Wall clock time and date at job start Tue Mar 31 2020 06:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 119.99616 * 2 1 4 4 H 1.48501 * 109.47012 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47403 * 299.99996 * 3 2 1 6 6 H 1.48499 * 109.47359 * 60.00267 * 3 2 1 7 7 C 1.38809 * 120.00444 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00433 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99683 * 359.97438 * 7 2 1 10 10 C 1.47066 * 136.05534 * 180.02562 * 9 7 2 11 11 C 1.53504 * 88.04678 * 207.12355 * 10 9 7 12 12 N 1.46499 * 114.20382 * 220.37387 * 11 10 9 13 13 C 1.35316 * 125.86841 * 84.71602 * 12 11 10 14 14 C 1.35353 * 106.17181 * 179.90219 * 13 12 11 15 15 C 1.50700 * 126.74884 * 180.12613 * 14 13 12 16 16 N 1.46504 * 109.47174 * 95.24274 * 15 14 13 17 17 C 1.34774 * 120.00157 * 179.97438 * 16 15 14 18 18 O 1.21470 * 119.99768 * 0.02562 * 17 16 15 19 19 C 1.48533 * 119.99975 * 180.02562 * 17 16 15 20 20 N 1.32452 * 119.18937 * 359.73138 * 19 17 16 21 21 C 1.32112 * 120.77321 * 179.75738 * 20 19 17 22 22 C 1.38807 * 119.16036 * 0.50848 * 21 20 19 23 23 C 1.38799 * 118.50593 * 359.75177 * 22 21 20 24 24 N 1.32114 * 119.16532 * 359.97438 * 23 22 21 25 25 N 1.33768 * 106.49641 * 0.35251 * 14 13 12 26 26 N 1.28630 * 108.88712 * 359.77204 * 25 14 13 27 27 C 1.47064 * 136.05806 * 0.04980 * 9 7 2 28 28 H 0.96996 * 120.00248 * 359.97438 * 1 2 3 29 29 H 1.09002 * 113.46793 * 321.93327 * 10 9 7 30 30 H 1.08999 * 113.46805 * 92.31694 * 10 9 7 31 31 H 1.09002 * 114.20460 * 87.54848 * 11 10 9 32 32 H 1.07997 * 126.91482 * 0.02562 * 13 12 11 33 33 H 1.08996 * 109.47190 * 215.24593 * 15 14 13 34 34 H 1.08998 * 109.47264 * 335.24837 * 15 14 13 35 35 H 0.97003 * 119.99825 * 0.02562 * 16 15 14 36 36 H 1.07995 * 120.42047 * 180.25542 * 21 20 19 37 37 H 1.07994 * 120.74687 * 179.76858 * 22 21 20 38 38 H 1.07999 * 120.41860 * 180.02562 * 23 22 21 39 39 H 1.08999 * 113.47096 * 267.62616 * 27 9 7 40 40 H 1.09005 * 113.46966 * 38.01009 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3966 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 1.6802 -3.8153 -0.0005 11 6 0.3424 -4.0936 -0.7000 12 7 -0.3488 -5.2925 -0.2191 13 6 -1.1655 -5.3585 0.8579 14 6 -1.5843 -6.6433 0.9351 15 6 -2.5158 -7.2275 1.9656 16 7 -3.8845 -7.2271 1.4430 17 6 -4.8936 -7.7074 2.1961 18 8 -4.6684 -8.1403 3.3085 19 6 -6.2811 -7.7075 1.6659 20 7 -6.5092 -7.2268 0.4530 21 6 -7.7302 -7.2160 -0.0513 22 6 -8.7812 -7.7069 0.7111 23 6 -8.5063 -8.1980 1.9799 24 7 -7.2606 -8.1837 2.4199 25 7 -1.0049 -7.2934 -0.0803 26 7 -0.2794 -6.4651 -0.7452 27 6 -0.0875 -2.7949 -0.0010 28 1 -0.4850 0.8400 0.0004 29 1 2.5487 -4.0469 -0.6170 30 1 1.7455 -4.2464 0.9985 31 1 0.3834 -4.0240 -1.7870 32 1 -1.4312 -4.5486 1.5210 33 1 -2.2132 -8.2501 2.1908 34 1 -2.4740 -6.6277 2.8748 35 1 -4.0642 -6.8818 0.5545 36 1 -7.9090 -6.8264 -1.0425 37 1 -9.7900 -7.7069 0.3257 38 1 -9.3005 -8.5877 2.5993 39 1 -0.4936 -2.9545 0.9979 40 1 -0.7224 -2.1580 -0.6171 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094329310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:29 Heat of formation + Delta-G solvation = 164.893005 kcal Electronic energy + Delta-G solvation = -26150.028212 eV Core-core repulsion = 22197.244713 eV Total energy + Delta-G solvation = -3952.783499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.37422 -42.23735 -40.38365 -40.10788 -36.49388 -35.09025 -34.77150 -33.76342 -33.35231 -32.30903 -29.77518 -28.43340 -26.70229 -26.19062 -25.86795 -25.43234 -23.47162 -22.51593 -22.09779 -21.22872 -19.74825 -18.98782 -18.70876 -18.24530 -17.42718 -17.04249 -16.95399 -16.85010 -16.71285 -16.08829 -16.03191 -15.76752 -15.38127 -15.03358 -14.70942 -14.50732 -14.46524 -14.27753 -13.84707 -13.50455 -13.39404 -13.03306 -12.80839 -12.66955 -12.38429 -12.33626 -12.06066 -12.04295 -11.83840 -11.64710 -11.37352 -11.04159 -10.86913 -10.76099 -10.39187 -10.34487 -10.24670 -9.12529 -8.02114 -5.37903 -0.60816 0.08157 0.54814 1.13407 1.26590 1.48083 1.49811 1.52710 1.58774 1.94163 2.42365 2.80033 2.88947 3.04753 3.15602 3.27404 3.30613 3.34784 3.66466 3.71784 3.89250 3.90487 4.00339 4.10600 4.13709 4.37373 4.45735 4.54471 4.58106 4.66902 4.78988 4.89084 4.98656 5.03030 5.06528 5.15300 5.29289 5.34758 5.65125 5.76068 5.89403 6.22091 6.78933 6.80740 7.00036 7.44485 7.46901 8.36622 9.15227 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.016316 B = 0.002255 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.692333 B =12415.872684 C =13326.482948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.056 4.056 3 Si 0.982 3.018 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.292 1.292 7 C -0.233 4.233 8 H 0.093 0.907 9 N -0.626 5.626 10 C 0.121 3.879 11 C 0.101 3.899 12 N -0.266 5.266 13 C -0.010 4.010 14 C -0.051 4.051 15 C 0.218 3.782 16 N -0.692 5.692 17 C 0.583 3.417 18 O -0.544 6.544 19 C 0.257 3.743 20 N -0.509 5.509 21 C 0.133 3.867 22 C -0.178 4.178 23 C 0.131 3.869 24 N -0.505 5.505 25 N -0.279 5.279 26 N -0.105 5.105 27 C 0.159 3.841 28 H 0.253 0.747 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.144 0.856 32 H 0.210 0.790 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.417 0.583 36 H 0.211 0.789 37 H 0.202 0.798 38 H 0.209 0.791 39 H 0.046 0.954 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.894 -13.535 -0.452 22.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.250 4.250 3 Si 0.810 3.190 4 H -0.189 1.189 5 H -0.217 1.217 6 H -0.219 1.219 7 C -0.361 4.361 8 H 0.110 0.890 9 N -0.352 5.352 10 C -0.006 4.006 11 C -0.001 4.001 12 N -0.058 5.058 13 C -0.163 4.163 14 C -0.190 4.190 15 C 0.094 3.906 16 N -0.345 5.345 17 C 0.366 3.634 18 O -0.419 6.419 19 C -0.013 4.013 20 N -0.227 5.227 21 C -0.032 4.032 22 C -0.200 4.200 23 C -0.034 4.034 24 N -0.221 5.221 25 N -0.146 5.146 26 N -0.084 5.084 27 C 0.032 3.968 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.161 0.839 32 H 0.227 0.773 33 H 0.107 0.893 34 H 0.123 0.877 35 H 0.254 0.746 36 H 0.228 0.772 37 H 0.219 0.781 38 H 0.226 0.774 39 H 0.064 0.936 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.026 -14.321 -0.446 21.497 hybrid contribution -0.828 1.888 0.169 2.068 sum -16.855 -12.433 -0.277 20.946 Atomic orbital electron populations 1.69933 1.06333 1.26219 1.56928 1.25636 0.96638 1.00867 1.01885 0.84966 0.78269 0.79012 0.76775 1.18899 1.21700 1.21904 1.19305 0.90866 0.81646 1.44245 0.88971 1.45456 1.03353 1.00387 1.86026 1.22822 0.95023 0.84555 0.98167 1.24406 0.94801 0.79404 1.01517 1.47564 1.30301 1.09201 1.18745 1.23862 0.97476 1.00618 0.94385 1.21822 1.05373 0.91509 1.00294 1.19412 0.76711 1.02165 0.92356 1.45747 1.06352 1.62036 1.20316 1.17508 0.83273 0.78274 0.84391 1.90781 1.83849 1.47023 1.20278 1.22441 0.94584 0.95856 0.88440 1.68287 1.26957 1.15249 1.12172 1.24082 0.86334 0.91433 1.01342 1.23709 1.04143 0.96757 0.95362 1.24109 0.92609 0.91760 0.94916 1.68184 1.02115 1.14826 1.37017 1.75010 1.08219 1.25400 1.05924 1.78282 1.19968 0.88496 1.21618 1.22418 0.88904 0.88038 0.97451 0.93750 0.91062 0.93182 0.83876 0.77339 0.89348 0.87692 0.74603 0.77241 0.78094 0.77395 0.93634 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -52.19 11.51 21.65 0.25 -51.94 16 2 C -0.06 -2.94 5.50 84.86 0.47 -2.47 16 3 Si 0.98 42.44 29.55 68.60 2.03 44.47 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 5 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.23 -11.95 10.75 84.03 0.90 -11.04 16 8 H 0.09 4.52 7.83 -2.91 -0.02 4.50 16 9 N -0.63 -28.73 3.78 -737.83 -2.79 -31.53 16 10 C 0.12 4.37 8.49 83.18 0.71 5.08 16 11 C 0.10 3.38 5.34 45.49 0.24 3.62 16 12 N -0.27 -8.32 3.56 -326.21 -1.16 -9.48 16 13 C -0.01 -0.28 10.72 83.49 0.89 0.62 16 14 C -0.05 -1.39 6.62 41.60 0.28 -1.12 16 15 C 0.22 5.20 6.23 85.63 0.53 5.73 16 16 N -0.69 -16.86 5.54 -469.04 -2.60 -19.46 16 17 C 0.58 16.34 7.85 86.99 0.68 17.03 16 18 O -0.54 -18.52 16.86 -3.62 -0.06 -18.58 16 19 C 0.26 6.29 7.59 137.68 1.05 7.34 16 20 N -0.51 -9.99 9.57 -189.10 -1.81 -11.80 16 21 C 0.13 1.41 11.30 84.79 0.96 2.37 16 22 C -0.18 -1.12 10.18 22.54 0.23 -0.89 16 23 C 0.13 1.55 11.30 84.78 0.96 2.50 16 24 N -0.51 -11.58 10.13 -189.10 -1.92 -13.50 16 25 N -0.28 -9.06 12.41 -48.60 -0.60 -9.66 16 26 N -0.10 -3.54 13.16 37.02 0.49 -3.05 16 27 C 0.16 6.44 6.75 83.23 0.56 7.00 16 28 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 29 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.14 4.60 8.14 -2.39 -0.02 4.58 16 32 H 0.21 4.92 6.78 -2.91 -0.02 4.90 16 33 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.42 9.70 7.77 -92.71 -0.72 8.98 16 36 H 0.21 0.61 8.06 -2.91 -0.02 0.59 16 37 H 0.20 -0.66 8.06 -2.91 -0.02 -0.68 16 38 H 0.21 0.80 8.06 -2.91 -0.02 0.78 16 39 H 0.05 1.78 6.38 -2.39 -0.02 1.77 16 40 H 0.06 2.92 7.12 -2.38 -0.02 2.91 16 Total: -1.00 -73.74 355.10 0.67 -73.07 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.39 Total: 15.69 kcal Atomic # 6 Polarization: 27.31 SS G_CDS: 8.46 Total: 35.77 kcal Atomic # 7 Polarization: -140.28 SS G_CDS: -10.14 Total: -150.42 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.06 Total: -18.58 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -73.74 0.67 -73.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094329310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.964 kcal (2) G-P(sol) polarization free energy of solvation -73.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds