79 -0.61 16 27 C 0.16 3.21 6.90 -2.85 -0.02 3.19 16 28 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.13 2.10 8.14 -51.93 -0.42 1.68 16 32 H 0.19 2.19 6.73 -52.49 -0.35 1.83 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.40 3.12 6.62 -40.82 -0.27 2.85 16 36 H 0.17 0.90 7.80 -52.48 -0.41 0.50 16 37 H 0.18 0.56 8.06 -52.49 -0.42 0.14 16 38 H 0.18 1.06 6.53 -52.49 -0.34 0.72 16 39 H 0.04 0.78 6.31 -51.93 -0.33 0.45 16 40 H 0.09 2.03 7.16 -51.93 -0.37 1.66 16 LS Contribution 352.30 15.07 5.31 5.31 Total: -1.00 -31.91 352.30 -5.34 -37.25 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -4.16 Total: 2.21 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -2.90 Total: 3.94 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: 1.34 Total: -57.50 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: 0.09 Total: -6.58 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.91 -5.34 -37.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094322903.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.636 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 195.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 190.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds