Wall clock time and date at job start Tue Mar 31 2020 06:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 119.99616 * 2 1 4 4 H 1.48501 * 109.47012 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47403 * 299.99996 * 3 2 1 6 6 H 1.48499 * 109.47359 * 60.00267 * 3 2 1 7 7 C 1.38809 * 120.00444 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00433 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99683 * 359.97438 * 7 2 1 10 10 C 1.47066 * 136.05534 * 180.02562 * 9 7 2 11 11 C 1.53504 * 88.04678 * 207.12355 * 10 9 7 12 12 N 1.46499 * 114.20382 * 220.37387 * 11 10 9 13 13 C 1.35316 * 125.86841 * 84.71602 * 12 11 10 14 14 C 1.35353 * 106.17181 * 179.90219 * 13 12 11 15 15 C 1.50700 * 126.74884 * 180.12613 * 14 13 12 16 16 N 1.46504 * 109.47174 * 95.24274 * 15 14 13 17 17 C 1.34774 * 120.00157 * 179.97438 * 16 15 14 18 18 O 1.21470 * 119.99768 * 0.02562 * 17 16 15 19 19 C 1.48533 * 119.99975 * 180.02562 * 17 16 15 20 20 N 1.32452 * 119.18937 * 359.73138 * 19 17 16 21 21 C 1.32112 * 120.77321 * 179.75738 * 20 19 17 22 22 C 1.38807 * 119.16036 * 0.50848 * 21 20 19 23 23 C 1.38799 * 118.50593 * 359.75177 * 22 21 20 24 24 N 1.32114 * 119.16532 * 359.97438 * 23 22 21 25 25 N 1.33768 * 106.49641 * 0.35251 * 14 13 12 26 26 N 1.28630 * 108.88712 * 359.77204 * 25 14 13 27 27 C 1.47064 * 136.05806 * 0.04980 * 9 7 2 28 28 H 0.96996 * 120.00248 * 359.97438 * 1 2 3 29 29 H 1.09002 * 113.46793 * 321.93327 * 10 9 7 30 30 H 1.08999 * 113.46805 * 92.31694 * 10 9 7 31 31 H 1.09002 * 114.20460 * 87.54848 * 11 10 9 32 32 H 1.07997 * 126.91482 * 0.02562 * 13 12 11 33 33 H 1.08996 * 109.47190 * 215.24593 * 15 14 13 34 34 H 1.08998 * 109.47264 * 335.24837 * 15 14 13 35 35 H 0.97003 * 119.99825 * 0.02562 * 16 15 14 36 36 H 1.07995 * 120.42047 * 180.25542 * 21 20 19 37 37 H 1.07994 * 120.74687 * 179.76858 * 22 21 20 38 38 H 1.07999 * 120.41860 * 180.02562 * 23 22 21 39 39 H 1.08999 * 113.47096 * 267.62616 * 27 9 7 40 40 H 1.09005 * 113.46966 * 38.01009 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3966 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 1.6802 -3.8153 -0.0005 11 6 0.3424 -4.0936 -0.7000 12 7 -0.3488 -5.2925 -0.2191 13 6 -1.1655 -5.3585 0.8579 14 6 -1.5843 -6.6433 0.9351 15 6 -2.5158 -7.2275 1.9656 16 7 -3.8845 -7.2271 1.4430 17 6 -4.8936 -7.7074 2.1961 18 8 -4.6684 -8.1403 3.3085 19 6 -6.2811 -7.7075 1.6659 20 7 -6.5092 -7.2268 0.4530 21 6 -7.7302 -7.2160 -0.0513 22 6 -8.7812 -7.7069 0.7111 23 6 -8.5063 -8.1980 1.9799 24 7 -7.2606 -8.1837 2.4199 25 7 -1.0049 -7.2934 -0.0803 26 7 -0.2794 -6.4651 -0.7452 27 6 -0.0875 -2.7949 -0.0010 28 1 -0.4850 0.8400 0.0004 29 1 2.5487 -4.0469 -0.6170 30 1 1.7455 -4.2464 0.9985 31 1 0.3834 -4.0240 -1.7870 32 1 -1.4312 -4.5486 1.5210 33 1 -2.2132 -8.2501 2.1908 34 1 -2.4740 -6.6277 2.8748 35 1 -4.0642 -6.8818 0.5545 36 1 -7.9090 -6.8264 -1.0425 37 1 -9.7900 -7.7069 0.3257 38 1 -9.3005 -8.5877 2.5993 39 1 -0.4936 -2.9545 0.9979 40 1 -0.7224 -2.1580 -0.6171 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094329310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:30 Heat of formation + Delta-G solvation = 189.818775 kcal Electronic energy + Delta-G solvation = -26148.947349 eV Core-core repulsion = 22197.244713 eV Total energy + Delta-G solvation = -3951.702637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.09448 -41.57214 -39.38371 -38.56286 -35.42876 -34.21310 -33.43935 -32.75606 -32.01488 -31.18909 -28.05782 -27.38854 -25.34151 -25.04371 -24.81563 -24.44924 -21.99609 -21.45497 -21.03009 -19.72828 -18.85507 -18.02362 -17.38601 -16.82373 -16.47549 -16.14505 -15.95623 -15.65154 -15.38965 -15.12581 -14.88938 -14.50167 -14.13563 -14.04538 -13.98511 -13.33677 -13.03294 -13.00092 -12.35851 -12.12144 -11.85637 -11.69862 -11.39818 -11.36798 -11.23721 -11.01121 -10.89010 -10.54969 -10.34620 -10.26078 -10.20231 -9.88245 -9.75872 -9.49573 -9.25003 -9.15616 -9.07663 -7.28332 -6.07239 -3.42821 0.04178 0.60691 1.77967 2.27547 2.38769 2.61073 2.91092 3.24649 3.30656 3.32896 3.49699 3.54675 4.01120 4.08019 4.20690 4.32424 4.45475 4.55228 4.64690 4.78813 4.82818 4.91238 5.12423 5.19049 5.23014 5.40017 5.46815 5.56188 5.71872 5.76722 6.06149 6.10727 6.12500 6.15152 6.27012 6.43178 6.51197 6.74895 7.00964 7.13114 7.15386 7.54226 7.65109 7.93224 8.71829 8.73023 9.38961 10.20772 11.10310 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.016316 B = 0.002255 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.692333 B =12415.872684 C =13326.482948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.002 4.002 3 Si 0.921 3.079 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.226 4.226 8 H 0.090 0.910 9 N -0.595 5.595 10 C 0.117 3.883 11 C 0.071 3.929 12 N -0.262 5.262 13 C -0.012 4.012 14 C -0.064 4.064 15 C 0.216 3.784 16 N -0.699 5.699 17 C 0.585 3.415 18 O -0.505 6.505 19 C 0.287 3.713 20 N -0.493 5.493 21 C 0.148 3.852 22 C -0.210 4.210 23 C 0.145 3.855 24 N -0.469 5.469 25 N -0.265 5.265 26 N -0.086 5.086 27 C 0.156 3.844 28 H 0.258 0.742 29 H 0.059 0.941 30 H 0.043 0.957 31 H 0.136 0.864 32 H 0.192 0.808 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.414 0.586 36 H 0.177 0.823 37 H 0.155 0.845 38 H 0.177 0.823 39 H 0.040 0.960 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.457 -13.184 0.122 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.199 4.199 3 Si 0.750 3.250 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.353 4.353 8 H 0.108 0.892 9 N -0.321 5.321 10 C -0.010 4.010 11 C -0.031 4.031 12 N -0.054 5.054 13 C -0.166 4.166 14 C -0.203 4.203 15 C 0.091 3.909 16 N -0.353 5.353 17 C 0.365 3.635 18 O -0.377 6.377 19 C 0.017 3.983 20 N -0.210 5.210 21 C -0.019 4.019 22 C -0.232 4.232 23 C -0.021 4.021 24 N -0.184 5.184 25 N -0.131 5.131 26 N -0.066 5.066 27 C 0.029 3.971 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.154 0.846 32 H 0.209 0.791 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.251 0.749 36 H 0.194 0.806 37 H 0.173 0.827 38 H 0.194 0.806 39 H 0.057 0.943 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.594 -13.932 0.157 20.177 hybrid contribution -1.118 1.886 0.015 2.193 sum -15.712 -12.046 0.172 19.799 Atomic orbital electron populations 1.69785 1.05170 1.26060 1.55297 1.24876 0.95828 0.97960 1.01274 0.85920 0.78794 0.82779 0.77488 1.20161 1.21353 1.21400 1.18985 0.90338 0.80387 1.45570 0.89250 1.45235 1.01924 0.99306 1.85649 1.22755 0.93828 0.86945 0.97502 1.24991 0.96190 0.80250 1.01665 1.47749 1.29816 1.09661 1.18193 1.23517 0.98235 0.99987 0.94883 1.21636 1.05916 0.91808 1.00893 1.19368 0.76971 1.02036 0.92521 1.45829 1.06574 1.62490 1.20383 1.17173 0.82252 0.79173 0.84861 1.90824 1.83004 1.45162 1.18734 1.22886 0.95247 0.93041 0.87171 1.68335 1.24782 1.14951 1.12894 1.23353 0.87058 0.91597 0.99867 1.23219 1.02550 1.00439 0.96987 1.23418 0.93494 0.91818 0.93384 1.68260 1.00448 1.13803 1.35839 1.75024 1.07863 1.25097 1.05164 1.78279 1.19073 0.88256 1.20942 1.22518 0.90245 0.87070 0.97305 0.93156 0.92289 0.93941 0.84612 0.79120 0.89236 0.89100 0.74913 0.80568 0.82737 0.80609 0.94284 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.97 11.51 55.49 0.64 -24.34 16 2 C 0.00 -0.05 5.50 -17.43 -0.10 -0.14 16 3 Si 0.92 20.62 29.55 -169.99 -5.02 15.60 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.23 -5.82 10.75 -15.06 -0.16 -5.98 16 8 H 0.09 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.60 -13.78 3.78 -184.56 -0.70 -14.48 16 10 C 0.12 2.19 8.49 -8.50 -0.07 2.12 16 11 C 0.07 1.22 5.34 -67.69 -0.36 0.86 16 12 N -0.26 -4.25 3.56 -54.46 -0.19 -4.44 16 13 C -0.01 -0.18 10.72 -17.04 -0.18 -0.36 16 14 C -0.06 -0.90 6.62 -82.78 -0.55 -1.45 16 15 C 0.22 2.61 6.23 -5.19 -0.03 2.58 16 16 N -0.70 -8.48 5.54 -62.21 -0.34 -8.82 16 17 C 0.58 7.97 7.85 -12.02 -0.09 7.87 16 18 O -0.51 -8.28 16.86 5.39 0.09 -8.19 16 19 C 0.29 3.49 7.59 -157.08 -1.19 2.30 16 20 N -0.49 -5.04 9.57 -11.12 -0.11 -5.15 16 21 C 0.15 0.97 11.30 -17.22 -0.19 0.78 16 22 C -0.21 -1.03 10.18 -39.16 -0.40 -1.43 16 23 C 0.15 1.01 11.30 -17.22 -0.19 0.82 16 24 N -0.47 -5.43 10.13 -11.12 -0.11 -5.54 16 25 N -0.26 -4.40 12.41 33.29 0.41 -3.99 16 26 N -0.09 -1.50 13.16 60.35 0.79 -0.70 16 27 C 0.16 3.17 6.75 -8.44 -0.06 3.11 16 28 H 0.26 6.82 8.31 -40.82 -0.34 6.49 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.14 2.25 8.14 -51.93 -0.42 1.83 16 32 H 0.19 2.40 6.78 -52.49 -0.36 2.04 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.41 4.83 7.77 -40.82 -0.32 4.51 16 36 H 0.18 0.57 8.06 -52.49 -0.42 0.15 16 37 H 0.15 0.19 8.06 -52.49 -0.42 -0.23 16 38 H 0.18 0.59 8.06 -52.49 -0.42 0.17 16 39 H 0.04 0.77 6.38 -51.93 -0.33 0.44 16 40 H 0.09 2.04 7.12 -51.93 -0.37 1.67 16 LS Contribution 355.10 15.07 5.35 5.35 Total: -1.00 -33.22 355.10 -7.08 -40.30 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -4.30 Total: 3.32 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: -3.59 Total: 11.08 kcal Atomic # 7 Polarization: -67.85 SS G_CDS: 0.39 Total: -67.46 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.09 Total: -8.19 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.22 -7.08 -40.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094329310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.118 kcal (2) G-P(sol) polarization free energy of solvation -33.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 196.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 189.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds