Wall clock time and date at job start Tue Mar 31 2020 06:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 119.99616 * 2 1 4 4 H 1.48501 * 109.47012 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47403 * 299.99996 * 3 2 1 6 6 H 1.48499 * 109.47359 * 60.00267 * 3 2 1 7 7 C 1.38809 * 120.00444 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00433 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99683 * 359.97438 * 7 2 1 10 10 C 1.47066 * 136.05534 * 180.02562 * 9 7 2 11 11 C 1.53504 * 88.04678 * 207.12355 * 10 9 7 12 12 N 1.46499 * 114.20382 * 220.37387 * 11 10 9 13 13 C 1.35316 * 125.86841 * 84.71602 * 12 11 10 14 14 C 1.35353 * 106.17181 * 179.90219 * 13 12 11 15 15 C 1.50700 * 126.74884 * 180.12613 * 14 13 12 16 16 N 1.46504 * 109.47174 * 95.24274 * 15 14 13 17 17 C 1.34774 * 120.00157 * 179.97438 * 16 15 14 18 18 O 1.21480 * 119.99674 * 0.02562 * 17 16 15 19 19 C 1.48457 * 120.00025 * 180.02562 * 17 16 15 20 20 C 1.39543 * 120.54724 * 180.02562 * 19 17 16 21 21 C 1.38755 * 118.25946 * 180.02562 * 20 19 17 22 22 N 1.32207 * 119.14995 * 359.97438 * 21 20 19 23 23 C 1.31880 * 121.03755 * 359.97438 * 22 21 20 24 24 N 1.31588 * 121.91637 * 359.71887 * 23 22 21 25 25 N 1.33768 * 106.49641 * 0.35251 * 14 13 12 26 26 N 1.28630 * 108.88712 * 359.77204 * 25 14 13 27 27 C 1.47064 * 136.05806 * 0.04980 * 9 7 2 28 28 H 0.96996 * 120.00248 * 359.97438 * 1 2 3 29 29 H 1.09002 * 113.46793 * 321.93327 * 10 9 7 30 30 H 1.08999 * 113.46805 * 92.31694 * 10 9 7 31 31 H 1.09002 * 114.20460 * 87.54848 * 11 10 9 32 32 H 1.07997 * 126.91482 * 0.02562 * 13 12 11 33 33 H 1.08996 * 109.47190 * 215.24593 * 15 14 13 34 34 H 1.08998 * 109.47264 * 335.24837 * 15 14 13 35 35 H 0.97003 * 119.99825 * 0.02562 * 16 15 14 36 36 H 1.07998 * 120.86672 * 0.02562 * 20 19 17 37 37 H 1.07999 * 120.42687 * 180.02562 * 21 20 19 38 38 H 1.07997 * 119.04185 * 179.97438 * 23 22 21 39 39 H 1.08999 * 113.47096 * 267.62616 * 27 9 7 40 40 H 1.09005 * 113.46966 * 38.01009 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3966 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 1.6802 -3.8153 -0.0005 11 6 0.3424 -4.0936 -0.7000 12 7 -0.3488 -5.2925 -0.2191 13 6 -1.1655 -5.3585 0.8579 14 6 -1.5843 -6.6433 0.9351 15 6 -2.5158 -7.2275 1.9656 16 7 -3.8845 -7.2271 1.4430 17 6 -4.8936 -7.7074 2.1961 18 8 -4.6684 -8.1403 3.3086 19 6 -6.2804 -7.7075 1.6662 20 6 -7.3339 -8.2016 2.4364 21 6 -8.6109 -8.1794 1.8942 22 7 -8.7852 -7.6945 0.6766 23 6 -7.7672 -7.2343 -0.0242 24 7 -6.5404 -7.2300 0.4516 25 7 -1.0049 -7.2934 -0.0803 26 7 -0.2794 -6.4651 -0.7452 27 6 -0.0875 -2.7949 -0.0010 28 1 -0.4850 0.8400 0.0004 29 1 2.5487 -4.0469 -0.6170 30 1 1.7455 -4.2464 0.9985 31 1 0.3834 -4.0240 -1.7870 32 1 -1.4312 -4.5486 1.5210 33 1 -2.2132 -8.2501 2.1908 34 1 -2.4740 -6.6277 2.8748 35 1 -4.0642 -6.8818 0.5545 36 1 -7.1598 -8.5911 3.4286 37 1 -9.4519 -8.5526 2.4598 38 1 -7.9463 -6.8459 -1.0158 39 1 -0.4936 -2.9545 0.9979 40 1 -0.7224 -2.1580 -0.6171 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094327667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:26 Heat of formation + Delta-G solvation = 184.601716 kcal Electronic energy + Delta-G solvation = -26128.533101 eV Core-core repulsion = 22176.604236 eV Total energy + Delta-G solvation = -3951.928865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.12832 -41.56550 -39.57913 -38.58787 -35.48649 -34.31953 -33.44675 -32.52053 -32.06082 -31.29253 -28.08130 -27.47206 -25.43691 -25.04084 -24.70450 -24.47007 -22.02492 -21.48670 -21.09132 -19.75352 -18.91922 -18.05562 -17.41630 -16.83887 -16.26081 -15.93043 -15.88577 -15.83966 -15.69391 -15.14502 -14.96175 -14.62771 -14.22405 -14.11142 -13.99810 -13.42106 -13.13449 -13.03716 -12.39321 -12.14867 -11.88088 -11.43790 -11.41159 -11.26435 -11.25007 -11.02227 -10.92812 -10.82431 -10.50213 -10.27414 -10.20632 -9.90713 -9.78185 -9.52112 -9.34337 -9.18059 -9.09781 -7.29846 -6.08498 -3.44187 0.07605 0.47500 1.75356 2.29478 2.42335 2.58185 2.98947 3.23812 3.29789 3.32092 3.42751 3.55234 3.68950 4.18469 4.18955 4.28673 4.43351 4.57839 4.61920 4.79925 4.86660 5.07540 5.08184 5.16048 5.17736 5.37908 5.42269 5.52946 5.67442 5.80139 6.03649 6.04639 6.08342 6.09766 6.23818 6.35424 6.48730 6.73208 6.98310 7.11600 7.15860 7.51594 7.63840 7.79542 8.68828 8.71388 9.37680 10.19247 11.09036 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.016191 B = 0.002245 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.947674 B =12467.276273 C =13386.667125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.002 4.002 3 Si 0.921 3.079 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.227 4.227 8 H 0.090 0.910 9 N -0.595 5.595 10 C 0.117 3.883 11 C 0.071 3.929 12 N -0.261 5.261 13 C -0.012 4.012 14 C -0.065 4.065 15 C 0.213 3.787 16 N -0.697 5.697 17 C 0.570 3.430 18 O -0.526 6.526 19 C 0.134 3.866 20 C -0.170 4.170 21 C 0.150 3.850 22 N -0.508 5.508 23 C 0.296 3.704 24 N -0.495 5.495 25 N -0.265 5.265 26 N -0.086 5.086 27 C 0.156 3.844 28 H 0.259 0.741 29 H 0.059 0.941 30 H 0.043 0.957 31 H 0.137 0.863 32 H 0.192 0.808 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.415 0.585 36 H 0.162 0.838 37 H 0.177 0.823 38 H 0.204 0.796 39 H 0.039 0.961 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.098 -14.042 3.100 20.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.199 4.199 3 Si 0.750 3.250 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.353 4.353 8 H 0.108 0.892 9 N -0.321 5.321 10 C -0.010 4.010 11 C -0.031 4.031 12 N -0.054 5.054 13 C -0.166 4.166 14 C -0.204 4.204 15 C 0.089 3.911 16 N -0.348 5.348 17 C 0.353 3.647 18 O -0.401 6.401 19 C -0.014 4.014 20 C -0.192 4.192 21 C -0.018 4.018 22 N -0.222 5.222 23 C 0.008 3.992 24 N -0.211 5.211 25 N -0.132 5.132 26 N -0.065 5.065 27 C 0.029 3.971 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.154 0.846 32 H 0.209 0.791 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.252 0.748 36 H 0.180 0.820 37 H 0.194 0.806 38 H 0.220 0.780 39 H 0.057 0.943 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.307 -14.409 1.828 19.699 hybrid contribution 0.070 1.565 1.227 1.990 sum -13.237 -12.845 3.055 18.696 Atomic orbital electron populations 1.69783 1.05176 1.26087 1.55254 1.24878 0.95830 0.97971 1.01241 0.85918 0.78791 0.82759 0.77503 1.20157 1.21333 1.21394 1.18985 0.90340 0.80375 1.45628 0.89241 1.45233 1.01910 0.99302 1.85641 1.22754 0.93822 0.86959 0.97486 1.25008 0.96196 0.80224 1.01697 1.47759 1.29774 1.09672 1.18158 1.23513 0.98241 0.99966 0.94895 1.21633 1.06004 0.91832 1.00940 1.19384 0.77163 1.01996 0.92557 1.45910 1.06787 1.61758 1.20380 1.17744 0.83404 0.78669 0.84863 1.90815 1.83563 1.46659 1.19068 1.21648 0.95110 0.93985 0.90637 1.23011 0.93640 0.99566 1.03018 1.23391 0.96419 0.91111 0.90847 1.68388 1.36160 1.10002 1.07642 1.25050 0.82628 0.91741 0.99773 1.68382 1.24924 1.15025 1.12801 1.75024 1.07873 1.25117 1.05154 1.78283 1.19036 0.88258 1.20908 1.22518 0.90264 0.87066 0.97285 0.93138 0.92274 0.93964 0.84585 0.79138 0.89247 0.89115 0.74820 0.82031 0.80564 0.77966 0.94314 0.89175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.90 11.51 55.49 0.64 -24.26 16 2 C 0.00 -0.04 5.50 -17.43 -0.10 -0.14 16 3 Si 0.92 20.56 29.55 -169.99 -5.02 15.54 16 4 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.23 -5.81 10.75 -15.06 -0.16 -5.98 16 8 H 0.09 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.60 -13.70 3.78 -184.56 -0.70 -14.40 16 10 C 0.12 2.18 8.49 -8.50 -0.07 2.11 16 11 C 0.07 1.21 5.34 -67.69 -0.36 0.85 16 12 N -0.26 -4.19 3.56 -54.46 -0.19 -4.38 16 13 C -0.01 -0.17 10.72 -17.04 -0.18 -0.36 16 14 C -0.07 -0.90 6.62 -82.78 -0.55 -1.44 16 15 C 0.21 2.44 6.23 -5.19 -0.03 2.41 16 16 N -0.70 -7.81 5.54 -62.23 -0.34 -8.15 16 17 C 0.57 6.65 7.83 -12.05 -0.09 6.55 16 18 O -0.53 -7.20 16.43 5.38 0.09 -7.12 16 19 C 0.13 1.36 6.79 -82.63 -0.56 0.80 16 20 C -0.17 -1.33 9.72 -38.90 -0.38 -1.71 16 21 C 0.15 0.99 11.31 -17.20 -0.19 0.80 16 22 N -0.51 -4.25 10.42 -14.60 -0.15 -4.40 16 23 C 0.30 2.46 12.28 -92.26 -1.13 1.32 16 24 N -0.49 -4.90 9.70 -11.14 -0.11 -5.01 16 25 N -0.26 -4.34 12.41 33.29 0.41 -3.93 16 26 N -0.09 -1.47 13.16 60.35 0.79 -0.68 16 27 C 0.16 3.15 6.75 -8.44 -0.06 3.10 16 28 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.14 2.25 8.14 -51.93 -0.42 1.82 16 32 H 0.19 2.34 6.78 -52.49 -0.36 1.99 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.42 4.61 7.85 -40.82 -0.32 4.29 16 36 H 0.16 1.06 7.74 -52.49 -0.41 0.65 16 37 H 0.18 0.53 8.06 -52.49 -0.42 0.11 16 38 H 0.20 1.07 8.06 -52.49 -0.42 0.64 16 39 H 0.04 0.76 6.38 -51.93 -0.33 0.43 16 40 H 0.09 2.03 7.12 -51.93 -0.37 1.66 16 LS Contribution 354.53 15.07 5.34 5.34 Total: -1.00 -31.50 354.53 -7.40 -38.91 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -4.29 Total: 4.24 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: -3.87 Total: 8.31 kcal Atomic # 7 Polarization: -65.57 SS G_CDS: 0.35 Total: -65.22 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: 0.09 Total: -7.12 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.50 -7.40 -38.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094327667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.510 kcal (2) G-P(sol) polarization free energy of solvation -31.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 192.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 184.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds